MELO3C034797.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C034797.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionRING-type E3 ubiquitin transferase
Locationchr11 : 19147731 .. 19147968 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCTGAGTAGCCTGGCTGGGATTCAAGAGGGAAAGGATGCGATTATGGAAGAGGGTGGAATTGTTGCGCTTCTAGAAGCAATTGAAGATGGGTCGGTGAAATGGAAAGAATTTGCAGTGTTGACACTCTTGCAATTGTGTGTTGAGAGTGTGAGAAATCGAGGGTTACTCGTCAGGTGGAATTCCCCCTTTAGTTGCACTTTCTCATACTGGAAGCGTTCGAGCAAAGCATAAG

mRNA sequence

ATGCTTCTGAGTAGCCTGGCTGGGATTCAAGAGGGAAAGGATGCGATTATGGAAGAGGGTGGAATTGTTGCGCTTCTAGAAGCAATTGAAGATGGGTCGGTGAAATGGAAAGAATTTGCAGTGTTGACACTCTTGCAATTGTGTGTTGAGAGTGTGAGAAATCGAGGGTTACTCGTCAGGTGGAATTCCCCCTTTAGTTGCACTTTCTCATACTGGAAGCGTTCGAGCAAAGCATAAG

Coding sequence (CDS)

ATGCTTCTGAGTAGCCTGGCTGGGATTCAAGAGGGAAAGGATGCGATTATGGAAGAGGGTGGAATTGTTGCGCTTCTAGAAGCAATTGAAGATGGGTCGGTGAAATGGAAAGAATTTGCAGTGTTGACACTCTTGCAATTGTGTGTTGAGAGTGTGAGAAATCGAGGGTTACTCGTCAGGTGGAATTCCCCCTTTAGTTGCACTTTCTCATACTGGAAGCGTTCGAGCAAAGCATAA

Protein sequence

MLLSSLAGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVESVRNRGLLVRWNSPFSCTFSYWKRSSKA
BLAST of MELO3C034797.2 vs. NCBI nr
Match: XP_008467070.1 (PREDICTED: U-box domain-containing protein 3-like [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 2.2e-17
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = 0

Query: 1  MLLSSLAGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVESVRNRGLLV 60
          MLLSSLAGIQEGKDAI+EEGGI AL+EAIEDG VK KEFAVLTLLQLCVESVR+ GLLV
Sbjct: 1  MLLSSLAGIQEGKDAIVEEGGIAALVEAIEDGLVKGKEFAVLTLLQLCVESVRDPGLLV 59

BLAST of MELO3C034797.2 vs. NCBI nr
Match: POE71741.1 (u-box domain-containing protein 2 [Quercus suber])

HSP 1 Score: 94.0 bits (232), Expect = 2.5e-16
Identity = 46/60 (76.67%), Postives = 56/60 (93.33%), Query Frame = 0

Query: 1  MLLSSLAGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVESVRNRGLLVR 60
          ++LSSLAG++EGK+AI+EEGGI  L+EAIEDG+VK KEFAV+TLLQLC +SVRNRGLLVR
Sbjct: 40 VVLSSLAGVEEGKEAIVEEGGIAVLVEAIEDGTVKGKEFAVVTLLQLCADSVRNRGLLVR 99

BLAST of MELO3C034797.2 vs. NCBI nr
Match: KHN40819.1 (U-box domain-containing protein 2 [Glycine soja])

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 47/56 (83.93%), Postives = 53/56 (94.64%), Query Frame = 0

Query: 1  MLLSSLAGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVESVRNRG 57
          ++L+SLAGIQEGKDAI+EEGGI AL+EAIEDGSVK KEFAVLTLLQLCV+SV NRG
Sbjct: 2  VVLNSLAGIQEGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCVDSVINRG 57

BLAST of MELO3C034797.2 vs. NCBI nr
Match: KHN42282.1 (U-box domain-containing protein 2 [Glycine soja])

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-15
Identity = 47/60 (78.33%), Postives = 54/60 (90.00%), Query Frame = 0

Query: 1  MLLSSLAGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVESVRNRGLLVR 60
          ++L+SLAGI+EGK+AI+EEGGI ALLEAIEDGSVK KEFAVLTL+QLC  SV NR LLVR
Sbjct: 7  VVLNSLAGIEEGKEAIVEEGGIGALLEAIEDGSVKGKEFAVLTLVQLCAHSVANRALLVR 66

BLAST of MELO3C034797.2 vs. NCBI nr
Match: XP_010539196.1 (PREDICTED: U-box domain-containing protein 4-like [Tarenaya hassleriana])

HSP 1 Score: 89.4 bits (220), Expect = 6.0e-15
Identity = 45/60 (75.00%), Postives = 54/60 (90.00%), Query Frame = 0

Query: 1   MLLSSLAGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVESVRNRGLLVR 60
           ++LSSLA I+EGK+AI+EE GI  L+EAIEDGSVK KEFAVLTLLQLC +++RNRGLLVR
Sbjct: 351 VVLSSLAAIEEGKEAIVEERGIAVLVEAIEDGSVKEKEFAVLTLLQLCADNIRNRGLLVR 410

BLAST of MELO3C034797.2 vs. TAIR10
Match: AT5G67340.1 (ARM repeat superfamily protein)

HSP 1 Score: 51.2 bits (121), Expect = 3.3e-07
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 0

Query: 1   MLLSSLAGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVES 52
           ++L++LA ++EGK AI EEGGI  L+E +E GS + KE A   LLQLC  S
Sbjct: 608 VVLANLATVREGKIAIGEEGGIPVLVEVVELGSARGKENATAALLQLCTHS 658

BLAST of MELO3C034797.2 vs. TAIR10
Match: AT3G54790.1 (ARM repeat superfamily protein)

HSP 1 Score: 47.8 bits (112), Expect = 3.7e-06
Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 2   LLSSLAGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVES 52
           LL++L+ + EG+ AI+ EGGI  L+E ++ GS + KE A   LLQLC+ S
Sbjct: 660 LLANLSAVGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNS 709

BLAST of MELO3C034797.2 vs. Swiss-Prot
Match: sp|Q5XEZ8|PUB2_ARATH (U-box domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PUB2 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.0e-06
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 0

Query: 1   MLLSSLAGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVES 52
           ++L++LA ++EGK AI EEGGI  L+E +E GS + KE A   LLQLC  S
Sbjct: 608 VVLANLATVREGKIAIGEEGGIPVLVEVVELGSARGKENATAALLQLCTHS 658

BLAST of MELO3C034797.2 vs. Swiss-Prot
Match: sp|Q8GWV5|PUB3_ARATH (U-box domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PUB3 PE=2 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 6.6e-05
Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 2   LLSSLAGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVES 52
           LL++L+ + EG+ AI+ EGGI  L+E ++ GS + KE A   LLQLC+ S
Sbjct: 660 LLANLSAVGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNS 709

BLAST of MELO3C034797.2 vs. TrEMBL
Match: tr|A0A1S3CTY9|A0A1S3CTY9_CUCME (U-box domain-containing protein 3-like OS=Cucumis melo OX=3656 GN=LOC103504507 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-17
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = 0

Query: 1  MLLSSLAGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVESVRNRGLLV 60
          MLLSSLAGIQEGKDAI+EEGGI AL+EAIEDG VK KEFAVLTLLQLCVESVR+ GLLV
Sbjct: 1  MLLSSLAGIQEGKDAIVEEGGIAALVEAIEDGLVKGKEFAVLTLLQLCVESVRDPGLLV 59

BLAST of MELO3C034797.2 vs. TrEMBL
Match: tr|A0A2P4IT93|A0A2P4IT93_QUESU (U-box domain-containing protein 2 OS=Quercus suber OX=58331 GN=CFP56_31844 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-16
Identity = 46/60 (76.67%), Postives = 56/60 (93.33%), Query Frame = 0

Query: 1  MLLSSLAGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVESVRNRGLLVR 60
          ++LSSLAG++EGK+AI+EEGGI  L+EAIEDG+VK KEFAV+TLLQLC +SVRNRGLLVR
Sbjct: 40 VVLSSLAGVEEGKEAIVEEGGIAVLVEAIEDGTVKGKEFAVVTLLQLCADSVRNRGLLVR 99

BLAST of MELO3C034797.2 vs. TrEMBL
Match: tr|A0A0B2SDD9|A0A0B2SDD9_GLYSO (U-box domain-containing protein 2 OS=Glycine soja OX=3848 GN=glysoja_042030 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.8e-15
Identity = 47/60 (78.33%), Postives = 54/60 (90.00%), Query Frame = 0

Query: 1  MLLSSLAGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVESVRNRGLLVR 60
          ++L+SLAGI+EGK+AI+EEGGI ALLEAIEDGSVK KEFAVLTL+QLC  SV NR LLVR
Sbjct: 7  VVLNSLAGIEEGKEAIVEEGGIGALLEAIEDGSVKGKEFAVLTLVQLCAHSVANRALLVR 66

BLAST of MELO3C034797.2 vs. TrEMBL
Match: tr|A0A1S3CFT8|A0A1S3CFT8_CUCME (tetraspanin-8-like OS=Cucumis melo OX=3656 GN=LOC103500450 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-14
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 0

Query: 7   AGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVESVRNR 56
           AGIQEGKDAI+EEGGI AL+EAIEDGSVK KEFAVLTLLQLCVESVRNR
Sbjct: 156 AGIQEGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCVESVRNR 204

BLAST of MELO3C034797.2 vs. TrEMBL
Match: tr|A0A2I4F9U2|A0A2I4F9U2_9ROSI (U-box domain-containing protein 2-like OS=Juglans regia OX=51240 GN=LOC108996845 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.4e-14
Identity = 42/56 (75.00%), Postives = 51/56 (91.07%), Query Frame = 0

Query: 1  MLLSSLAGIQEGKDAIMEEGGIVALLEAIEDGSVKWKEFAVLTLLQLCVESVRNRG 57
          ++LSSLAGI+EG+ AI+EEGGI  L+EAIEDGS+K KEFAV+TLLQLC +SVRNRG
Sbjct: 7  VVLSSLAGIEEGRQAIVEEGGIAVLVEAIEDGSLKGKEFAVVTLLQLCADSVRNRG 62

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008467070.12.2e-1788.14PREDICTED: U-box domain-containing protein 3-like [Cucumis melo][more]
POE71741.12.5e-1676.67u-box domain-containing protein 2 [Quercus suber][more]
KHN40819.11.2e-1583.93U-box domain-containing protein 2 [Glycine soja][more]
KHN42282.12.7e-1578.33U-box domain-containing protein 2 [Glycine soja][more]
XP_010539196.16.0e-1575.00PREDICTED: U-box domain-containing protein 4-like [Tarenaya hassleriana][more]
Match NameE-valueIdentityDescription
AT5G67340.13.3e-0752.94ARM repeat superfamily protein[more]
AT3G54790.13.7e-0648.00ARM repeat superfamily protein[more]
Match NameE-valueIdentityDescription
sp|Q5XEZ8|PUB2_ARATH6.0e-0652.94U-box domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PUB2 PE=2 S... [more]
sp|Q8GWV5|PUB3_ARATH6.6e-0548.00U-box domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PUB3 PE=2 S... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3CTY9|A0A1S3CTY9_CUCME1.5e-1788.14U-box domain-containing protein 3-like OS=Cucumis melo OX=3656 GN=LOC103504507 P... [more]
tr|A0A2P4IT93|A0A2P4IT93_QUESU1.6e-1676.67U-box domain-containing protein 2 OS=Quercus suber OX=58331 GN=CFP56_31844 PE=4 ... [more]
tr|A0A0B2SDD9|A0A0B2SDD9_GLYSO1.8e-1578.33U-box domain-containing protein 2 OS=Glycine soja OX=3848 GN=glysoja_042030 PE=4... [more]
tr|A0A1S3CFT8|A0A1S3CFT8_CUCME1.2e-1491.84tetraspanin-8-like OS=Cucumis melo OX=3656 GN=LOC103500450 PE=4 SV=1[more]
tr|A0A2I4F9U2|A0A2I4F9U2_9ROSI4.4e-1475.00U-box domain-containing protein 2-like OS=Juglans regia OX=51240 GN=LOC108996845... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0005575 cellular_component
molecular_function GO:0016740 transferase activity
molecular_function GO:0004842 ubiquitin-protein transferase activity
molecular_function GO:0005488 binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034797.2.1MELO3C034797.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.25.10.110coord: 1..62
e-value: 3.6E-5
score: 25.6
NoneNo IPR availablePANTHERPTHR23315:SF129ARMADILLO/BETA-CATENIN-LIKE REPEAT-CONTAINING PROTEINcoord: 2..61
NoneNo IPR availablePANTHERPTHR23315BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAININGcoord: 2..61
IPR016024Armadillo-type foldSUPERFAMILYSSF48371ARM repeatcoord: 2..60

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None