MELO3C034667.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C034667.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	PHD finger alfin-like protein
Location	chr11 : 9096989 .. 9097168 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGGAACATGCGCAAGGCAGTCGCATACAAGGGAAGAGGTAGAGACATACGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTAGGGCATGCGGTGAGAACTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTATGAGAAATGGTTCCATGGGAAGTTTGTTGTATGA

mRNA sequence

ATGCAAGGAACATGCGCAAGGCAGTCGCATACAAGGGAAGAGGTAGAGACATACGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTAGGGCATGCGGTGAGAACTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTATGAGAAATGGTTCCATGGGAAGTTTGTTGTATGA

Coding sequence (CDS)

ATGCAAGGAACATGCGCAAGGCAGTCGCATACAAGGGAAGAGGTAGAGACATACGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTAGGGCATGCGGTGAGAACTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTATGAGAAATGGTTCCATGGGAAGTTTGTTGTATGA

Protein sequence

MQGTCARQSHTREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFVV

Homology

[Close]

BLAST of MELO3C034667.2 vs. NCBI nr
Match: XP_016903323.1 (PREDICTED: PHD finger protein ALFIN-LIKE 3-like [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 8.3e-25
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1  MQGTCARQSHTREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFVV 60
          MQGTCARQS  R+EVETYEED+DEH D LCRACGENYASDEFWICCDIYEKWFHGKFVV
Sbjct: 39 MQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV 97

[Close]

BLAST of MELO3C034667.2 vs. NCBI nr
Match: XP_004141692.1 (PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis sativus] >KGN45504.1 hypothetical protein Csa_7G450620 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 2.1e-20
Identity = 51/59 (86.44%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 1   MQGTCARQSHTREEVET-YEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFV 59
           MQG  ARQS  REEVET YEEDEDEHGDTLC ACGENYASDEFWICCDI EKWFHGK V
Sbjct: 168 MQGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCV 226

[Close]

BLAST of MELO3C034667.2 vs. NCBI nr
Match: XP_008462330.1 (PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis melo])

HSP 1 Score: 105.1 bits (261), Expect = 8.1e-20
Identity = 50/58 (86.21%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 2   QGTCARQSHTREEVET-YEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFV 59
           QG  ARQS  REEVET YEEDEDEHGDTLC ACGENYASDEFWICCDI EKWFHGK V
Sbjct: 172 QGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCV 229

[Close]

BLAST of MELO3C034667.2 vs. NCBI nr
Match: XP_008462331.1 (PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo])

HSP 1 Score: 105.1 bits (261), Expect = 8.1e-20
Identity = 50/58 (86.21%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 2   QGTCARQSHTREEVET-YEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFV 59
           QG  ARQS  REEVET YEEDEDEHGDTLC ACGENYASDEFWICCDI EKWFHGK V
Sbjct: 169 QGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCV 226

[Close]

BLAST of MELO3C034667.2 vs. NCBI nr
Match: XP_022992372.1 (PHD finger protein ALFIN-LIKE 3-like [Cucurbita maxima])

HSP 1 Score: 101.7 bits (252), Expect = 8.9e-19
Identity = 48/59 (81.36%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 1   MQGTCARQSHTREEVET-YEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFV 59
           MQG   RQ   REEVET YEEDEDEHGDTLC ACGENYA+DEFWICCDI EKWFHGK V
Sbjct: 168 MQGVYVRQPLAREEVETLYEEDEDEHGDTLCGACGENYATDEFWICCDICEKWFHGKCV 226

[Close]

BLAST of MELO3C034667.2 vs. TAIR10
Match: AT5G05610.1 (alfin-like 1)

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-15
Identity = 29/43 (67.44%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 16  ETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFV 59
           E+YE+++DEHGDTLC +CG NY +DEFWICCD+ E+W+HGK V
Sbjct: 174 ESYEDEDDEHGDTLCGSCGGNYTNDEFWICCDVCERWYHGKCV 216

[Close]

BLAST of MELO3C034667.2 vs. TAIR10
Match: AT5G20510.1 (alfin-like 5)

HSP 1 Score: 68.2 bits (165), Expect = 2.0e-12
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 26  GDTLCRACGENYASDEFWICCDIYEKWFHGKFV 59
           G+TLC ACG+NYASDEFWICCD+ EKWFHG+ V
Sbjct: 203 GETLCGACGDNYASDEFWICCDMCEKWFHGECV 235

[Close]

BLAST of MELO3C034667.2 vs. TAIR10
Match: AT3G11200.1 (alfin-like 2)

HSP 1 Score: 60.8 bits (146), Expect = 3.2e-10
Identity = 21/33 (63.64%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 26  GDTLCRACGENYASDEFWICCDIYEKWFHGKFV 59
           GDTLC +CG +Y ++EFWICCD+ E+W+HGK V
Sbjct: 189 GDTLCGSCGGHYTNEEFWICCDVCERWYHGKCV 221

[Close]

BLAST of MELO3C034667.2 vs. TAIR10
Match: AT5G26210.1 (alfin-like 4)

HSP 1 Score: 60.5 bits (145), Expect = 4.1e-10
Identity = 23/31 (74.19%), Postives = 26/31 (83.87%), Query Frame = 0


Query: 28  TLCRACGENYASDEFWICCDIYEKWFHGKFV 59
           T C ACGE+YA+DEFWICCD+ E WFHGK V
Sbjct: 200 TQCGACGESYAADEFWICCDLCEMWFHGKCV 230

[Close]

BLAST of MELO3C034667.2 vs. TAIR10
Match: AT2G02470.1 (alfin-like 6)

HSP 1 Score: 60.1 bits (144), Expect = 5.4e-10
Identity = 22/30 (73.33%), Postives = 25/30 (83.33%), Query Frame = 0


Query: 29  LCRACGENYASDEFWICCDIYEKWFHGKFV 59
           +C ACG+NY +DEFWICCD  EKWFHGK V
Sbjct: 202 VCGACGDNYGTDEFWICCDACEKWFHGKCV 231

[Close]

BLAST of MELO3C034667.2 vs. Swiss-Prot
Match: sp|Q9FFF5|ALFL1_ARATH (PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=AL1 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.6e-14
Identity = 29/43 (67.44%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 16  ETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFV 59
           E+YE+++DEHGDTLC +CG NY +DEFWICCD+ E+W+HGK V
Sbjct: 174 ESYEDEDDEHGDTLCGSCGGNYTNDEFWICCDVCERWYHGKCV 216

[Close]

BLAST of MELO3C034667.2 vs. Swiss-Prot
Match: sp|Q5XEM9|ALFL5_ARATH (PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=AL5 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.6e-11
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 26  GDTLCRACGENYASDEFWICCDIYEKWFHGKFV 59
           G+TLC ACG+NYASDEFWICCD+ EKWFHG+ V
Sbjct: 203 GETLCGACGDNYASDEFWICCDMCEKWFHGECV 235

[Close]

BLAST of MELO3C034667.2 vs. Swiss-Prot
Match: sp|B8B8C5|ALFL9_ORYSI (PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_26819 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.1e-11
Identity = 26/33 (78.79%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 26  GDTLCRACGENYASDEFWICCDIYEKWFHGKFV 59
           G+TLC ACGE+Y +DEFWICCDI EKWFHGK V
Sbjct: 207 GETLCGACGESYGADEFWICCDICEKWFHGKCV 239

[Close]

BLAST of MELO3C034667.2 vs. Swiss-Prot
Match: sp|Q6YTY3|ALFL9_ORYSJ (PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0608400 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.1e-11
Identity = 26/33 (78.79%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 26  GDTLCRACGENYASDEFWICCDIYEKWFHGKFV 59
           G+TLC ACGE+Y +DEFWICCDI EKWFHGK V
Sbjct: 208 GETLCGACGESYGADEFWICCDICEKWFHGKCV 240

[Close]

BLAST of MELO3C034667.2 vs. Swiss-Prot
Match: sp|A2Y0Q2|ALFL1_ORYSI (PHD finger protein ALFIN-LIKE 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18576 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-10
Identity = 26/51 (50.98%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 8   QSHTREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFV 59
           +++ +EE E Y+ED+ +H +TLC  CG  Y++DEFWI CD+ E+W+HGK V
Sbjct: 183 ENNIKEEDEGYDEDDGDHSETLCGTCGGIYSADEFWIGCDVCERWYHGKCV 233

[Close]

BLAST of MELO3C034667.2 vs. TrEMBL
Match: tr|A0A1S4E514|A0A1S4E514_CUCME (PHD finger protein ALFIN-LIKE 3-like OS=Cucumis melo OX=3656 GN=LOC107992128 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.5e-25
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1  MQGTCARQSHTREEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFVV 60
          MQGTCARQS  R+EVETYEED+DEH D LCRACGENYASDEFWICCDIYEKWFHGKFVV
Sbjct: 39 MQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV 97

[Close]

BLAST of MELO3C034667.2 vs. TrEMBL
Match: tr|A0A0A0K9L1|A0A0A0K9L1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450620 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-20
Identity = 51/59 (86.44%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 1   MQGTCARQSHTREEVET-YEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFV 59
           MQG  ARQS  REEVET YEEDEDEHGDTLC ACGENYASDEFWICCDI EKWFHGK V
Sbjct: 168 MQGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCV 226

[Close]

BLAST of MELO3C034667.2 vs. TrEMBL
Match: tr|A0A1S3CI87|A0A1S3CI87_CUCME (PHD finger protein ALFIN-LIKE 3-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500707 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.3e-20
Identity = 50/58 (86.21%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 2   QGTCARQSHTREEVET-YEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFV 59
           QG  ARQS  REEVET YEEDEDEHGDTLC ACGENYASDEFWICCDI EKWFHGK V
Sbjct: 172 QGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCV 229

[Close]

BLAST of MELO3C034667.2 vs. TrEMBL
Match: tr|A0A1S3CGR0|A0A1S3CGR0_CUCME (PHD finger protein ALFIN-LIKE 3-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500707 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.3e-20
Identity = 50/58 (86.21%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 2   QGTCARQSHTREEVET-YEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFV 59
           QG  ARQS  REEVET YEEDEDEHGDTLC ACGENYASDEFWICCDI EKWFHGK V
Sbjct: 169 QGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCV 226

[Close]

BLAST of MELO3C034667.2 vs. TrEMBL
Match: tr|A0A2P6Q1H7|A0A2P6Q1H7_ROSCH (Putative chromatin regulator PHD family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0311511 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.0e-15
Identity = 41/59 (69.49%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 2   QGTCARQSHTREEVE--TYEEDEDEHGDTLCRACGENYASDEFWICCDIYEKWFHGKFV 59
           QG  A+    RE+ E  T +EDEDEHG+TLC ACGENYASDEFWICCD+ EKWFHGK V
Sbjct: 170 QGKYAKVMQAREDYEDGTEDEDEDEHGETLCGACGENYASDEFWICCDVCEKWFHGKCV 228

The following BLAST results are available for this feature:

BLAST of MELO3C034667.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016903323.1	8.3e-25	89.83	PREDICTED: PHD finger protein ALFIN-LIKE 3-like [Cucumis melo]	[more]
XP_004141692.1	2.1e-20	86.44	PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis sativus] >KG...	[more]
XP_008462330.1	8.1e-20	86.21	PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis melo]	[more]
XP_008462331.1	8.1e-20	86.21	PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo]	[more]
XP_022992372.1	8.9e-19	81.36	PHD finger protein ALFIN-LIKE 3-like [Cucurbita maxima]	[more]

BLAST of MELO3C034667.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G05610.1	1.5e-15	67.44	alfin-like 1	[more]
AT5G20510.1	2.0e-12	78.79	alfin-like 5	[more]
AT3G11200.1	3.2e-10	63.64	alfin-like 2	[more]
AT5G26210.1	4.1e-10	74.19	alfin-like 4	[more]
AT2G02470.1	5.4e-10	73.33	alfin-like 6	[more]

BLAST of MELO3C034667.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FFF5\|ALFL1_ARATH	2.6e-14	67.44	PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=AL1 PE=1 SV=1	[more]
sp\|Q5XEM9\|ALFL5_ARATH	3.6e-11	78.79	PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=AL5 PE=2 SV=1	[more]
sp\|B8B8C5\|ALFL9_ORYSI	6.1e-11	78.79	PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_26...	[more]
sp\|Q6YTY3\|ALFL9_ORYSJ	6.1e-11	78.79	PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07...	[more]
sp\|A2Y0Q2\|ALFL1_ORYSI	1.0e-10	50.98	PHD finger protein ALFIN-LIKE 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18...	[more]

BLAST of MELO3C034667.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E514\|A0A1S4E514_CUCME	5.5e-25	89.83	PHD finger protein ALFIN-LIKE 3-like OS=Cucumis melo OX=3656 GN=LOC107992128 PE=...	[more]
tr\|A0A0A0K9L1\|A0A0A0K9L1_CUCSA	1.4e-20	86.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450620 PE=4 SV=1	[more]
tr\|A0A1S3CI87\|A0A1S3CI87_CUCME	5.3e-20	86.21	PHD finger protein ALFIN-LIKE 3-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3CGR0\|A0A1S3CGR0_CUCME	5.3e-20	86.21	PHD finger protein ALFIN-LIKE 3-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2P6Q1H7\|A0A2P6Q1H7_ROSCH	3.0e-15	69.49	Putative chromatin regulator PHD family OS=Rosa chinensis OX=74649 GN=RchiOBHm_C...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011011	Znf_FYVE_PHD
IPR013083	Znf_RING/FYVE/PHD

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0042393	histone binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034667.2.1	MELO3C034667.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 22..59 e-value: 3.5E-11 score: 44.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR12321	CPG BINDING PROTEIN	coord: 7..58
None	No IPR available	PANTHER	PTHR12321:SF98	PHD FINGER PROTEIN ALFIN-LIKE 3-RELATED	coord: 7..58
IPR011011	Zinc finger, FYVE/PHD-type	SUPERFAMILY	SSF57903	FYVE/PHD zinc finger	coord: 18..56

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C034667.2	Watermelon (97103) v2	medwmbB087
MELO3C034667.2	Wax gourd	medwgoB125
MELO3C034667.2	Wax gourd	medwgoB128
MELO3C034667.2	Cucumber (Gy14) v2	cgybmedB080
MELO3C034667.2	Cucumber (Gy14) v1	cgymedB071
MELO3C034667.2	Cucurbita maxima (Rimu)	cmamedB573
MELO3C034667.2	Cucurbita maxima (Rimu)	cmamedB616
MELO3C034667.2	Cucurbita moschata (Rifu)	cmomedB561
MELO3C034667.2	Cucurbita moschata (Rifu)	cmomedB605
MELO3C034667.2	Cucurbita pepo (Zucchini)	cpemedB306
MELO3C034667.2	Cucurbita pepo (Zucchini)	cpemedB807
MELO3C034667.2	Wild cucumber (PI 183967)	cpimedB088
MELO3C034667.2	Cucumber (Chinese Long) v2	cumedB088
MELO3C034667.2	Bottle gourd (USVL1VR-Ls)	lsimedB054
MELO3C034667.2	Watermelon (Charleston Gray)	medwcgB088
MELO3C034667.2	Watermelon (97103) v1	medwmB120
MELO3C034667.2	Silver-seed gourd	carmedB0420
MELO3C034667.2	Cucumber (Chinese Long) v3	cucmedB096