MELO3C034832.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C034832.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Transcription factor GTE10
Location	chr11 : 7338934 .. 7339498 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACTGCGTCGGGAAAGCCTCCCCTGACAAGCTTTACCGTGCAGCTTTGTTAAGGAACCTTTTTGCCGACACTATACTGAAAGCTCGAGAAAAGCACTTGAAAAGGTTCATTAAACTTGAGATTTTTCTTGTTTGTCCAATGTTAAGCCAACCCTATGATGCACAGACGCACACATATTCATTCAATGAAAGTTGTTTGAATAAAAAAAATTCATTTAAGATATATTTGTTTTGAAAGTCATTGACTGACTTAGCTACAGGGTGACAAACGGGATCCTGAAAAAGTGAGAATGGAGAGAGAAGAACTTGAAAGACAGCAAAGAGAAGGTTGGCGGCGAGCTACGGACGGAGGAAGGTTGAAGCTGAAGTTGCAGTCGCGACGATGGATTGCGGCGGCGGACGGCAACGACGATGGAAGGGACGGCGACGAGCTACGGATAGCGACGAATGTTTCTCTCTTCTCTGAACCCTTTCCCTTTCGTTTTCAATTCTATGTAAAACAGAAACGAAATAATAATCAGGGGATCTCCCGACGCACTACTTACGGCGTCGAGAAAACCTAG

mRNA sequence

ATGTACTGCGTCGGGAAAGCCTCCCCTGACAAGCTTTACCGTGCAGCTTTGTTAAGGAACCTTTTTGCCGACACTATACTGAAAGCTCGAGAAAAGCACTTGAAAAGGTTCATTAAACTTGAGATTTTTCTTGGTGACAAACGGGATCCTGAAAAAGTGAGAATGGAGAGAGAAGAACTTGAAAGACAGCAAAGAGAAGGTTGGCGGCGAGCTACGGACGGAGGAAGGTTGAAGCTGAAGTTGCAGTCGCGACGATGGATTGCGGCGGCGGACGGCAACGACGATGGAAGGGACGGCGACGAGCTACGGATAGCGACGAATGTTTCTCTCTTCTCTGAACCCTTTCCCTTTCGTTTTCAATTCTATGTAAAACAGAAACGAAATAATAATCAGGGGATCTCCCGACGCACTACTTACGGCGTCGAGAAAACCTAG

Coding sequence (CDS)

ATGTACTGCGTCGGGAAAGCCTCCCCTGACAAGCTTTACCGTGCAGCTTTGTTAAGGAACCTTTTTGCCGACACTATACTGAAAGCTCGAGAAAAGCACTTGAAAAGGTTCATTAAACTTGAGATTTTTCTTGGTGACAAACGGGATCCTGAAAAAGTGAGAATGGAGAGAGAAGAACTTGAAAGACAGCAAAGAGAAGGTTGGCGGCGAGCTACGGACGGAGGAAGGTTGAAGCTGAAGTTGCAGTCGCGACGATGGATTGCGGCGGCGGACGGCAACGACGATGGAAGGGACGGCGACGAGCTACGGATAGCGACGAATGTTTCTCTCTTCTCTGAACCCTTTCCCTTTCGTTTTCAATTCTATGTAAAACAGAAACGAAATAATAATCAGGGGATCTCCCGACGCACTACTTACGGCGTCGAGAAAACCTAG

Protein sequence

MYCVGKASPDKLYRAALLRNLFADTILKAREKHLKRFIKLEIFLGDKRDPEKVRMEREELERQQREGWRRATDGGRLKLKLQSRRWIAAADGNDDGRDGDELRIATNVSLFSEPFPFRFQFYVKQKRNNNQGISRRTTYGVEKT

Homology

[Close]

BLAST of MELO3C034832.2 vs. NCBI nr
Match: ESR53294.1 (hypothetical protein CICLE_v10018939mg [Citrus clementina] >ESR53297.1 hypothetical protein CICLE_v10018939mg [Citrus clementina])

HSP 1 Score: 78.2 bits (191), Expect = 2.6e-11
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 6   KASPDKLYRAALLRNLFADTILKAREKHLKRFIKLEIFLGDKRDPEKVRMEREELERQQR 65
           + SPDKLYRAALLRN FADTILKAREK L++        G+KRDPEK+R+EREELER+ R
Sbjct: 590 QVSPDKLYRAALLRNRFADTILKAREKALEK--------GEKRDPEKLRIEREELERRHR 643

Query: 66  EG 68
           EG
Sbjct: 650 EG 643

[Close]

BLAST of MELO3C034832.2 vs. NCBI nr
Match: KDO69317.1 (hypothetical protein CISIN_1g004033mg [Citrus sinensis] >KDO69318.1 hypothetical protein CISIN_1g004033mg [Citrus sinensis])

HSP 1 Score: 78.2 bits (191), Expect = 2.6e-11
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 6   KASPDKLYRAALLRNLFADTILKAREKHLKRFIKLEIFLGDKRDPEKVRMEREELERQQR 65
           + SPDKLYRAALLRN FADTILKAREK L++        G+KRDPEK+R+EREELER+ R
Sbjct: 590 QVSPDKLYRAALLRNRFADTILKAREKALEK--------GEKRDPEKLRIEREELERRHR 643

Query: 66  EG 68
           EG
Sbjct: 650 EG 643

[Close]

BLAST of MELO3C034832.2 vs. NCBI nr
Match: PPE01602.1 (hypothetical protein GOBAR_DD01389 [Gossypium barbadense])

HSP 1 Score: 75.9 bits (185), Expect = 1.3e-10
Identity = 45/72 (62.50%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 6   KASPDKLYRAALLRNLFADTILKAREKHLKRFIKLEIFLGDKRDPEKVRMEREELERQQR 65
           + SP+KLYRAALLRN FADTILKAREK L++        G+K DPEK+RMEREELER+QR
Sbjct: 578 QVSPEKLYRAALLRNRFADTILKAREKALEK--------GEKGDPEKLRMEREELERRQR 637

Query: 66  EGWRRATDGGRL 78
           E      D G L
Sbjct: 638 EEPANDIDEGNL 641

[Close]

BLAST of MELO3C034832.2 vs. NCBI nr
Match: XP_020965881.1 (transcription factor GTE10 isoform X2 [Arachis ipaensis])

HSP 1 Score: 74.7 bits (182), Expect = 2.8e-10
Identity = 41/62 (66.13%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 6   KASPDKLYRAALLRNLFADTILKAREKHLKRFIKLEIFLGDKRDPEKVRMEREELERQQR 65
           + SPDKLYRAALLR+ FADTILKAREK L++         +K+DPEK+RMEREELER+Q+
Sbjct: 584 QVSPDKLYRAALLRSRFADTILKAREKALEK--------AEKQDPEKLRMEREELERRQK 637

Query: 66  EG 68
           EG
Sbjct: 644 EG 637

[Close]

BLAST of MELO3C034832.2 vs. NCBI nr
Match: XP_020993926.1 (transcription factor GTE10 isoform X2 [Arachis duranensis])

HSP 1 Score: 74.7 bits (182), Expect = 2.8e-10
Identity = 41/62 (66.13%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 6   KASPDKLYRAALLRNLFADTILKAREKHLKRFIKLEIFLGDKRDPEKVRMEREELERQQR 65
           + SPDKLYRAALLR+ FADTILKAREK L++         +K+DPEK+RMEREELER+Q+
Sbjct: 590 QVSPDKLYRAALLRSRFADTILKAREKALEK--------AEKQDPEKLRMEREELERRQK 643

Query: 66  EG 68
           EG
Sbjct: 650 EG 643

[Close]

BLAST of MELO3C034832.2 vs. TAIR10
Match: AT5G63320.1 (nuclear protein X1)

HSP 1 Score: 59.3 bits (142), Expect = 2.2e-09
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 8   SPDKLYRAALLRNLFADTILKAREKHLKRFIKLEIFLGDKRDPEKVRMEREELERQ 64
           SPDK YRAA L+N FADTI+KAREK   +        G+K DPEK+R+EREE E++
Sbjct: 554 SPDKRYRAAFLKNRFADTIMKAREKAFTK--------GEKGDPEKLRIEREEFEKR 601

[Close]

BLAST of MELO3C034832.2 vs. TAIR10
Match: AT3G27260.1 (global transcription factor group E8)

HSP 1 Score: 51.6 bits (122), Expect = 4.7e-07
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 7   ASPDKLYRAALLRNLFADTILKAREKHLKRFIKLEIFLGDKRDPEKVRMEREELERQQR 66
           AS +K YRAALL+N FAD ILKAREK L +        G K DPE++R EREEL  Q++
Sbjct: 529 ASSEKRYRAALLKNRFADIILKAREKPLPQ-------NGIKGDPERLRKEREELVLQKK 580

[Close]

BLAST of MELO3C034832.2 vs. TAIR10
Match: AT5G14270.2 (bromodomain and extraterminal domain protein 9)

HSP 1 Score: 45.4 bits (106), Expect = 3.4e-05
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 9   PDKLYRAALLRNLFADTILKAREKHLKRFIKLEIFLGDKRDPEKVR 55
           P+K YRAA+L+N FAD ILKAREK L +         D RDPEK++
Sbjct: 505 PEKSYRAAILKNRFADIILKAREKPLNQ--------NDTRDPEKLQ 542

[Close]

BLAST of MELO3C034832.2 vs. Swiss-Prot
Match: sp|Q9FGW9|GTE10_ARATH (Transcription factor GTE10 OS=Arabidopsis thaliana OX=3702 GN=GTE10 PE=1 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 4.0e-08
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 8   SPDKLYRAALLRNLFADTILKAREKHLKRFIKLEIFLGDKRDPEKVRMEREELERQ 64
           SPDK YRAA L+N FADTI+KAREK   +        G+K DPEK+R+EREE E++
Sbjct: 554 SPDKRYRAAFLKNRFADTIMKAREKAFTK--------GEKGDPEKLRIEREEFEKR 601

[Close]

BLAST of MELO3C034832.2 vs. Swiss-Prot
Match: sp|Q9LK27|GTE8_ARATH (Transcription factor GTE8 OS=Arabidopsis thaliana OX=3702 GN=GTE8 PE=2 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 8.4e-06
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 7   ASPDKLYRAALLRNLFADTILKAREKHLKRFIKLEIFLGDKRDPEKVRMEREELERQQR 66
           AS +K YRAALL+N FAD ILKAREK L +        G K DPE++R EREEL  Q++
Sbjct: 529 ASSEKRYRAALLKNRFADIILKAREKPLPQ-------NGIKGDPERLRKEREELVLQKK 580

[Close]

BLAST of MELO3C034832.2 vs. Swiss-Prot
Match: sp|Q93YS6|GTE9_ARATH (Transcription factor GTE9 OS=Arabidopsis thaliana OX=3702 GN=GTE9 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.0e-04
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 9   PDKLYRAALLRNLFADTILKAREKHLKRFIKLEIFLGDKRDPEKVR 55
           P+K YRAA+L+N FAD ILKAREK L +         D RDPEK++
Sbjct: 504 PEKSYRAAILKNRFADIILKAREKPLNQ--------NDTRDPEKLQ 541

[Close]

BLAST of MELO3C034832.2 vs. TrEMBL
Match: tr|V4TIV3|V4TIV3_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10018939mg PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.7e-11
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 6   KASPDKLYRAALLRNLFADTILKAREKHLKRFIKLEIFLGDKRDPEKVRMEREELERQQR 65
           + SPDKLYRAALLRN FADTILKAREK L++        G+KRDPEK+R+EREELER+ R
Sbjct: 590 QVSPDKLYRAALLRNRFADTILKAREKALEK--------GEKRDPEKLRIEREELERRHR 643

Query: 66  EG 68
           EG
Sbjct: 650 EG 643

[Close]

BLAST of MELO3C034832.2 vs. TrEMBL
Match: tr|A0A067G0T0|A0A067G0T0_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g004033mg PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.7e-11
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 6   KASPDKLYRAALLRNLFADTILKAREKHLKRFIKLEIFLGDKRDPEKVRMEREELERQQR 65
           + SPDKLYRAALLRN FADTILKAREK L++        G+KRDPEK+R+EREELER+ R
Sbjct: 590 QVSPDKLYRAALLRNRFADTILKAREKALEK--------GEKRDPEKLRIEREELERRHR 643

Query: 66  EG 68
           EG
Sbjct: 650 EG 643

[Close]

BLAST of MELO3C034832.2 vs. TrEMBL
Match: tr|A0A2P5SRF3|A0A2P5SRF3_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD01389 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 8.4e-11
Identity = 45/72 (62.50%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 6   KASPDKLYRAALLRNLFADTILKAREKHLKRFIKLEIFLGDKRDPEKVRMEREELERQQR 65
           + SP+KLYRAALLRN FADTILKAREK L++        G+K DPEK+RMEREELER+QR
Sbjct: 578 QVSPEKLYRAALLRNRFADTILKAREKALEK--------GEKGDPEKLRMEREELERRQR 637

Query: 66  EGWRRATDGGRL 78
           E      D G L
Sbjct: 638 EEPANDIDEGNL 641

[Close]

BLAST of MELO3C034832.2 vs. TrEMBL
Match: tr|A0A2H3YK72|A0A2H3YK72_PHODC (transcription factor GTE9-like OS=Phoenix dactylifera OX=42345 GN=LOC103714479 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.5e-10
Identity = 42/61 (68.85%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 6   KASPDKLYRAALLRNLFADTILKAREKHLKRFIKLEIFLGDKRDPEKVRMEREELERQQR 65
           + SP+KLYRAALLRN FADTILKAREK L +        G+KRDPE VR+EREELERQ+R
Sbjct: 535 QVSPEKLYRAALLRNRFADTILKAREKTLDQ--------GEKRDPEMVRLEREELERQKR 587

Query: 66  E 67
           E
Sbjct: 595 E 587

[Close]

BLAST of MELO3C034832.2 vs. TrEMBL
Match: tr|V4TTT0|V4TTT0_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10018939mg PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.5e-10
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 6   KASPDKLYRAALLRNLFADTILKAREKHLKRFIKLEIFLGDKRDPEKVRMEREELERQ 64
           + SPDKLYRAALLRN FADTILKAREK L++        G+KRDPEK+R+EREELER+
Sbjct: 590 QVSPDKLYRAALLRNRFADTILKAREKALEK--------GEKRDPEKLRIEREELERR 639

The following BLAST results are available for this feature:

BLAST of MELO3C034832.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ESR53294.1	2.6e-11	69.35	hypothetical protein CICLE_v10018939mg [Citrus clementina] >ESR53297.1 hypotheti...	[more]
KDO69317.1	2.6e-11	69.35	hypothetical protein CISIN_1g004033mg [Citrus sinensis] >KDO69318.1 hypothetical...	[more]
PPE01602.1	1.3e-10	62.50	hypothetical protein GOBAR_DD01389 [Gossypium barbadense]	[more]
XP_020965881.1	2.8e-10	66.13	transcription factor GTE10 isoform X2 [Arachis ipaensis]	[more]
XP_020993926.1	2.8e-10	66.13	transcription factor GTE10 isoform X2 [Arachis duranensis]	[more]

BLAST of MELO3C034832.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G63320.1	2.2e-09	57.14	nuclear protein X1	[more]
AT3G27260.1	4.7e-07	55.93	global transcription factor group E8	[more]
AT5G14270.2	3.4e-05	54.35	bromodomain and extraterminal domain protein 9	[more]

BLAST of MELO3C034832.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FGW9\|GTE10_ARATH	4.0e-08	57.14	Transcription factor GTE10 OS=Arabidopsis thaliana OX=3702 GN=GTE10 PE=1 SV=2	[more]
sp\|Q9LK27\|GTE8_ARATH	8.4e-06	55.93	Transcription factor GTE8 OS=Arabidopsis thaliana OX=3702 GN=GTE8 PE=2 SV=2	[more]
sp\|Q93YS6\|GTE9_ARATH	6.0e-04	54.35	Transcription factor GTE9 OS=Arabidopsis thaliana OX=3702 GN=GTE9 PE=1 SV=1	[more]

BLAST of MELO3C034832.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|V4TIV3\|V4TIV3_9ROSI	1.7e-11	69.35	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10018939mg PE=4 ...	[more]
tr\|A0A067G0T0\|A0A067G0T0_CITSI	1.7e-11	69.35	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g004033mg PE=4 SV=1	[more]
tr\|A0A2P5SRF3\|A0A2P5SRF3_GOSBA	8.4e-11	62.50	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD01389 PE=4 SV...	[more]
tr\|A0A2H3YK72\|A0A2H3YK72_PHODC	2.5e-10	68.85	transcription factor GTE9-like OS=Phoenix dactylifera OX=42345 GN=LOC103714479 P...	[more]
tr\|V4TTT0\|V4TTT0_9ROSI	5.5e-10	68.97	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10018939mg PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009738	abscisic acid-activated signaling pathway
biological_process	GO:0051365	cellular response to potassium ion starvation
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009409	response to cold
biological_process	GO:0009651	response to salt stress
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034832.2.1	MELO3C034832.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C034832.2	Cucumber (Chinese Long) v3	cucmedB096
MELO3C034832.2	Watermelon (97103) v2	medwmbB087
MELO3C034832.2	Wax gourd	medwgoB128
MELO3C034832.2	Wax gourd	medwgoB139
MELO3C034832.2	Cucumber (Gy14) v2	cgybmedB080
MELO3C034832.2	Cucumber (Gy14) v1	cgymedB435
MELO3C034832.2	Cucurbita maxima (Rimu)	cmamedB573
MELO3C034832.2	Cucurbita maxima (Rimu)	cmamedB616
MELO3C034832.2	Cucurbita moschata (Rifu)	cmomedB561
MELO3C034832.2	Cucurbita moschata (Rifu)	cmomedB605
MELO3C034832.2	Cucurbita pepo (Zucchini)	cpemedB306
MELO3C034832.2	Cucurbita pepo (Zucchini)	cpemedB806
MELO3C034832.2	Wild cucumber (PI 183967)	cpimedB088
MELO3C034832.2	Cucumber (Chinese Long) v2	cumedB088
MELO3C034832.2	Bottle gourd (USVL1VR-Ls)	lsimedB054
MELO3C034832.2	Watermelon (Charleston Gray)	medwcgB088
MELO3C034832.2	Watermelon (97103) v1	medwmB120
MELO3C034832.2	Silver-seed gourd	carmedB1034