MELO3C034790.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C034790.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Calcium-binding EF-hand
Location	chr11 : 6221763 .. 6222741 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAACAGATGGGTAGATCACGGCCAGCCCCGTGACGCCAATGTTGTAGCAATAGCCGATGTTGCTTGTTTCAGAACAGAAATTGTGTATACAATAAGGTTCTTTATTTTTATGTCTATTTACATGTGTTTCTTTAATTTTCTAACATCTAAATAAAAGCTTCATAATGAACACAATTTTTGTCTAGTTGTCAATGGTTGTGGATAAGTTACACGACAAAACTTACTATAATATTGTGACTTACGCTTTTGAATTTACTCATAGTTCGAACATGATATTAGACTAAGAGGTGCTCTAGTAAACAAACCTTAACAATATTGTTCTATTTGTTGGACAATAATCTATGTTAAACAAACCTCAACTAATGTAGAGCTTGAACTAATCTAAGAAAGGAAAGAAAATAAGGGCTAATAGTTCATTTTCAAAATGTTGTTTATCGAATTAGAAAGATAAACTATTTCTTTTCCATTTTAAATTTATAGATGATCAGATTAAGGTAAAAAAAATTGTGAAAATGCAGCTCTGTGGGAGATCTCTATGAATATGATAGGAACTCAAAGCCTCTGTGGAAGAAGCATGTATGAAAAGATAGAGCAGCACAAGATCTTTGATTGATTCCATCGCGGGGTTGCTATATACATAGCTTGAATGGAGATCCTTCCATATCCCTCTTTCTTTTAACTAAGGTACTAAATAGAGAGAAATTCACCTTGCTATTGAGTTATTATGAACCTAAAAGGTTTCTGGATTTCTTGTATTAATCTTCATGTTCTAGATTTTCAGGGTCACATGATGAATGATACCATAGTTTTGAGGGCCTTAAATAGATTATTGATGTCGTGAATTGCAGGCAGATAGTGATGATGATGGACTCCTGACCTTGAAAGATATGATTGAGAACCCATTTGTGTTCTATAGCTCTGTTTTTAGTGAAGATGAGATGAATTATTATCCACACCACGATGAATTTTGTTAG

mRNA sequence

ATGAATAACAGATGGGTAGATCACGGCCAGCCCCGTGACGCCAATGTTGTAGCAATAGCCGATGTTGCTTGTTTCAGAACAGAAATTGTGTATACAATAAGCTCTGTGGGAGATCTCTATGAATATGATAGGAACTCAAAGCCTCTGTGGAAGAAGCATGCAGATAGTGATGATGATGGACTCCTGACCTTGAAAGATATGATTGAGAACCCATTTGTGTTCTATAGCTCTGTTTTTAGTGAAGATGAGATGAATTATTATCCACACCACGATGAATTTTGTTAG

Coding sequence (CDS)

ATGAATAACAGATGGGTAGATCACGGCCAGCCCCGTGACGCCAATGTTGTAGCAATAGCCGATGTTGCTTGTTTCAGAACAGAAATTGTGTATACAATAAGCTCTGTGGGAGATCTCTATGAATATGATAGGAACTCAAAGCCTCTGTGGAAGAAGCATGCAGATAGTGATGATGATGGACTCCTGACCTTGAAAGATATGATTGAGAACCCATTTGTGTTCTATAGCTCTGTTTTTAGTGAAGATGAGATGAATTATTATCCACACCACGATGAATTTTGTTAG

Protein sequence

MNNRWVDHGQPRDANVVAIADVACFRTEIVYTISSVGDLYEYDRNSKPLWKKHADSDDDGLLTLKDMIENPFVFYSSVFSEDEMNYYPHHDEFC

Homology

[Close]

BLAST of MELO3C034790.2 vs. NCBI nr
Match: XP_008450399.1 (PREDICTED: uncharacterized protein LOC103492016 isoform X1 [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 3.4e-20
Identity = 49/54 (90.74%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 4   RWVDHGQPRDANVVAIADVACFRTEIVYTISSVGDLYEYDRNSKPLWKKHADSD 58
           RWVDHGQPRDANV AIADVA FRTEIVYTISSVGDLYEYDRNSKPLWKKH   D
Sbjct: 244 RWVDHGQPRDANVAAIADVASFRTEIVYTISSVGDLYEYDRNSKPLWKKHVWKD 297

[Close]

BLAST of MELO3C034790.2 vs. NCBI nr
Match: XP_008450400.1 (PREDICTED: uncharacterized protein LOC103492016 isoform X2 [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 3.4e-20
Identity = 49/54 (90.74%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 4   RWVDHGQPRDANVVAIADVACFRTEIVYTISSVGDLYEYDRNSKPLWKKHADSD 58
           RWVDHGQPRDANV AIADVA FRTEIVYTISSVGDLYEYDRNSKPLWKKH   D
Sbjct: 244 RWVDHGQPRDANVAAIADVASFRTEIVYTISSVGDLYEYDRNSKPLWKKHVWKD 297

[Close]

BLAST of MELO3C034790.2 vs. NCBI nr
Match: XP_008450401.1 (PREDICTED: uncharacterized protein LOC103492016 isoform X3 [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 3.4e-20
Identity = 49/54 (90.74%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 4   RWVDHGQPRDANVVAIADVACFRTEIVYTISSVGDLYEYDRNSKPLWKKHADSD 58
           RWVDHGQPRDANV AIADVA FRTEIVYTISSVGDLYEYDRNSKPLWKKH   D
Sbjct: 242 RWVDHGQPRDANVAAIADVASFRTEIVYTISSVGDLYEYDRNSKPLWKKHVWKD 295

[Close]

BLAST of MELO3C034790.2 vs. NCBI nr
Match: XP_011660143.1 (PREDICTED: uncharacterized protein LOC101214470 isoform X2 [Cucumis sativus] >KGN66503.1 hypothetical protein Csa_1G615710 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 3.4e-20
Identity = 49/54 (90.74%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 4   RWVDHGQPRDANVVAIADVACFRTEIVYTISSVGDLYEYDRNSKPLWKKHADSD 58
           RWVDHGQPRDANV AIADVA FRTEIVYTISSVGDLYEYDRNSKPLWKKH   D
Sbjct: 244 RWVDHGQPRDANVAAIADVASFRTEIVYTISSVGDLYEYDRNSKPLWKKHVWKD 297

[Close]

BLAST of MELO3C034790.2 vs. NCBI nr
Match: XP_011660142.1 (PREDICTED: uncharacterized protein LOC101214470 isoform X1 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 3.4e-20
Identity = 49/54 (90.74%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 4   RWVDHGQPRDANVVAIADVACFRTEIVYTISSVGDLYEYDRNSKPLWKKHADSD 58
           RWVDHGQPRDANV AIADVA FRTEIVYTISSVGDLYEYDRNSKPLWKKH   D
Sbjct: 244 RWVDHGQPRDANVAAIADVASFRTEIVYTISSVGDLYEYDRNSKPLWKKHVWKD 297

[Close]

BLAST of MELO3C034790.2 vs. TAIR10
Match: AT5G08580.1 (Calcium-binding EF hand family protein)

HSP 1 Score: 48.9 bits (115), Expect = 2.0e-06
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 54  ADSDDDGLLTLKDMIENPFVFYSSVFSEDEM-NYYPHHDEF 94
           ADSD D  LTL +MIE+P+VFYS++F ED+  + Y  HDEF
Sbjct: 350 ADSDKDRRLTLAEMIEHPYVFYSAIFDEDDTDDDYGFHDEF 390

[Close]

BLAST of MELO3C034790.2 vs. TrEMBL
Match: tr|A0A1S3BP44|A0A1S3BP44_CUCME (uncharacterized protein LOC103492016 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492016 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.2e-20
Identity = 49/54 (90.74%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 4   RWVDHGQPRDANVVAIADVACFRTEIVYTISSVGDLYEYDRNSKPLWKKHADSD 58
           RWVDHGQPRDANV AIADVA FRTEIVYTISSVGDLYEYDRNSKPLWKKH   D
Sbjct: 244 RWVDHGQPRDANVAAIADVASFRTEIVYTISSVGDLYEYDRNSKPLWKKHVWKD 297

[Close]

BLAST of MELO3C034790.2 vs. TrEMBL
Match: tr|A0A1S3BPT4|A0A1S3BPT4_CUCME (uncharacterized protein LOC103492016 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492016 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.2e-20
Identity = 49/54 (90.74%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 4   RWVDHGQPRDANVVAIADVACFRTEIVYTISSVGDLYEYDRNSKPLWKKHADSD 58
           RWVDHGQPRDANV AIADVA FRTEIVYTISSVGDLYEYDRNSKPLWKKH   D
Sbjct: 244 RWVDHGQPRDANVAAIADVASFRTEIVYTISSVGDLYEYDRNSKPLWKKHVWKD 297

[Close]

BLAST of MELO3C034790.2 vs. TrEMBL
Match: tr|A0A1S3BQ58|A0A1S3BQ58_CUCME (uncharacterized protein LOC103492016 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103492016 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.2e-20
Identity = 49/54 (90.74%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 4   RWVDHGQPRDANVVAIADVACFRTEIVYTISSVGDLYEYDRNSKPLWKKHADSD 58
           RWVDHGQPRDANV AIADVA FRTEIVYTISSVGDLYEYDRNSKPLWKKH   D
Sbjct: 242 RWVDHGQPRDANVAAIADVASFRTEIVYTISSVGDLYEYDRNSKPLWKKHVWKD 295

[Close]

BLAST of MELO3C034790.2 vs. TrEMBL
Match: tr|A0A0A0LXP1|A0A0A0LXP1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G615710 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.2e-20
Identity = 49/54 (90.74%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 4   RWVDHGQPRDANVVAIADVACFRTEIVYTISSVGDLYEYDRNSKPLWKKHADSD 58
           RWVDHGQPRDANV AIADVA FRTEIVYTISSVGDLYEYDRNSKPLWKKH   D
Sbjct: 244 RWVDHGQPRDANVAAIADVASFRTEIVYTISSVGDLYEYDRNSKPLWKKHVWKD 297

[Close]

BLAST of MELO3C034790.2 vs. TrEMBL
Match: tr|A0A2N9H8W0|A0A2N9H8W0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35993 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.2e-15
Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 4   RWVDHGQPRDANVVAIADVACFRTEIVYTISSVGDLYEYDRNSKPLWKKH 54
           RWV+HG+P  ANV AIAD A  RTE+VYTISS+GDLYEYDR+SKP WKKH
Sbjct: 278 RWVNHGRPPGANVAAIADAATIRTEVVYTISSIGDLYEYDRSSKPSWKKH 327

The following BLAST results are available for this feature:

BLAST of MELO3C034790.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450399.1	3.4e-20	90.74	PREDICTED: uncharacterized protein LOC103492016 isoform X1 [Cucumis melo]	[more]
XP_008450400.1	3.4e-20	90.74	PREDICTED: uncharacterized protein LOC103492016 isoform X2 [Cucumis melo]	[more]
XP_008450401.1	3.4e-20	90.74	PREDICTED: uncharacterized protein LOC103492016 isoform X3 [Cucumis melo]	[more]
XP_011660143.1	3.4e-20	90.74	PREDICTED: uncharacterized protein LOC101214470 isoform X2 [Cucumis sativus] >KG...	[more]
XP_011660142.1	3.4e-20	90.74	PREDICTED: uncharacterized protein LOC101214470 isoform X1 [Cucumis sativus]	[more]

BLAST of MELO3C034790.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G08580.1	2.0e-06	58.54	Calcium-binding EF hand family protein	[more]

BLAST of MELO3C034790.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C034790.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BP44\|A0A1S3BP44_CUCME	2.2e-20	90.74	uncharacterized protein LOC103492016 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3BPT4\|A0A1S3BPT4_CUCME	2.2e-20	90.74	uncharacterized protein LOC103492016 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3BQ58\|A0A1S3BQ58_CUCME	2.2e-20	90.74	uncharacterized protein LOC103492016 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LXP1\|A0A0A0LXP1_CUCSA	2.2e-20	90.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G615710 PE=4 SV=1	[more]
tr\|A0A2N9H8W0\|A0A2N9H8W0_FAGSY	8.2e-15	76.00	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35993 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034790.2.1	MELO3C034790.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36893	FAMILY NOT NAMED	coord: 3..57

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C034790.2	Cucumber (Gy14) v2	cgybmedB076
MELO3C034790.2	Cucumber (Gy14) v1	cgymedB526
MELO3C034790.2	Cucurbita maxima (Rimu)	cmamedB582
MELO3C034790.2	Cucurbita maxima (Rimu)	cmamedB614
MELO3C034790.2	Cucurbita moschata (Rifu)	cmomedB570
MELO3C034790.2	Cucurbita moschata (Rifu)	cmomedB604
MELO3C034790.2	Cucurbita pepo (Zucchini)	cpemedB295
MELO3C034790.2	Cucurbita pepo (Zucchini)	cpemedB796
MELO3C034790.2	Wild cucumber (PI 183967)	cpimedB084
MELO3C034790.2	Cucumber (Chinese Long) v2	cumedB084
MELO3C034790.2	Bottle gourd (USVL1VR-Ls)	lsimedB049
MELO3C034790.2	Watermelon (Charleston Gray)	medwcgB072
MELO3C034790.2	Silver-seed gourd	carmedB0805
MELO3C034790.2	Silver-seed gourd	carmedB1033
MELO3C034790.2	Silver-seed gourd	carmedB1035
MELO3C034790.2	Cucumber (Chinese Long) v3	cucmedB091
MELO3C034790.2	Watermelon (97103) v2	medwmbB119
MELO3C034790.2	Watermelon (97103) v2	medwmbB123