MELO3C034824.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C034824.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Polynucleotidyl transferase isoform 5
Location	chr11 : 7266010 .. 7269018 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTCCTTCTCCCACAATCTTCCGTCTGCCGCGTGGTAATCTGAAAAGCCCTAACTTGTTCGACATCATCTCTTCCGTCTGCGTGGTGTTCATCGTCGCTCGCAAGCCGCTGCCGCCTTTTCTATCTGCGTGTCGTTTCGTCGTTTCCCGTGGTTGCTCGTGTTGATCGTCGCTCATTGCTCATGGTTGAGCGTTCTGTTCGTGGTCGCTCGCAAGCAGGTTCGTTACGGATTGGTTTCCATGTACTCTTTTCACTTCCATCACCTCTGATTAATTATTTCTCTTGTGGGTTGGTTTCCATTATCCTTCTGCCTTTGTGGGTTTTTAATCCCTTTTCTTCTTCTGGCTTCTTCTATAAGATCTTATCTCCACCCTGCTTACAAGTTAAGCCGATCAAATGACCCATTTCCTTGGTTCTTCAAATTGAGAGAGGATTTTTCTTGATTTTCCACAGGTGGGATTGAGAGGGTTTTGGGTTTCTTTTTGTTTTGAAAAAGCTTGTACTATTTTGAACTTCTCCATTTTTGACAGTGTTCTGAAAAAGGGTGATTTTGGGGAGTTTTTTTCTATGTTTGATCCATGGGTACGAATACCCACCAGAGTTTTCAGCAACCCAATTCACCGTTGCTTTGATTTCGCTACGCTCCCAGTTCTTTGTTTGCGGATTTCTCTCATGGGATTGATTCTAAGCGCTTGAATCCTTTCGAGTGCTTTGAATCGGAGCGGTTGGTTTCTAGATATGGGAGTCGCGGTGGCGGTTGTAATAGTAATGATTCGAAATCTCCGGTAGTCGAAAACTACTTTTCTGGTCTGCTGTTGCATTATCCTCGGCTGAGCTCCGTCGTTAACTGTTCTTCTTCTTCTTCCTCCTCTTCTTCCTCTTCTTGTTCTTCTTCATCCTCCTCAATGTGTAGCTCACTTGGTTTTTTGGGTTCTAATCTTGTTCGTCAGAGTAGCTGGGGTTCTCTCTCAATTCAATGAAAATGGTGAATGATTCATTACTCATATTTTGAAGATTTTTAAGCAATACATATACTTTATTACAAGCAAAATGTATTACCTATTGAACCTGAATTCTGGGCTTTTGACAAATAGTTTTTAAAGTTCAAAGTCTTCATATCTTTACGAAACTTTTATGTGTTTTAAGGTTTACTTGGCATTGGAAGCTGGCTATTTCGAAAAAGTTGATGAATTTTGCAATAGGTACTCCCTTAGGGTTTTCTGAATATCAAAGGTATGACGTCTGTACCATAGTCTCTTGCACTTAGAAGCTTCATTGCATATGTCGGGCCGTTTTTCCAGCTTTAACAAGATCAATATCTCATGTTAGACTATTATTATTCAGAAGTATTTCTACGAACTATCTTGTTGGCCTTTATCCATTCCCTATTACCCTTAGTCATTCCTTTTTACCTTTTGTTCTTTATTGCCCCAAGTTTGTCCACTTTATTTGTTTTTTAATTGAATAAATATAGGCATCTTGCAGAAAATTTTACAAGTATAAAATAAAGAGTTAAAAGGCGCTGCAAGAAAACAAAGAACCGGTTGAATGCCTCTAGGAATTGCTTCCATGGGCATTAAGAAGTGGAGTTGCTGGATCTAGTGAATAAACCACAAAAATCCTTATCATAATTCCTAGGTGATTAAAGCTTTTGTTAGGACACTGATCATGTTCTTTTATTCCTCAAAAAAATTTAAACTGGCTTTAGAATAAGGAAAATAAGGTACTTGCTGACCAAAAAAGGTAAAACGTAACCTAGTGAGCTACACAATTTTACCATAGGCATTAAGAAGGGCCTTTTCCTTCTCACGTTGATCACCCAATGAAGGAAGGTAGAGTACTTATCACCCTTAGTGAGCTACTCAATTTTACCTGTGTCTCGACAAAGAGAAAATTAGTGTAAGTGTAAAATTAATATCATTTAACCTAAACTTATTTATTATATTTTTAGCTTATTGACACATTATTGTTTTAAAAACTTAGGAACAAAAATTATATTTGATCTGCCTAATTTTCTAGGCAGTCATCAATTCGGTTGTAAATTATCTTTGAGTAACTTAGGATGGTTTCTACTACTAGGAACAAATCTTGGTTTCTGTACATTATATGACTTCAGTGTTCTTGAACATTATCTACATAAAAAATTAGCATGCTTCGAATCACTGCAGTTAAATTTTATTTGCATTGCACAAAATTTTACTTGTTCTGATTCATATTAGTTAACCTAATCAACATATTGGTTTTCTGTAGAACGTGAGGGAAGTTATGGACAAAAGTTATCGAACCACTATCTGAATCTTAATCAACTAATTGCTGGAGATATTTTATGGGTTGACAATGCTGATGCTTTACATCATGCAACACGCCATATCGAGGAGTGTAAAGTATTTTAGACATGTATATTTTGTTTATATTATACAAGTTAAAATTGGTTCATATTGTAGCTTAGACATGTATGTGGTTCATTGATATATATATATATATATATATATATGCAATTTCTTTGATGGAAAGTTTGAGTTTTCTCAATTGATGTGTATTAATATTGTTGGACTTCAAAACAGGTGAACGATAAAATATATGGATATTTTAAAATATAATTTTTTTATTTGAACAAACCTTCTATAGTTGATACCTATAAACTGTCAAGTATAATTTCACTTGACGTGTAAAACTTGTAAAAAATAAAACCCTCTTATTCTTGACACTGGATTAGTTGACGCATAAAAACGTCAAGTATAATTATATACTTGGCGCTTTTTCAATGTCAAGTATAATTATACTTGACACTTATAAACTGTCAAGTAAACCTCTCTTATTCTTGACACTGAATTAGTTGACACATTGAAAAACGTCAAGTAAACCAATACTTGACAGTTAAAAAGCATCAAGTAAACCAAGTTTTGTAGTAGTGTATTGTGATACAGACTGGGCAGGTTCTGCTGATGATCGGAAAAGCACTTTCGGTGGATGTTTCTTTCTTGGGAATAATCTTGTTTCATGGTTAA

mRNA sequence

TTCTCCTTCTCCCACAATCTTCCGTCTGCCGCGTGGTAATCTGAAAAGCCCTAACTTGTTCGACATCATCTCTTCCGTCTGCGTGGTGTTCATCGTCGCTCGCAAGCCGCTGCCGCCTTTTCTATCTGCGTGTCGTTTCGTCGTTTCCCGTGGTTGCTCGTGTTGATCGTCGCTCATTGCTCATGGTTGAGCGTTCTGTTCGTGGTCGCTCGCAAGCAGAACGTGAGGGAAGTTATGGACAAAAGTTATCGAACCACTATCTGAATCTTAATCAACTAATTGCTGGAGATATTTTATGGGTTGACAATGCTGATGCTTTACATCATGCAACACGCCATATCGAGGAGTGTAAAACTGGGCAGGTTCTGCTGATGATCGGAAAAGCACTTTCGGTGGATGTTTCTTTCTTGGGAATAATCTTGTTTCATGGTTAA

Coding sequence (CDS)

ATGGTTGAGCGTTCTGTTCGTGGTCGCTCGCAAGCAGAACGTGAGGGAAGTTATGGACAAAAGTTATCGAACCACTATCTGAATCTTAATCAACTAATTGCTGGAGATATTTTATGGGTTGACAATGCTGATGCTTTACATCATGCAACACGCCATATCGAGGAGTGTAAAACTGGGCAGGTTCTGCTGATGATCGGAAAAGCACTTTCGGTGGATGTTTCTTTCTTGGGAATAATCTTGTTTCATGGTTAA

Protein sequence

MVERSVRGRSQAEREGSYGQKLSNHYLNLNQLIAGDILWVDNADALHHATRHIEECKTGQVLLMIGKALSVDVSFLGIILFHG

Homology

[Close]

BLAST of MELO3C034824.2 vs. NCBI nr
Match: XP_008450552.1 (PREDICTED: uncharacterized protein LOC103492118 [Cucumis melo] >XP_008450553.1 PREDICTED: uncharacterized protein LOC103492118 [Cucumis melo])

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-17
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 13  EREGSYGQKLSNHYLNLNQLIAGDILWVDNADALHHATRHIEECK 58
           EREGSYGQKL+NHYLNLNQLIAGDILWVDNADALHHATRHIEECK
Sbjct: 335 EREGSYGQKLTNHYLNLNQLIAGDILWVDNADALHHATRHIEECK 379

[Close]

BLAST of MELO3C034824.2 vs. NCBI nr
Match: XP_004135767.1 (PREDICTED: uncharacterized protein LOC101205010 isoform X1 [Cucumis sativus] >XP_011659603.1 PREDICTED: uncharacterized protein LOC101205010 isoform X1 [Cucumis sativus] >KGN66018.1 hypothetical protein Csa_1G561980 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 1.0e-12
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 13  EREGSYGQKLSNHYLNLNQLIAGDILWVDNADALHHATRHIEECK 58
           EREGSY QKL NHYL+LNQLI G+ILW+DNADALH AT HIEECK
Sbjct: 335 EREGSYEQKLPNHYLDLNQLIDGNILWIDNADALHRATCHIEECK 379

[Close]

BLAST of MELO3C034824.2 vs. NCBI nr
Match: XP_011659606.1 (PREDICTED: uncharacterized protein LOC101205010 isoform X2 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 1.0e-12
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 13  EREGSYGQKLSNHYLNLNQLIAGDILWVDNADALHHATRHIEECK 58
           EREGSY QKL NHYL+LNQLI G+ILW+DNADALH AT HIEECK
Sbjct: 335 EREGSYEQKLPNHYLDLNQLIDGNILWIDNADALHRATCHIEECK 379

[Close]

BLAST of MELO3C034824.2 vs. NCBI nr
Match: XP_022968701.1 (uncharacterized protein LOC111467860 isoform X2 [Cucurbita maxima])

HSP 1 Score: 78.2 bits (191), Expect = 1.5e-11
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 13  EREGSYGQKLSNHYLNLNQLIAGDILWVDNADALHHATRHIEECK 58
           EREG+YGQ   NHYLNLNQLI GDILWVDNADALH+A  HIEECK
Sbjct: 296 EREGAYGQ---NHYLNLNQLITGDILWVDNADALHNAICHIEECK 337

[Close]

BLAST of MELO3C034824.2 vs. NCBI nr
Match: XP_022968698.1 (uncharacterized protein LOC111467860 isoform X1 [Cucurbita maxima] >XP_022968699.1 uncharacterized protein LOC111467860 isoform X1 [Cucurbita maxima] >XP_022968700.1 uncharacterized protein LOC111467860 isoform X1 [Cucurbita maxima])

HSP 1 Score: 78.2 bits (191), Expect = 1.5e-11
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 13  EREGSYGQKLSNHYLNLNQLIAGDILWVDNADALHHATRHIEECK 58
           EREG+YGQ   NHYLNLNQLI GDILWVDNADALH+A  HIEECK
Sbjct: 335 EREGAYGQ---NHYLNLNQLITGDILWVDNADALHNAICHIEECK 376

[Close]

BLAST of MELO3C034824.2 vs. TrEMBL
Match: tr|A0A1S3BPE9|A0A1S3BPE9_CUCME (uncharacterized protein LOC103492118 OS=Cucumis melo OX=3656 GN=LOC103492118 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.0e-18
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 13  EREGSYGQKLSNHYLNLNQLIAGDILWVDNADALHHATRHIEECK 58
           EREGSYGQKL+NHYLNLNQLIAGDILWVDNADALHHATRHIEECK
Sbjct: 335 EREGSYGQKLTNHYLNLNQLIAGDILWVDNADALHHATRHIEECK 379

[Close]

BLAST of MELO3C034824.2 vs. TrEMBL
Match: tr|A0A0A0LWB0|A0A0A0LWB0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G561980 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.8e-13
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 13  EREGSYGQKLSNHYLNLNQLIAGDILWVDNADALHHATRHIEECK 58
           EREGSY QKL NHYL+LNQLI G+ILW+DNADALH AT HIEECK
Sbjct: 335 EREGSYEQKLPNHYLDLNQLIDGNILWIDNADALHRATCHIEECK 379

The following BLAST results are available for this feature:

BLAST of MELO3C034824.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450552.1	1.1e-17	97.78	PREDICTED: uncharacterized protein LOC103492118 [Cucumis melo] >XP_008450553.1 P...	[more]
XP_004135767.1	1.0e-12	82.22	PREDICTED: uncharacterized protein LOC101205010 isoform X1 [Cucumis sativus] >XP...	[more]
XP_011659606.1	1.0e-12	82.22	PREDICTED: uncharacterized protein LOC101205010 isoform X2 [Cucumis sativus]	[more]
XP_022968701.1	1.5e-11	82.22	uncharacterized protein LOC111467860 isoform X2 [Cucurbita maxima]	[more]
XP_022968698.1	1.5e-11	82.22	uncharacterized protein LOC111467860 isoform X1 [Cucurbita maxima] >XP_022968699...	[more]

BLAST of MELO3C034824.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C034824.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C034824.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BPE9\|A0A1S3BPE9_CUCME	7.0e-18	97.78	uncharacterized protein LOC103492118 OS=Cucumis melo OX=3656 GN=LOC103492118 PE=...	[more]
tr\|A0A0A0LWB0\|A0A0A0LWB0_CUCSA	6.8e-13	82.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G561980 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006139	nucleobase-containing compound metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034824.2.1	MELO3C034824.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C034824.2	Cucumber (Gy14) v2	cgybmedB080
MELO3C034824.2	Cucumber (Gy14) v1	cgymedB435
MELO3C034824.2	Cucurbita maxima (Rimu)	cmamedB573
MELO3C034824.2	Cucurbita maxima (Rimu)	cmamedB614
MELO3C034824.2	Cucurbita maxima (Rimu)	cmamedB616
MELO3C034824.2	Cucurbita moschata (Rifu)	cmomedB561
MELO3C034824.2	Cucurbita moschata (Rifu)	cmomedB605
MELO3C034824.2	Cucurbita pepo (Zucchini)	cpemedB306
MELO3C034824.2	Cucurbita pepo (Zucchini)	cpemedB806
MELO3C034824.2	Wild cucumber (PI 183967)	cpimedB088
MELO3C034824.2	Cucumber (Chinese Long) v2	cumedB088
MELO3C034824.2	Bottle gourd (USVL1VR-Ls)	lsimedB054
MELO3C034824.2	Watermelon (Charleston Gray)	medwcgB088
MELO3C034824.2	Watermelon (97103) v1	medwmB120
MELO3C034824.2	Silver-seed gourd	carmedB1034
MELO3C034824.2	Cucumber (Chinese Long) v3	cucmedB096
MELO3C034824.2	Watermelon (97103) v2	medwmbB087
MELO3C034824.2	Wax gourd	medwgoB128
MELO3C034824.2	Wax gourd	medwgoB139