MELO3C034793.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C034793.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionGag-protease polyprotein
Locationchr11 : 6248048 .. 6251914 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTCAGTCAAAATGTTAAATTCAGGAACTAAAAATCTAGATCAAATACTGAATTCAGGACAGTCTAGTTTCAACCATTGTGGTCTTAGCTTCAATTCGTCAGTAAAGAGCACTAGTCAAGCAAATGGGATAAAATTTGTTTCTGCTACTATAAGCAACAATTCTAATCAACCTGTTGAAACAAAAGTTATTACCTCTTCCACAAAAACAAATAATTGGGTGTGAGATTATTGTGGTAAAAAAGGTCATATTCGTCCTTTTTGCTATGCATTACAAAGGTATAAATTCAATTATCGGAAAGCTACTTATCGCTCATAGAAGCATAAACTAAACTCATTTACTCTAAGAGGCAAGAGAAGTTATAAGGAATGGAGAGTCAAGAATTCATGTAAATGTAATATTGTCTTTACAACAGTTCAATCTTCAACTGATGCTTGGTATTTTGATAATGGTTGTTCCAGTCACATGACTGGAAATAAATCCTTTTTTTCTAAACTAAAAAAGTGTACATCTGGACATGTTACGTTTGGAGGTGGTGCAAAAGGAAGAATCCTTGCAAAAGAAAATATTAAAAAATATAATCTACTATGTCTAAATAATGTACGATATGTTGAAGGGTTCAAGGCAAACCTAATTAGTGTCAGTCAACTATGTGATCAAGGCTATATCGTTAATTTTAGCAAGGAAGAATGCATTGTGACTGATATTAATAAAAGTGTTCTTATGAGTGGCACCAGACAGATTGATAACTGCCATCACTGGGTGTCTAATAATAACCATTCATTTATCTAAAGAAGATCAAACGCATTGCTGATGAAGTGAATGTATCAAATGAACATCACTCATGTTTGAGTATCATGGATTTCTAGGAATCACTGTGGTGGCAAGCTCTCAGTCTTCGCATCTATCTAATAATGAATTGGCTTCTGTTTTATCTCAAGGAACGTTGTCAACTTGGCTGGTGAATGAAATTTTTGTTGTATCCCTTAGTGTTAAATATGTCATACTCCATAAGATTGACATTACAAACTAGTTTCTTTTGTTGCATGCTTCCAGTGCAACTGATCAGTCTCAAGAGTAGATATTCTTTTATGTTCAAAGGGGGAGAAGAGTTTTGTGCAAAAAGTTGTTTTTGATGGGCCACCAGAAGGAGAAGCTGAAGTTTGTTTGTTTTTTTTTTTAAGTAGCTTATATGATTATTATTAATGTTGATTGAAGAGTTTTGTGCATATTTTGTTTTTTATGGATTAAGGAGTTTGTGGTAGATGTGCTTATTCTGTTTTGGGTCAAAAGAGCAGTACATTTTGTCTCTGTGATTTGCCCTATGTTTTTATGCTTCTAGTGATGATGTTTCTAGTGATGTATGTTTTGACTTCTACAATGGCTTCAGTTTTAACTATTATCAGTTTGATGTTGTTTGTTGAGTTCTTGTTGATATATGCTTCTGGAAGTCTCTGTGTCTCAAGATGGTTTTATATCTATTCTTTGAATTCCTATTGATGATATTTTATTATGGGCATCTGGTTGAACATAAAAAAAATTCTTCTCTTTTTGACAAAAATGGGAGTTTGTTGAGATTTTTGTTAAAAAGAATTAATGAGATTCTTTTTATTATTTAAAGATTATTTAAAAAAGCTTAAAAAGATAAAATATCTTCCTCATAAATGGGAATCTTTTATCTATATCTTTTAAAGAAGATCTCGAAGATTTGATAGAGTAGTTATGTATTGAAGCTCTATGCTTGGTACGGTGTGGGCATTACTGAACATTTAATTTGAAAGCATTACAAACTAGTCTCTTTATATATAATCAGCTTTTGAGACATGTGGGAACATTTGATGTTAAGATTCCTATCCCTATACCTTATTTCTTCTTAAGTCTTCTGGTTCATCTGACTGCTGATATCTAACCCCAAATGATGCTCCTGGTCCTGACCCAAAGACATTGTCATTAAGCTACAGGCTATTTCAAAGAAGTCATGTTCCTACCTTTTAGGAACCCCCGTATGGGAATGATGTAGATGAGAATGTTGAAGGGTTCTTTGTATTCATCGTGACTTAGCCTCCAGAATAATTAATATGCTTACAGCTAAGTCTCGAGTTCTTTCAACATCTATAAATCTGATGTTTGATAGAAGATTTGAGATTTGATTCACTTGTTCATCACCTGAAGACACTTATTCCCTCTTCTAGTACTAGTGCTCTAGATCAGGAGTAGTATTTCTTTTCTGTTCAAAGAGGGAGAAGTTGTGAAGATAAGGGGCAAGAGTAGTTGTAGCAAATCGATATTCTGAAGTTGTTTATGTTGTTGTTTCTGTTGAAGTTGTACAGTTTAGATGTTGTTTTGAAGTCTGTTTTTATTGAAGCTTTGAAGATATTTTGAAGTTATTCTTTTTTTTTTTAAAAAGATTGTAAGAGACACATATGAGGTTATATAATCGTATGATGTGTTTTTCTATTGTAGTACTTGCTATATGGTAGAGAAAAGAAATGATGATGTTCTGAAGTGTATGATTTTGTGATGATCTGTTGATGATTGTGTTGATCTGCTGTGTTGTTATGTGGTTGAATATTGACGTTTGCTGACTGTTGCTTTATTGGAAGTCTTTGAGAAGCATTGACTTGAACTTGAAAAGAAATCTCCTCTTTTTGACAAAACGGGGAGTTTGTTTTGATTTTGTCAAAAAGATTTTCTTTTTTATTAATGAGTTATTTACTTCCAAAAAGATAAAAGATCATCTTTTATTTTAAAAATCTTATATGATTATCTTTTTTAGATTGTTCTTGAGGAAATATATATATATAGACTACGAAACTTGTGGGTTCTGGTACAACTGACGAACATAGAAAACTTTTGGAGCTGTTATTCGAATTTGCATTGCAGTAACTATGAGCGGAAGAAGGTAGTGTAATTATCTATCTATGGTCTCAACGTGTTGACCTGTGATGAACTTCATGATGAGTACTAATGTGAAAGAAGAAGTAGTGATCAAGAGATCACCTTAAACTCTTGGGAGTATGAAGACATCTTCAAGAAAATTCACTCATATGTTCAAGGGAGCCTGAATTCTTAAGTTATTAAGTACTTTAAGATAGTCATATATTTGAGGAGAATATCAGTTGCTGTATTGATGTATATTGACTATTATGAATCTTAATAATATTATTCATATGAGCTGTGCGCAACTTCTCAAACGAAGGTAATATTTGTCGAACTAGGTTACCAAAGTTTTATGTATTATTTATTTCTACTATCCCTCTAGCTAATACATCAGTTAATTATTTTAGAATTAACTAGAGGATATTCTGATTATCTCATAACTTTTTCAAAGTTTCTTCCCATCGATATTGATTTTTTAAAATAATCTGCTTTGAGCCCATATTCCAACTTTTCGAAACCAATAACTGTGTTTAAAATATCTTAGAATTAAAATATGGATACGAAGATTTCAATTTTACAAAATGTATTAGTTGATTTTGTTATTAATACTTTTGTTAATATTGGATTAAACCCATCGTATTTTTAAGTTTTACAAGTATTTAGAAAGAATGTTGAAAGAAATCTTCCTGACTGATTTAAATATTGACAAGCATATTTTCATTTGACTGTGGTTTTGGTATCTCTATATAAAATGAAAGTGGCAGCCACCAAGCAAAAGACAATTCTCAATTATACTTTATTATAAAAATTAAATAAATAAATAAAGTCACGTTATGTATAACATAATATAATAAACGCAACCACTAGTCGGTTCTTGCACCAAATCTCATGCATGCATGGATTTTTTTTTTTTTTTTCTTTTTAATCTTTTAGATTTGTTACCGACTCCCTTTTAGATTTGTTACTACTCCAACGGAATTTTAG

mRNA sequence

ATGAAGTCAGTCAAAATGTTAAATTCAGGAACTAAAAATCTAGATCAAATACTGAATTCAGGACAGTCTAGTTTCAACCATTGTGGTCTTAGCTTCAATTCGTCAGTAAAGAGCACTAGTCAAGCAAATGGGATAAAATTTGTTTCTGCTACTATAAGCAACAATTCTAATCAACCTGTTGAAACAAAAGGGGAGAAGAGTTTTGTGCAAAAAGTTGTTTTTGATGGGCCACCAGAAGGAGAAGCTGAAATTGTAAGAGACACATATGAGATTTGTTACCGACTCCCTTTTAGATTTGTTACTACTCCAACGGAATTTTAG

Coding sequence (CDS)

ATGAAGTCAGTCAAAATGTTAAATTCAGGAACTAAAAATCTAGATCAAATACTGAATTCAGGACAGTCTAGTTTCAACCATTGTGGTCTTAGCTTCAATTCGTCAGTAAAGAGCACTAGTCAAGCAAATGGGATAAAATTTGTTTCTGCTACTATAAGCAACAATTCTAATCAACCTGTTGAAACAAAAGGGGAGAAGAGTTTTGTGCAAAAAGTTGTTTTTGATGGGCCACCAGAAGGAGAAGCTGAAATTGTAAGAGACACATATGAGATTTGTTACCGACTCCCTTTTAGATTTGTTACTACTCCAACGGAATTTTAG

Protein sequence

MKSVKMLNSGTKNLDQILNSGQSSFNHCGLSFNSSVKSTSQANGIKFVSATISNNSNQPVETKGEKSFVQKVVFDGPPEGEAEIVRDTYEICYRLPFRFVTTPTEF
Homology
[Close]
BLAST of MELO3C034793.2 vs. NCBI nr
Match: XP_008444307.1 (PREDICTED: uncharacterized protein LOC103487675 [Cucumis melo])

HSP 1 Score: 56.6 bits (135), Expect = 5.9e-05
Identity = 30/63 (47.62%), Postives = 44/63 (69.84%), Query Frame = 0 

Query: 1   MKSVKMLNSGTKNLDQILNSGQSSFNHCGLSFNSSVKSTSQANGIKFVSATISNNSNQPV 60
           +KSVKMLNSGT+NLD ILNSGQ+  N  GL F++S +  +    I FV A++++ ++  +
Sbjct: 322 LKSVKMLNSGTENLDVILNSGQNGLNRHGLGFDTSARKINTTTEINFVPASVNDKTDTVM 381

Query: 61  ETK 64
            TK
Sbjct: 382 ATK 384

[Close]
BLAST of MELO3C034793.2 vs. TrEMBL
Match: tr|A0A1S3BAW0|A0A1S3BAW0_CUCME (uncharacterized protein LOC103487675 OS=Cucumis melo OX=3656 GN=LOC103487675 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.9e-05
Identity = 30/63 (47.62%), Postives = 44/63 (69.84%), Query Frame = 0 

Query: 1   MKSVKMLNSGTKNLDQILNSGQSSFNHCGLSFNSSVKSTSQANGIKFVSATISNNSNQPV 60
           +KSVKMLNSGT+NLD ILNSGQ+  N  GL F++S +  +    I FV A++++ ++  +
Sbjct: 322 LKSVKMLNSGTENLDVILNSGQNGLNRHGLGFDTSARKINTTTEINFVPASVNDKTDTVM 381

Query: 61  ETK 64
            TK
Sbjct: 382 ATK 384

The following BLAST results are available for this feature:
BLAST of MELO3C034793.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008444307.15.9e-0547.62PREDICTED: uncharacterized protein LOC103487675 [Cucumis melo][more]
BLAST of MELO3C034793.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C034793.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C034793.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BAW0|A0A1S3BAW0_CUCME3.9e-0547.62uncharacterized protein LOC103487675 OS=Cucumis melo OX=3656 GN=LOC103487675 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008233 peptidase activity
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034793.2.1MELO3C034793.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C034793.2Cucumber (Gy14) v2cgybmedB076
MELO3C034793.2Cucumber (Gy14) v1cgymedB526
MELO3C034793.2Cucurbita maxima (Rimu)cmamedB582
MELO3C034793.2Cucurbita maxima (Rimu)cmamedB614
MELO3C034793.2Cucurbita moschata (Rifu)cmomedB570
MELO3C034793.2Cucurbita moschata (Rifu)cmomedB604
MELO3C034793.2Cucurbita pepo (Zucchini)cpemedB295
MELO3C034793.2Cucurbita pepo (Zucchini)cpemedB796
MELO3C034793.2Wild cucumber (PI 183967)cpimedB084
MELO3C034793.2Cucumber (Chinese Long) v2cumedB084
MELO3C034793.2Bottle gourd (USVL1VR-Ls)lsimedB049
MELO3C034793.2Watermelon (Charleston Gray)medwcgB072
MELO3C034793.2Silver-seed gourdcarmedB0805
MELO3C034793.2Silver-seed gourdcarmedB1033
MELO3C034793.2Silver-seed gourdcarmedB1035
MELO3C034793.2Cucumber (Chinese Long) v3cucmedB091
MELO3C034793.2Watermelon (97103) v2medwmbB119
MELO3C034793.2Watermelon (97103) v2medwmbB123