MELO3C034787.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C034787.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	nodulin homeobox isoform X2
Location	chr11 : 18294265 .. 18294488 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACACAAACTTTACTAGAGAAAGGAATGGCATTAAGCAAATAGACATTGTTAATTCTTCTAAGACCAAAGAGAATGCCAAAGAAACTGAACAAGCTGGAAGTTTAGAGGAAGAGAAGCTTGAAAATGTTCACAGTGAATAGAAGATTAGAAGAAAACAAAAACAAATCGTAATGAATGAAAAGTAAATCTCAATAATTGAGAGAGCTCTCTTGGATGAACCTAAA

mRNA sequence

ACACAAACTTTACTAGAGAAAGGAATGGCATTAAGCAAATAGACATTGTTAATTCTTCTAAGACCAAAGAGAATGCCAAAGAAACTGAACAAGCTGGAAGTTTAGAGGAAGAGAAGCTTGAAAATGTTCACAGTGAATAGAAGATTAGAAGAAAACAAAAACAAATCGTAATGAATGAAAAGTAAATCTCAATAATTGAGAGAGCTCTCTTGGATGAACCTAAA

Coding sequence (CDS)

ACAAACTTTACTAGAGAAAGGAATGGCATTAAGCAAATAGACATTGTTAATTCTTCTAAGACCAAAGAGAATGCCAAAGAAACTGAACAAGCTGGAAGTTTAGAGGAAGAGAAGCTTGAAAATGTTCACAGTGAATAG

Protein sequence

TNFTRERNGIKQIDIVNSSKTKENAKETEQAGSLEEEKLENVHSE

Homology

[Close]

BLAST of MELO3C034787.2 vs. NCBI nr
Match: XP_011658036.1 (PREDICTED: uncharacterized protein LOC101207456 isoform X2 [Cucumis sativus] >XP_011658040.1 PREDICTED: uncharacterized protein LOC101207456 isoform X2 [Cucumis sativus] >KGN65698.1 hypothetical protein Csa_1G502860 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-08
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1   TNFTRERNGIKQIDIVNSSKTKENAKETEQAGSLEEEKLENVHSE 46
           TN  R RNGIKQ DIV+SSK+ ENAKETEQAGSLEEEK+ENVHSE
Sbjct: 653 TNSARGRNGIKQTDIVDSSKSNENAKETEQAGSLEEEKVENVHSE 697

[Close]

BLAST of MELO3C034787.2 vs. NCBI nr
Match: XP_011658033.1 (PREDICTED: uncharacterized protein LOC101207456 isoform X1 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-08
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1   TNFTRERNGIKQIDIVNSSKTKENAKETEQAGSLEEEKLENVHSE 46
           TN  R RNGIKQ DIV+SSK+ ENAKETEQAGSLEEEK+ENVHSE
Sbjct: 660 TNSARGRNGIKQTDIVDSSKSNENAKETEQAGSLEEEKVENVHSE 704

[Close]

BLAST of MELO3C034787.2 vs. NCBI nr
Match: XP_008457500.1 (PREDICTED: nodulin homeobox isoform X1 [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1   TNFTRERNGIKQIDIVNSSKTKENAKETEQAGSLEEEKLENVHSE 46
           TN TR RN IKQ DIV+SSK+ ENAKETEQAGSLEEEK+ENVHSE
Sbjct: 660 TNSTRGRNDIKQTDIVDSSKSNENAKETEQAGSLEEEKIENVHSE 704

[Close]

BLAST of MELO3C034787.2 vs. NCBI nr
Match: XP_008457501.1 (PREDICTED: nodulin homeobox isoform X2 [Cucumis melo] >XP_016902119.1 PREDICTED: nodulin homeobox isoform X2 [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1   TNFTRERNGIKQIDIVNSSKTKENAKETEQAGSLEEEKLENVHSE 46
           TN TR RN IKQ DIV+SSK+ ENAKETEQAGSLEEEK+ENVHSE
Sbjct: 653 TNSTRGRNDIKQTDIVDSSKSNENAKETEQAGSLEEEKIENVHSE 697

[Close]

BLAST of MELO3C034787.2 vs. NCBI nr
Match: XP_022949177.1 (nodulin homeobox [Cucurbita moschata])

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-05
Identity = 31/45 (68.89%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 1   TNFTRERNGIKQIDIVNSSKTKENAKETEQAGSLEEEKLENVHSE 46
           TN  R RN I+ +DIV+SSK+ ENAKE EQ+G+LEEEK+ENVHSE
Sbjct: 657 TNSARGRNSIQPMDIVDSSKSNENAKEIEQSGNLEEEKVENVHSE 701

[Close]

BLAST of MELO3C034787.2 vs. TrEMBL
Match: tr|A0A0A0LVA2|A0A0A0LVA2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G502860 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.2e-09
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1   TNFTRERNGIKQIDIVNSSKTKENAKETEQAGSLEEEKLENVHSE 46
           TN  R RNGIKQ DIV+SSK+ ENAKETEQAGSLEEEK+ENVHSE
Sbjct: 653 TNSARGRNGIKQTDIVDSSKSNENAKETEQAGSLEEEKVENVHSE 697

[Close]

BLAST of MELO3C034787.2 vs. TrEMBL
Match: tr|A0A1S4E1L6|A0A1S4E1L6_CUCME (nodulin homeobox isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497176 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.4e-09
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1   TNFTRERNGIKQIDIVNSSKTKENAKETEQAGSLEEEKLENVHSE 46
           TN TR RN IKQ DIV+SSK+ ENAKETEQAGSLEEEK+ENVHSE
Sbjct: 653 TNSTRGRNDIKQTDIVDSSKSNENAKETEQAGSLEEEKIENVHSE 697

[Close]

BLAST of MELO3C034787.2 vs. TrEMBL
Match: tr|A0A1S3C587|A0A1S3C587_CUCME (nodulin homeobox isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497176 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.4e-09
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1   TNFTRERNGIKQIDIVNSSKTKENAKETEQAGSLEEEKLENVHSE 46
           TN TR RN IKQ DIV+SSK+ ENAKETEQAGSLEEEK+ENVHSE
Sbjct: 660 TNSTRGRNDIKQTDIVDSSKSNENAKETEQAGSLEEEKIENVHSE 704

The following BLAST results are available for this feature:

BLAST of MELO3C034787.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658036.1	1.1e-08	82.22	PREDICTED: uncharacterized protein LOC101207456 isoform X2 [Cucumis sativus] >XP...	[more]
XP_011658033.1	1.1e-08	82.22	PREDICTED: uncharacterized protein LOC101207456 isoform X1 [Cucumis sativus]	[more]
XP_008457500.1	1.4e-08	82.22	PREDICTED: nodulin homeobox isoform X1 [Cucumis melo]	[more]
XP_008457501.1	1.4e-08	82.22	PREDICTED: nodulin homeobox isoform X2 [Cucumis melo] >XP_016902119.1 PREDICTED:...	[more]
XP_022949177.1	1.1e-05	68.89	nodulin homeobox [Cucurbita moschata]	[more]

BLAST of MELO3C034787.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C034787.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C034787.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LVA2\|A0A0A0LVA2_CUCSA	7.2e-09	82.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G502860 PE=4 SV=1	[more]
tr\|A0A1S4E1L6\|A0A1S4E1L6_CUCME	9.4e-09	82.22	nodulin homeobox isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497176 PE=4 SV=1	[more]
tr\|A0A1S3C587\|A0A1S3C587_CUCME	9.4e-09	82.22	nodulin homeobox isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497176 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034787.2.1	MELO3C034787.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..45

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C034787.2	Cucumber (Gy14) v2	cgybmedB393
MELO3C034787.2	Cucumber (Gy14) v1	cgymedB624
MELO3C034787.2	Cucurbita maxima (Rimu)	cmamedB585
MELO3C034787.2	Cucurbita maxima (Rimu)	cmamedB619
MELO3C034787.2	Cucurbita moschata (Rifu)	cmomedB572
MELO3C034787.2	Cucurbita moschata (Rifu)	cmomedB608
MELO3C034787.2	Cucurbita pepo (Zucchini)	cpemedB297
MELO3C034787.2	Cucurbita pepo (Zucchini)	cpemedB803
MELO3C034787.2	Wild cucumber (PI 183967)	cpimedB429
MELO3C034787.2	Cucumber (Chinese Long) v2	cumedB432
MELO3C034787.2	Bottle gourd (USVL1VR-Ls)	lsimedB051
MELO3C034787.2	Watermelon (Charleston Gray)	medwcgB107
MELO3C034787.2	Watermelon (97103) v1	medwmB126
MELO3C034787.2	Silver-seed gourd	carmedB0031
MELO3C034787.2	Silver-seed gourd	carmedB0424
MELO3C034787.2	Cucumber (Chinese Long) v3	cucmedB448
MELO3C034787.2	Watermelon (97103) v2	medwmbB107
MELO3C034787.2	Wax gourd	medwgoB123
MELO3C034787.2	Wild cucumber (PI 183967)	cpimedB441