MELO3C034797.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C034797.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	RING-type E3 ubiquitin transferase
Location	chr11 : 19147731 .. 19147968 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCTGAGTAGCCTGGCTGGGATTCAAGAGGGAAAGGATGCGATTATGGAAGAGGGTGGAATTGTTGCGCTTCTAGAAGCAATTGAAGATGGGTCGGTGAAATGGAAAGAATTTGCAGTGTTGACACTCTTGCAATTGTGTGTTGAGAGTGTGAGAAATCGAGGGTTACTCGTCAGGTGGAATTCCCCCTTTAGTTGCACTTTCTCATACTGGAAGCGTTCGAGCAAAGCATAAG

mRNA sequence

ATGCTTCTGAGTAGCCTGGCTGGGATTCAAGAGGGAAAGGATGCGATTATGGAAGAGGGTGGAATTGTTGCGCTTCTAGAAGCAATTGAAGATGGGTCGGTGAAATGGAAAGAATTTGCAGTGTTGACACTCTTGCAATTGTGTGTTGAGAGTGTGAGAAATCGAGGGTTACTCGTCAGGTGGAATTCCCCCTTTAGTTGCACTTTCTCATACTGGAAGCGTTCGAGCAAAGCATAAG

Coding sequence (CDS)

ATGCTTCTGAGTAGCCTGGCTGGGATTCAAGAGGGAAAGGATGCGATTATGGAAGAGGGTGGAATTGTTGCGCTTCTAGAAGCAATTGAAGATGGGTCGGTGAAATGGAAAGAATTTGCAGTGTTGACACTCTTGCAATTGTGTGTTGAGAGTGTGAGAAATCGAGGGTTACTCGTCAGGTGGAATTCCCCCTTTAGTTGCACTTTCTCATACTGGAAGCGTTCGAGCAAAGCATAA

Protein sequence

MLLSSLAGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVESVRNRGLLVRWNSPFSCTFSYWKRSSKA

Homology

[Close]

BLAST of MELO3C034797.2 vs. NCBI nr
Match: XP_008467070.1 (PREDICTED: U-box domain-containing protein 3-like [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 2.2e-17
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1  MLLSSLAGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVESVRNRGLLV 60
          MLLSSLAGIQEGKDAI+EEGGI AL+EAIEDG VK KEFAVLTLLQLCVESVR+ GLLV
Sbjct: 1  MLLSSLAGIQEGKDAIVEEGGIAALVEAIEDGLVKGKEFAVLTLLQLCVESVRDPGLLV 59

[Close]

BLAST of MELO3C034797.2 vs. NCBI nr
Match: POE71741.1 (u-box domain-containing protein 2 [Quercus suber])

HSP 1 Score: 94.0 bits (232), Expect = 2.5e-16
Identity = 46/60 (76.67%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 1  MLLSSLAGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVESVRNRGLLVR 60
          ++LSSLAG++EGK+AI+EEGGI  L+EAIEDG+VK KEFAV+TLLQLC +SVRNRGLLVR
Sbjct: 40 VVLSSLAGVEEGKEAIVEEGGIAVLVEAIEDGTVKGKEFAVVTLLQLCADSVRNRGLLVR 99

[Close]

BLAST of MELO3C034797.2 vs. NCBI nr
Match: KHN40819.1 (U-box domain-containing protein 2 [Glycine soja])

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 47/56 (83.93%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 1  MLLSSLAGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVESVRNRG 57
          ++L+SLAGIQEGKDAI+EEGGI AL+EAIEDGSVK KEFAVLTLLQLCV+SV NRG
Sbjct: 2  VVLNSLAGIQEGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCVDSVINRG 57

[Close]

BLAST of MELO3C034797.2 vs. NCBI nr
Match: KHN42282.1 (U-box domain-containing protein 2 [Glycine soja])

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-15
Identity = 47/60 (78.33%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1  MLLSSLAGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVESVRNRGLLVR 60
          ++L+SLAGI+EGK+AI+EEGGI ALLEAIEDGSVK KEFAVLTL+QLC  SV NR LLVR
Sbjct: 7  VVLNSLAGIEEGKEAIVEEGGIGALLEAIEDGSVKGKEFAVLTLVQLCAHSVANRALLVR 66

[Close]

BLAST of MELO3C034797.2 vs. NCBI nr
Match: XP_010539196.1 (PREDICTED: U-box domain-containing protein 4-like [Tarenaya hassleriana])

HSP 1 Score: 89.4 bits (220), Expect = 6.0e-15
Identity = 45/60 (75.00%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1   MLLSSLAGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVESVRNRGLLVR 60
           ++LSSLA I+EGK+AI+EE GI  L+EAIEDGSVK KEFAVLTLLQLC +++RNRGLLVR
Sbjct: 351 VVLSSLAAIEEGKEAIVEERGIAVLVEAIEDGSVKEKEFAVLTLLQLCADNIRNRGLLVR 410

[Close]

BLAST of MELO3C034797.2 vs. TAIR10
Match: AT5G67340.1 (ARM repeat superfamily protein)

HSP 1 Score: 51.2 bits (121), Expect = 3.3e-07
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 1   MLLSSLAGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVES 52
           ++L++LA ++EGK AI EEGGI  L+E +E GS + KE A   LLQLC  S
Sbjct: 608 VVLANLATVREGKIAIGEEGGIPVLVEVVELGSARGKENATAALLQLCTHS 658

[Close]

BLAST of MELO3C034797.2 vs. TAIR10
Match: AT3G54790.1 (ARM repeat superfamily protein)

HSP 1 Score: 47.8 bits (112), Expect = 3.7e-06
Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 2   LLSSLAGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVES 52
           LL++L+ + EG+ AI+ EGGI  L+E ++ GS + KE A   LLQLC+ S
Sbjct: 660 LLANLSAVGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNS 709

[Close]

BLAST of MELO3C034797.2 vs. Swiss-Prot
Match: sp|Q5XEZ8|PUB2_ARATH (U-box domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PUB2 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.0e-06
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 1   MLLSSLAGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVES 52
           ++L++LA ++EGK AI EEGGI  L+E +E GS + KE A   LLQLC  S
Sbjct: 608 VVLANLATVREGKIAIGEEGGIPVLVEVVELGSARGKENATAALLQLCTHS 658

[Close]

BLAST of MELO3C034797.2 vs. Swiss-Prot
Match: sp|Q8GWV5|PUB3_ARATH (U-box domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PUB3 PE=2 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 6.6e-05
Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 2   LLSSLAGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVES 52
           LL++L+ + EG+ AI+ EGGI  L+E ++ GS + KE A   LLQLC+ S
Sbjct: 660 LLANLSAVGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNS 709

[Close]

BLAST of MELO3C034797.2 vs. TrEMBL
Match: tr|A0A1S3CTY9|A0A1S3CTY9_CUCME (U-box domain-containing protein 3-like OS=Cucumis melo OX=3656 GN=LOC103504507 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-17
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1  MLLSSLAGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVESVRNRGLLV 60
          MLLSSLAGIQEGKDAI+EEGGI AL+EAIEDG VK KEFAVLTLLQLCVESVR+ GLLV
Sbjct: 1  MLLSSLAGIQEGKDAIVEEGGIAALVEAIEDGLVKGKEFAVLTLLQLCVESVRDPGLLV 59

[Close]

BLAST of MELO3C034797.2 vs. TrEMBL
Match: tr|A0A2P4IT93|A0A2P4IT93_QUESU (U-box domain-containing protein 2 OS=Quercus suber OX=58331 GN=CFP56_31844 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-16
Identity = 46/60 (76.67%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 1  MLLSSLAGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVESVRNRGLLVR 60
          ++LSSLAG++EGK+AI+EEGGI  L+EAIEDG+VK KEFAV+TLLQLC +SVRNRGLLVR
Sbjct: 40 VVLSSLAGVEEGKEAIVEEGGIAVLVEAIEDGTVKGKEFAVVTLLQLCADSVRNRGLLVR 99

[Close]

BLAST of MELO3C034797.2 vs. TrEMBL
Match: tr|A0A0B2SDD9|A0A0B2SDD9_GLYSO (U-box domain-containing protein 2 OS=Glycine soja OX=3848 GN=glysoja_042030 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.8e-15
Identity = 47/60 (78.33%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1  MLLSSLAGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVESVRNRGLLVR 60
          ++L+SLAGI+EGK+AI+EEGGI ALLEAIEDGSVK KEFAVLTL+QLC  SV NR LLVR
Sbjct: 7  VVLNSLAGIEEGKEAIVEEGGIGALLEAIEDGSVKGKEFAVLTLVQLCAHSVANRALLVR 66

[Close]

BLAST of MELO3C034797.2 vs. TrEMBL
Match: tr|A0A1S3CFT8|A0A1S3CFT8_CUCME (tetraspanin-8-like OS=Cucumis melo OX=3656 GN=LOC103500450 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-14
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 7   AGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVESVRNR 56
           AGIQEGKDAI+EEGGI AL+EAIEDGSVK KEFAVLTLLQLCVESVRNR
Sbjct: 156 AGIQEGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCVESVRNR 204

[Close]

BLAST of MELO3C034797.2 vs. TrEMBL
Match: tr|A0A2I4F9U2|A0A2I4F9U2_9ROSI (U-box domain-containing protein 2-like OS=Juglans regia OX=51240 GN=LOC108996845 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.4e-14
Identity = 42/56 (75.00%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 1  MLLSSLAGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVESVRNRG 57
          ++LSSLAGI+EG+ AI+EEGGI  L+EAIEDGS+K KEFAV+TLLQLC +SVRNRG
Sbjct: 7  VVLSSLAGIEEGRQAIVEEGGIAVLVEAIEDGSLKGKEFAVVTLLQLCADSVRNRG 62

The following BLAST results are available for this feature:

BLAST of MELO3C034797.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008467070.1	2.2e-17	88.14	PREDICTED: U-box domain-containing protein 3-like [Cucumis melo]	[more]
POE71741.1	2.5e-16	76.67	u-box domain-containing protein 2 [Quercus suber]	[more]
KHN40819.1	1.2e-15	83.93	U-box domain-containing protein 2 [Glycine soja]	[more]
KHN42282.1	2.7e-15	78.33	U-box domain-containing protein 2 [Glycine soja]	[more]
XP_010539196.1	6.0e-15	75.00	PREDICTED: U-box domain-containing protein 4-like [Tarenaya hassleriana]	[more]

BLAST of MELO3C034797.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G67340.1	3.3e-07	52.94	ARM repeat superfamily protein	[more]
AT3G54790.1	3.7e-06	48.00	ARM repeat superfamily protein	[more]

BLAST of MELO3C034797.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q5XEZ8\|PUB2_ARATH	6.0e-06	52.94	U-box domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PUB2 PE=2 S...	[more]
sp\|Q8GWV5\|PUB3_ARATH	6.6e-05	48.00	U-box domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PUB3 PE=2 S...	[more]

BLAST of MELO3C034797.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CTY9\|A0A1S3CTY9_CUCME	1.5e-17	88.14	U-box domain-containing protein 3-like OS=Cucumis melo OX=3656 GN=LOC103504507 P...	[more]
tr\|A0A2P4IT93\|A0A2P4IT93_QUESU	1.6e-16	76.67	U-box domain-containing protein 2 OS=Quercus suber OX=58331 GN=CFP56_31844 PE=4 ...	[more]
tr\|A0A0B2SDD9\|A0A0B2SDD9_GLYSO	1.8e-15	78.33	U-box domain-containing protein 2 OS=Glycine soja OX=3848 GN=glysoja_042030 PE=4...	[more]
tr\|A0A1S3CFT8\|A0A1S3CFT8_CUCME	1.2e-14	91.84	tetraspanin-8-like OS=Cucumis melo OX=3656 GN=LOC103500450 PE=4 SV=1	[more]
tr\|A0A2I4F9U2\|A0A2I4F9U2_9ROSI	4.4e-14	75.00	U-box domain-containing protein 2-like OS=Juglans regia OX=51240 GN=LOC108996845...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

Vocabulary: **INTERPRO**
Term	Definition
IPR016024	ARM-type_fold

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034797.2.1	MELO3C034797.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.25.10.110		coord: 1..62 e-value: 3.6E-5 score: 25.6
None	No IPR available	PANTHER	PTHR23315:SF129	ARMADILLO/BETA-CATENIN-LIKE REPEAT-CONTAINING PROTEIN	coord: 2..61
None	No IPR available	PANTHER	PTHR23315	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	coord: 2..61
IPR016024	Armadillo-type fold	SUPERFAMILY	SSF48371	ARM repeat	coord: 2..60

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C034797.2	Cucurbita moschata (Rifu)	cmomedB564
MELO3C034797.2	Cucurbita moschata (Rifu)	cmomedB621
MELO3C034797.2	Cucurbita pepo (Zucchini)	cpemedB308
MELO3C034797.2	Cucurbita pepo (Zucchini)	cpemedB792
MELO3C034797.2	Wild cucumber (PI 183967)	cpimedB436
MELO3C034797.2	Wild cucumber (PI 183967)	cpimedB504
MELO3C034797.2	Cucumber (Chinese Long) v2	cumedB427
MELO3C034797.2	Cucumber (Chinese Long) v2	cumedB494
MELO3C034797.2	Melon (DHL92) v3.6.1	medmedB044
MELO3C034797.2	Bottle gourd (USVL1VR-Ls)	lsimedB050
MELO3C034797.2	Bottle gourd (USVL1VR-Ls)	lsimedB091
MELO3C034797.2	Watermelon (Charleston Gray)	medwcgB091
MELO3C034797.2	Watermelon (97103) v1	medwmB108
MELO3C034797.2	Silver-seed gourd	carmedB0029
MELO3C034797.2	Silver-seed gourd	carmedB0421
MELO3C034797.2	Silver-seed gourd	carmedB0727
MELO3C034797.2	Cucumber (Chinese Long) v3	cucmedB440
MELO3C034797.2	Cucumber (Chinese Long) v3	cucmedB519
MELO3C034797.2	Watermelon (97103) v2	medwmbB092
MELO3C034797.2	Wax gourd	medwgoB111
MELO3C034797.2	Wax gourd	medwgoB135
MELO3C034797.2	Cucumber (Gy14) v2	cgybmedB386
MELO3C034797.2	Cucumber (Gy14) v1	cgymedB175
MELO3C034797.2	Cucumber (Gy14) v1	cgymedB244
MELO3C034797.2	Cucurbita maxima (Rimu)	cmamedB576
MELO3C034797.2	Cucurbita maxima (Rimu)	cmamedB633