MELO3C034784.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C034784.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like
Location	chr11 : 6074550 .. 6074906 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGATCGTCCCTAGAGCAGAGAAGCCTATTTTCCCACAAGTCGTTCGCTTCAGCCAGACGATAAGCGTGTGCGTGCGAAAGACATTTTTCGTCCGCTGTCTTAAGTGGGCGGACGTTGGGACAGAATACATTGAGGTCGTCAAGAGCCAATCAATGTGTTATGTTTGTAATGTGTAGCAATTGTTTGTGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTGAGCATCAGATGCTCACGACCTTTAAAGAGTTTCGGACCGACAGTCACAGACATTTCAAAAAGTACATTGACCCGGGGGAGGCTTGTGCCAACCCACCAAACGCATTGGTTGGACGTCATGAGGATTGA

mRNA sequence

ATGACGATCGTCCCTAGAGCAGAGAAGCCTATTTTCCCACAAGTCGTTCGCTTCAGCCAGACGATAAGCGTGTGCGTGCGAAAGACATTTTTCGTCCGCTGTCTTAAGTGGGCGGACGTTGGGACAGAATACATTGAGGTCGTCAAGAGCCAATCAATGTGTTATCAATTGTTTGTGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTGAGCATCAGATGCTCACGACCTTTAAAGAGTTTCGGACCGACAGTCACAGACATTTCAAAAAGTACATTGACCCGGGGGAGGCTTGTGCCAACCCACCAAACGCATTGGTTGGACGTCATGAGGATTGA

Coding sequence (CDS)

ATGACGATCGTCCCTAGAGCAGAGAAGCCTATTTTCCCACAAGTCGTTCGCTTCAGCCAGACGATAAGCGTGTGCGTGCGAAAGACATTTTTCGTCCGCTGTCTTAAGTGGGCGGACGTTGGGACAGAATACATTGAGGTCGTCAAGAGCCAATCAATGTGTTATCAATTGTTTGTGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTGAGCATCAGATGCTCACGACCTTTAAAGAGTTTCGGACCGACAGTCACAGACATTTCAAAAAGTACATTGACCCGGGGGAGGCTTGTGCCAACCCACCAAACGCATTGGTTGGACGTCATGAGGATTGA

Protein sequence

MTIVPRAEKPIFPQVVRFSQTISVCVRKTFFVRCLKWADVGTEYIEVVKSQSMCYQLFVLDFNDQAMNRFVEHQMLTTFKEFRTDSHRHFKKYIDPGEACANPPNALVGRHED

Homology

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BLAST of MELO3C034784.2 vs. NCBI nr
Match: ADN34071.1 (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 171.8 bits (434), Expect = 1.3e-39
Identity = 86/113 (76.11%), Postives = 89/113 (78.76%), Query Frame = 0


Query: 1   MTIVPRAEKPIFPQVVRFSQTISVCVRKTFFVRCLKWADVGTEYIEVVKSQSMCYQLFVL 60
           MTI P AEKPI P  V FSQ I VCVRKTF VRCLKW DVG EYIEVVK      + FVL
Sbjct: 62  MTIAPGAEKPISPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGD--LQRFFVL 121

Query: 61  DFNDQAMNRFVEHQMLTTFKEFRTDSHRHFKKYIDPGEACANPPNALVGRHED 114
           DFNDQAMNRFVEHQM+TTFKEF+ D HRHFKKY DP EA ANPPNALVGR ED
Sbjct: 122 DFNDQAMNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDED 172

[Close]

BLAST of MELO3C034784.2 vs. NCBI nr
Match: XP_016901035.1 (PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 5.5e-33
Identity = 78/113 (69.03%), Postives = 83/113 (73.45%), Query Frame = 0


Query: 1   MTIVPRAEKPIFPQVVRFSQTISVCVRKTFFVRCLKWADVGTEYIEVVKSQSMCYQLFVL 60
           M I P AE PIFP  +RFSQ I VCV+KTFFV  LKWAD+  EYIEVVK      + FVL
Sbjct: 71  MMIAPGAEMPIFPYAIRFSQAIGVCVQKTFFVCYLKWADIDREYIEVVKGN--LQRFFVL 130

Query: 61  DFNDQAMNRFVEHQMLTTFKEFRTDSHRHFKKYIDPGEACANPPNALVGRHED 114
           DFNDQA+NRFVEHQMLTTFKEF  D HRHFK      EA ANPPN LVGRHED
Sbjct: 131 DFNDQAINRFVEHQMLTTFKEFWGDCHRHFK------EARANPPNVLVGRHED 175

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BLAST of MELO3C034784.2 vs. NCBI nr
Match: XP_016901155.1 (PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 1.6e-16
Identity = 49/73 (67.12%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 41  GTEYIEVVKSQSMCYQLFVLDFNDQAMNRFVEHQMLTTFKEFRTDSHRHFKKYIDPGEAC 100
           G EYIEVVK+     Q FVLDF+DQAMN  VE+QM  TFKEF  D H+ FKKY DP EA 
Sbjct: 116 GREYIEVVKAD---LQFFVLDFSDQAMNTSVEYQMSNTFKEFWGDCHKQFKKYSDPEEAR 175

Query: 101 ANPPNALVGRHED 114
           ANPPN LVGR+ED
Sbjct: 176 ANPPNLLVGRNED 185

[Close]

BLAST of MELO3C034784.2 vs. NCBI nr
Match: XP_011648549.1 (PREDICTED: (R)-mandelonitrile lyase 1-like [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 8.5e-10
Identity = 40/75 (53.33%), Postives = 47/75 (62.67%), Query Frame = 0


Query: 1   MTIVPRAEKPIFPQVVRFSQTISVCVRKTFFVRCLKWADVGTEYIEVVKSQSMCYQLFVL 60
           ++I    +KPI P  +RFS TI V  R TF ++ LKW DV  EYIEVVK      Q FVL
Sbjct: 751 ISIPLEGDKPISPHPIRFSCTIDVLTRDTFPIQILKWVDVPQEYIEVVK------QWFVL 810

Query: 61  DFNDQAMNRFVEHQM 76
           DF D  + RFVEHQM
Sbjct: 811 DFKDLTLTRFVEHQM 819

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BLAST of MELO3C034784.2 vs. NCBI nr
Match: XP_016903164.1 (PREDICTED: uncharacterized protein LOC107992057 [Cucumis melo])

HSP 1 Score: 57.0 bits (136), Expect = 4.8e-05
Identity = 29/48 (60.42%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 3   IVPRAEKPIFPQVVRFSQTISVCVRKTFFVRCLKWADVGTEYIEVVKS 51
           IVP  +K I P VV FS TI V    TF VR LKWAD+ TEYIE++KS
Sbjct: 323 IVPGQDKRISPYVVHFSNTIGVLTGDTFLVRFLKWADMITEYIELIKS 370

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BLAST of MELO3C034784.2 vs. TrEMBL
Match: tr|E5GC72|E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 8.9e-40
Identity = 86/113 (76.11%), Postives = 89/113 (78.76%), Query Frame = 0


Query: 1   MTIVPRAEKPIFPQVVRFSQTISVCVRKTFFVRCLKWADVGTEYIEVVKSQSMCYQLFVL 60
           MTI P AEKPI P  V FSQ I VCVRKTF VRCLKW DVG EYIEVVK      + FVL
Sbjct: 62  MTIAPGAEKPISPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGD--LQRFFVL 121

Query: 61  DFNDQAMNRFVEHQMLTTFKEFRTDSHRHFKKYIDPGEACANPPNALVGRHED 114
           DFNDQAMNRFVEHQM+TTFKEF+ D HRHFKKY DP EA ANPPNALVGR ED
Sbjct: 122 DFNDQAMNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDED 172

[Close]

BLAST of MELO3C034784.2 vs. TrEMBL
Match: tr|A0A1S4DZ93|A0A1S4DZ93_CUCME (uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.6e-33
Identity = 78/113 (69.03%), Postives = 83/113 (73.45%), Query Frame = 0


Query: 1   MTIVPRAEKPIFPQVVRFSQTISVCVRKTFFVRCLKWADVGTEYIEVVKSQSMCYQLFVL 60
           M I P AE PIFP  +RFSQ I VCV+KTFFV  LKWAD+  EYIEVVK      + FVL
Sbjct: 71  MMIAPGAEMPIFPYAIRFSQAIGVCVQKTFFVCYLKWADIDREYIEVVKGN--LQRFFVL 130

Query: 61  DFNDQAMNRFVEHQMLTTFKEFRTDSHRHFKKYIDPGEACANPPNALVGRHED 114
           DFNDQA+NRFVEHQMLTTFKEF  D HRHFK      EA ANPPN LVGRHED
Sbjct: 131 DFNDQAINRFVEHQMLTTFKEFWGDCHRHFK------EARANPPNVLVGRHED 175

[Close]

BLAST of MELO3C034784.2 vs. TrEMBL
Match: tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME (LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103493054 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 49/73 (67.12%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 41  GTEYIEVVKSQSMCYQLFVLDFNDQAMNRFVEHQMLTTFKEFRTDSHRHFKKYIDPGEAC 100
           G EYIEVVK+     Q FVLDF+DQAMN  VE+QM  TFKEF  D H+ FKKY DP EA 
Sbjct: 116 GREYIEVVKAD---LQFFVLDFSDQAMNTSVEYQMSNTFKEFWGDCHKQFKKYSDPEEAR 175

Query: 101 ANPPNALVGRHED 114
           ANPPN LVGR+ED
Sbjct: 176 ANPPNLLVGRNED 185

[Close]

BLAST of MELO3C034784.2 vs. TrEMBL
Match: tr|A0A1S4E4L2|A0A1S4E4L2_CUCME (uncharacterized protein LOC107992057 OS=Cucumis melo OX=3656 GN=LOC107992057 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.2e-05
Identity = 29/48 (60.42%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 3   IVPRAEKPIFPQVVRFSQTISVCVRKTFFVRCLKWADVGTEYIEVVKS 51
           IVP  +K I P VV FS TI V    TF VR LKWAD+ TEYIE++KS
Sbjct: 323 IVPGQDKRISPYVVHFSNTIGVLTGDTFLVRFLKWADMITEYIELIKS 370

The following BLAST results are available for this feature:

BLAST of MELO3C034784.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34071.1	1.3e-39	76.11	CACTA en-spm transposon protein [Cucumis melo subsp. melo]	[more]
XP_016901035.1	5.5e-33	69.03	PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 P...	[more]
XP_016901155.1	1.6e-16	67.12	PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochond...	[more]
XP_011648549.1	8.5e-10	53.33	PREDICTED: (R)-mandelonitrile lyase 1-like [Cucumis sativus]	[more]
XP_016903164.1	4.8e-05	60.42	PREDICTED: uncharacterized protein LOC107992057 [Cucumis melo]	[more]

BLAST of MELO3C034784.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C034784.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C034784.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GC72\|E5GC72_CUCME	8.9e-40	76.11	CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A1S4DZ93\|A0A1S4DZ93_CUCME	3.6e-33	69.03	uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=...	[more]
tr\|A0A1S4DZJ7\|A0A1S4DZJ7_CUCME	1.1e-16	67.12	LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like O...	[more]
tr\|A0A1S4E4L2\|A0A1S4E4L2_CUCME	3.2e-05	60.42	uncharacterized protein LOC107992057 OS=Cucumis melo OX=3656 GN=LOC107992057 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0008483	transaminase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034784.2.1	MELO3C034784.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C034784.2	Wax gourd	medwgoB124
MELO3C034784.2	Cucumber (Gy14) v2	cgybmedB076
MELO3C034784.2	Cucumber (Gy14) v1	cgymedB526
MELO3C034784.2	Cucurbita maxima (Rimu)	cmamedB582
MELO3C034784.2	Cucurbita maxima (Rimu)	cmamedB614
MELO3C034784.2	Cucurbita moschata (Rifu)	cmomedB570
MELO3C034784.2	Cucurbita moschata (Rifu)	cmomedB604
MELO3C034784.2	Cucurbita pepo (Zucchini)	cpemedB295
MELO3C034784.2	Cucurbita pepo (Zucchini)	cpemedB796
MELO3C034784.2	Wild cucumber (PI 183967)	cpimedB084
MELO3C034784.2	Cucumber (Chinese Long) v2	cumedB084
MELO3C034784.2	Bottle gourd (USVL1VR-Ls)	lsimedB049
MELO3C034784.2	Watermelon (Charleston Gray)	medwcgB072
MELO3C034784.2	Watermelon (97103) v1	medwmB082
MELO3C034784.2	Silver-seed gourd	carmedB1033
MELO3C034784.2	Silver-seed gourd	carmedB1035
MELO3C034784.2	Cucumber (Chinese Long) v3	cucmedB091
MELO3C034784.2	Watermelon (97103) v2	medwmbB119