MELO3C034656.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C034656.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	ATP-dependent Clp protease ATP-binding subunit
Location	chr11 : 8377215 .. 8377431 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTATAACCTTGGATATGGGCCTTCTTGTAACTGGCACAAAATATCGTGGGGAGTTTGAAGAAAGATTAAAGAAACTGATGGAGGAAATAAAATTAAAGTGATGAAATAATTCTATTTATTGATGAGGTGCATACATTAATTGGAGCAGGGGCTGCAGAAGGAGCTATTGATGCAGCAAACATATTAAAACCTGCCCTTGCAAGGGGTGAACTGCAG

mRNA sequence

GTTATAACCTTGGATATGGGCCTTCTTGTAACTGGCACAAAATATCGTGGGGAGTTTGAAGAAAGATTAAAGAAACTGATGGAGGAAATAAAATTAAAGTGATGAAATAATTCTATTTATTGATGAGGTGCATACATTAATTGGAGCAGGGGCTGCAGAAGGAGCTATTGATGCAGCAAACATATTAAAACCTGCCCTTGCAAGGGGTGAACTGCAG

Coding sequence (CDS)

ATGGGCCTTCTTGTAACTGGCACAAAATATCGTGGGGAGTTTGAAGAAAGATTAAAGAAACTGATGGAGGAAATAAAATTAAAGTGA

Protein sequence

MGLLVTGTKYRGEFEERLKKLMEEIKLK

Homology

[Close]

BLAST of MELO3C034656.2 vs. NCBI nr
Match: AAD02267.1 (ClpC protease (chloroplast) [Spinacia oleracea])

HSP 1 Score: 50.8 bits (120), Expect = 8.6e-04
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1   MGLLVTGTKYRGEFEERLKKLMEEIK 27
           MGLLV GTKYRGEFEERLKKLMEEIK
Sbjct: 335 MGLLVAGTKYRGEFEERLKKLMEEIK 360

[Close]

BLAST of MELO3C034656.2 vs. NCBI nr
Match: XP_015620084.1 (chaperone protein ClpC2, chloroplastic [Oryza sativa Japonica Group] >XP_015620085.1 chaperone protein ClpC2, chloroplastic [Oryza sativa Japonica Group] >Q2QVG9.2 RecName: Full=Chaperone protein ClpC2, chloroplastic; AltName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC homolog 2; AltName: Full=Casein lytic proteinase C2; Flags: Precursor >ABA96309.2 ATP-dependent Clp protease ATP-binding subunit clpA CD4B,chloroplast precursor, putative, expressed [Oryza sativa Japonica Group] >ABG21929.1 ATP-dependent Clp protease ATP-binding subunit clpA CD4B,chloroplast precursor, putative, expressed [Oryza sativa Japonica Group] >BAF29461.1 Os12g0230100 [Oryza sativa Japonica Group] >BAT16428.1 Os12g0230100 [Oryza sativa Japonica Group])

HSP 1 Score: 50.8 bits (120), Expect = 8.6e-04
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1   MGLLVTGTKYRGEFEERLKKLMEEIK 27
           MGLLV GTKYRGEFEERLKKLMEEIK
Sbjct: 333 MGLLVAGTKYRGEFEERLKKLMEEIK 358

[Close]

BLAST of MELO3C034656.2 vs. NCBI nr
Match: EAZ30583.1 (hypothetical protein OsJ_14634 [Oryza sativa Japonica Group])

HSP 1 Score: 50.8 bits (120), Expect = 8.6e-04
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1   MGLLVTGTKYRGEFEERLKKLMEEIK 27
           MGLLV GTKYRGEFEERLKKLMEEIK
Sbjct: 447 MGLLVAGTKYRGEFEERLKKLMEEIK 472

[Close]

BLAST of MELO3C034656.2 vs. NCBI nr
Match: ABK95905.1 (unknown [Populus trichocarpa])

HSP 1 Score: 50.8 bits (120), Expect = 8.6e-04
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1   MGLLVTGTKYRGEFEERLKKLMEEIK 27
           MGLLV GTKYRGEFEERLKKLMEEIK
Sbjct: 247 MGLLVAGTKYRGEFEERLKKLMEEIK 272

[Close]

BLAST of MELO3C034656.2 vs. NCBI nr
Match: XP_002447724.1 (chaperone protein ClpC1, chloroplastic [Sorghum bicolor] >EES12052.1 hypothetical protein SORBI_3006G058100 [Sorghum bicolor])

HSP 1 Score: 50.8 bits (120), Expect = 8.6e-04
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1   MGLLVTGTKYRGEFEERLKKLMEEIK 27
           MGLLV GTKYRGEFEERLKKLMEEIK
Sbjct: 335 MGLLVAGTKYRGEFEERLKKLMEEIK 360

[Close]

BLAST of MELO3C034656.2 vs. TAIR10
Match: AT3G48870.1 (Clp ATPase)

HSP 1 Score: 49.7 bits (117), Expect = 3.5e-07
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1   MGLLVTGTKYRGEFEERLKKLMEEIK 27
           MGLLV GTKYRGEFEERLKKLMEEI+
Sbjct: 359 MGLLVAGTKYRGEFEERLKKLMEEIR 384

[Close]

BLAST of MELO3C034656.2 vs. TAIR10
Match: AT5G50920.1 (CLPC homologue 1)

HSP 1 Score: 49.7 bits (117), Expect = 3.5e-07
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1   MGLLVTGTKYRGEFEERLKKLMEEIK 27
           MGLLV GTKYRGEFEERLKKLMEEI+
Sbjct: 338 MGLLVAGTKYRGEFEERLKKLMEEIR 363

[Close]

BLAST of MELO3C034656.2 vs. TAIR10
Match: AT1G74310.1 (heat shock protein 101)

HSP 1 Score: 39.3 bits (90), Expect = 4.7e-04
Identity = 17/26 (65.38%), Postives = 22/26 (84.62%), Query Frame = 0


Query: 1   MGLLVTGTKYRGEFEERLKKLMEEIK 27
           MG LV G KYRGEFEERLK +++E++
Sbjct: 243 MGALVAGAKYRGEFEERLKSVLKEVE 268

[Close]

BLAST of MELO3C034656.2 vs. Swiss-Prot
Match: sp|P31541|CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4A, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CD4A PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.8e-06
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1   MGLLVTGTKYRGEFEERLKKLMEEIK 27
           MGLLV GTKYRGEFEERLKKLMEEIK
Sbjct: 338 MGLLVAGTKYRGEFEERLKKLMEEIK 363

[Close]

BLAST of MELO3C034656.2 vs. Swiss-Prot
Match: sp|P31542|CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CD4B PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.8e-06
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1   MGLLVTGTKYRGEFEERLKKLMEEIK 27
           MGLLV GTKYRGEFEERLKKLMEEIK
Sbjct: 336 MGLLVAGTKYRGEFEERLKKLMEEIK 361

[Close]

BLAST of MELO3C034656.2 vs. Swiss-Prot
Match: sp|Q7F9I1|CLPC1_ORYSJ (Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CLPC1 PE=2 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 2.8e-06
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1   MGLLVTGTKYRGEFEERLKKLMEEIK 27
           MGLLV GTKYRGEFEERLKKLMEEIK
Sbjct: 332 MGLLVAGTKYRGEFEERLKKLMEEIK 357

[Close]

BLAST of MELO3C034656.2 vs. Swiss-Prot
Match: sp|Q2QVG9|CLPC2_ORYSJ (Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CLPC2 PE=2 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 2.8e-06
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1   MGLLVTGTKYRGEFEERLKKLMEEIK 27
           MGLLV GTKYRGEFEERLKKLMEEIK
Sbjct: 333 MGLLVAGTKYRGEFEERLKKLMEEIK 358

[Close]

BLAST of MELO3C034656.2 vs. Swiss-Prot
Match: sp|P35100|CLPC_PEA (Chaperone protein ClpC, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.8e-06
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1   MGLLVTGTKYRGEFEERLKKLMEEIK 27
           MGLLV GTKYRGEFEERLKKLMEEIK
Sbjct: 336 MGLLVAGTKYRGEFEERLKKLMEEIK 361

[Close]

BLAST of MELO3C034656.2 vs. TrEMBL
Match: tr|M8AGK1|M8AGK1_TRIUA (ATP-dependent Clp protease ATP-binding subunit clpA-like protein CD4B, chloroplastic OS=Triticum urartu OX=4572 GN=TRIUR3_29726 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 5.7e-04
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1   MGLLVTGTKYRGEFEERLKKLMEEIK 27
           MGLLV GTKYRGEFEERLKKLMEEIK
Sbjct: 162 MGLLVAGTKYRGEFEERLKKLMEEIK 187

[Close]

BLAST of MELO3C034656.2 vs. TrEMBL
Match: tr|A0A2G5C7S5|A0A2G5C7S5_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_08000014v1 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 5.7e-04
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1   MGLLVTGTKYRGEFEERLKKLMEEIK 27
           MGLLV GTKYRGEFEERLKKLMEEIK
Sbjct: 336 MGLLVAGTKYRGEFEERLKKLMEEIK 361

[Close]

BLAST of MELO3C034656.2 vs. TrEMBL
Match: tr|A0A1U8G4Y6|A0A1U8G4Y6_CAPAN (ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4A, chloroplastic OS=Capsicum annuum OX=4072 GN=LOC107862127 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 5.7e-04
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1   MGLLVTGTKYRGEFEERLKKLMEEIK 27
           MGLLV GTKYRGEFEERLKKLMEEIK
Sbjct: 337 MGLLVAGTKYRGEFEERLKKLMEEIK 362

[Close]

BLAST of MELO3C034656.2 vs. TrEMBL
Match: tr|M7Y8C6|M7Y8C6_TRIUA (ATP-dependent Clp protease ATP-binding subunit clpA-like protein CD4B, chloroplastic OS=Triticum urartu OX=4572 GN=TRIUR3_22436 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 5.7e-04
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1   MGLLVTGTKYRGEFEERLKKLMEEIK 27
           MGLLV GTKYRGEFEERLKKLMEEIK
Sbjct: 301 MGLLVAGTKYRGEFEERLKKLMEEIK 326

[Close]

BLAST of MELO3C034656.2 vs. TrEMBL
Match: tr|M7Z383|M7Z383_TRIUA (ATP-dependent Clp protease ATP-binding subunit clpA-like protein CD4B, chloroplastic OS=Triticum urartu OX=4572 GN=TRIUR3_18196 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 5.7e-04
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 1   MGLLVTGTKYRGEFEERLKKLMEEIK 27
           MGLLV GTKYRGEFEERLKKLMEEIK
Sbjct: 308 MGLLVAGTKYRGEFEERLKKLMEEIK 333

The following BLAST results are available for this feature:

BLAST of MELO3C034656.2 vs. NCBI nr


Match Name	E-value	Identity	Description
AAD02267.1	8.6e-04	96.15	ClpC protease (chloroplast) [Spinacia oleracea]	[more]
XP_015620084.1	8.6e-04	96.15	chaperone protein ClpC2, chloroplastic [Oryza sativa Japonica Group] >XP_0156200...	[more]
EAZ30583.1	8.6e-04	96.15	hypothetical protein OsJ_14634 [Oryza sativa Japonica Group]	[more]
ABK95905.1	8.6e-04	96.15	unknown [Populus trichocarpa]	[more]
XP_002447724.1	8.6e-04	96.15	chaperone protein ClpC1, chloroplastic [Sorghum bicolor] >EES12052.1 hypothetica...	[more]

BLAST of MELO3C034656.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G48870.1	3.5e-07	92.31	Clp ATPase	[more]
AT5G50920.1	3.5e-07	92.31	CLPC homologue 1	[more]
AT1G74310.1	4.7e-04	65.38	heat shock protein 101	[more]

BLAST of MELO3C034656.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P31541\|CLPAA_SOLLC	2.8e-06	96.15	ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4A, chloroplastic ...	[more]
sp\|P31542\|CLPAB_SOLLC	2.8e-06	96.15	ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic ...	[more]
sp\|Q7F9I1\|CLPC1_ORYSJ	2.8e-06	96.15	Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
sp\|Q2QVG9\|CLPC2_ORYSJ	2.8e-06	96.15	Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
sp\|P35100\|CLPC_PEA	2.8e-06	96.15	Chaperone protein ClpC, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1	[more]

BLAST of MELO3C034656.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|M8AGK1\|M8AGK1_TRIUA	5.7e-04	96.15	ATP-dependent Clp protease ATP-binding subunit clpA-like protein CD4B, chloropla...	[more]
tr\|A0A2G5C7S5\|A0A2G5C7S5_AQUCA	5.7e-04	96.15	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_08000014v1 PE=3...	[more]
tr\|A0A1U8G4Y6\|A0A1U8G4Y6_CAPAN	5.7e-04	96.15	ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4A, chloroplastic ...	[more]
tr\|M7Y8C6\|M7Y8C6_TRIUA	5.7e-04	96.15	ATP-dependent Clp protease ATP-binding subunit clpA-like protein CD4B, chloropla...	[more]
tr\|M7Z383\|M7Z383_TRIUA	5.7e-04	96.15	ATP-dependent Clp protease ATP-binding subunit clpA-like protein CD4B, chloropla...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019538	protein metabolic process
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0008233	peptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034656.2.1	MELO3C034656.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C034656.2	Bottle gourd (USVL1VR-Ls)	lsimedB054
MELO3C034656.2	Watermelon (Charleston Gray)	medwcgB088
MELO3C034656.2	Watermelon (97103) v1	medwmB120
MELO3C034656.2	Silver-seed gourd	carmedB0420
MELO3C034656.2	Silver-seed gourd	carmedB0941
MELO3C034656.2	Cucumber (Chinese Long) v3	cucmedB096
MELO3C034656.2	Watermelon (97103) v2	medwmbB087
MELO3C034656.2	Wax gourd	medwgoB128
MELO3C034656.2	Cucumber (Gy14) v2	cgybmedB080
MELO3C034656.2	Cucumber (Gy14) v1	cgymedB071
MELO3C034656.2	Cucurbita maxima (Rimu)	cmamedB573
MELO3C034656.2	Cucurbita maxima (Rimu)	cmamedB616
MELO3C034656.2	Cucurbita moschata (Rifu)	cmomedB561
MELO3C034656.2	Cucurbita moschata (Rifu)	cmomedB605
MELO3C034656.2	Cucurbita pepo (Zucchini)	cpemedB306
MELO3C034656.2	Cucurbita pepo (Zucchini)	cpemedB807
MELO3C034656.2	Wild cucumber (PI 183967)	cpimedB088
MELO3C034656.2	Cucumber (Chinese Long) v2	cumedB088