MELO3C034654.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C034654.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionPseudouridine-5'-phosphate glycosidase
Locationchr11 : 8624414 .. 8624693 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATATCTTCTAATCTCACCAAGCTAGGAAGAACCCTTGTAGCTGTCATCTCAGCTGGTGTAAAATCGATATTAGACATCCCTAGGACCCTTGAATATTTAGTACAGTCTTCTATTTTCCTGCAATAAACCTTTTTACACATCATGCAGCTTTCTTTTTTATTTATTCACTGGCTCAAAAATGTTATTAACACAGGAAACTCAGGGAGTATGTGTTGCAGCTTATAGAACGACGGACGAATTTTTTGCTTTTTTCATGGAAACCAGTGGCTGCAAG

mRNA sequence

ATGGATATATCTTCTAATCTCACCAAGCTAGGAAGAACCCTTGTAGCTGTCATCTCAGCTGGTGTAAAATCGATATTAGACATCCCTAGGACCCTTGAATATTTAGAAACTCAGGGAGTATGTGTTGCAGCTTATAGAACGACGGACGAATTTTTTGCTTTTTTCATGGAAACCAGTGGCTGCAAG

Coding sequence (CDS)

ATGGATATATCTTCTAATCTCACCAAGCTAGGAAGAACCCTTGTAGCTGTCATCTCAGCTGGTGTAAAATCGATATTAGACATCCCTAGGACCCTTGAATATTTAGAAACTCAGGGAGTATGTGTTGCAGCTTATAGAACGACGGACGAATTTTTTGCTTTTTTCATGGAAACCAGTGGCTGCAAG

Protein sequence

MDISSNLTKLGRTLVAVISAGVKSILDIPRTLEYLETQGVCVAAYRTTDEFFAFFMETSGCK
Homology
[Close]
BLAST of MELO3C034654.2 vs. NCBI nr
Match: XP_022988167.1 (uncharacterized protein LOC111485484 [Cucurbita maxima])

HSP 1 Score: 105.1 bits (261), Expect = 8.5e-20
Identity = 56/62 (90.32%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1   MDISSNLTKLGRTLVAVISAGVKSILDIPRTLEYLETQGVCVAAYRTTDEFFAFFMETSG 60
           MDISS+LT+LGRT VAVISAGVKSILDIPRTLEYLETQGVCVAAYR TDEF AFF ETSG
Sbjct: 176 MDISSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVAAYR-TDEFPAFFTETSG 235

Query: 61  CK 63
           CK
Sbjct: 236 CK 236

[Close]
BLAST of MELO3C034654.2 vs. NCBI nr
Match: XP_023515450.1 (uncharacterized protein LOC111779605 [Cucurbita pepo subsp. pepo] >XP_023515451.1 uncharacterized protein LOC111779605 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 105.1 bits (261), Expect = 8.5e-20
Identity = 56/62 (90.32%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1   MDISSNLTKLGRTLVAVISAGVKSILDIPRTLEYLETQGVCVAAYRTTDEFFAFFMETSG 60
           MDISS+LT+LGRT VAVISAGVKSILDIPRTLEYLETQGVCVAAYR TDEF AFF ETSG
Sbjct: 177 MDISSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVAAYR-TDEFPAFFTETSG 236

Query: 61  CK 63
           CK
Sbjct: 237 CK 237

[Close]
BLAST of MELO3C034654.2 vs. NCBI nr
Match: XP_012065478.1 (uncharacterized protein LOC105628643 [Jatropha curcas] >KDP43637.1 hypothetical protein JCGZ_22951 [Jatropha curcas])

HSP 1 Score: 104.0 bits (258), Expect = 1.9e-19
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1   MDISSNLTKLGRTLVAVISAGVKSILDIPRTLEYLETQGVCVAAYRTTDEFFAFFMETSG 60
           MDISS+LT+LGRT VAVISAGVKSILDIPRTLEYLETQGVCVAAY+ TDEF AFF ETSG
Sbjct: 163 MDISSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVAAYK-TDEFPAFFTETSG 222

Query: 61  CK 63
           CK
Sbjct: 223 CK 223

[Close]
BLAST of MELO3C034654.2 vs. NCBI nr
Match: XP_023924233.1 (uncharacterized protein LOC112035633 isoform X1 [Quercus suber] >POE95963.1 pseudouridine-5'-phosphate glycosidase [Quercus suber])

HSP 1 Score: 103.6 bits (257), Expect = 2.5e-19
Identity = 54/62 (87.10%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1   MDISSNLTKLGRTLVAVISAGVKSILDIPRTLEYLETQGVCVAAYRTTDEFFAFFMETSG 60
           MDISS+LT+LGRT VAV+SAGVKSILDIPRTLEYLETQGVCVAAY+ TDEF AFF ETSG
Sbjct: 169 MDISSDLTELGRTPVAVVSAGVKSILDIPRTLEYLETQGVCVAAYK-TDEFPAFFTETSG 228

Query: 61  CK 63
           CK
Sbjct: 229 CK 229

[Close]
BLAST of MELO3C034654.2 vs. NCBI nr
Match: POE95962.1 (pseudouridine-5'-phosphate glycosidase [Quercus suber])

HSP 1 Score: 103.6 bits (257), Expect = 2.5e-19
Identity = 54/62 (87.10%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1   MDISSNLTKLGRTLVAVISAGVKSILDIPRTLEYLETQGVCVAAYRTTDEFFAFFMETSG 60
           MDISS+LT+LGRT VAV+SAGVKSILDIPRTLEYLETQGVCVAAY+ TDEF AFF ETSG
Sbjct: 169 MDISSDLTELGRTPVAVVSAGVKSILDIPRTLEYLETQGVCVAAYK-TDEFPAFFTETSG 228

Query: 61  CK 63
           CK
Sbjct: 229 CK 229

[Close]
BLAST of MELO3C034654.2 vs. TAIR10
Match: AT1G50510.1 (indigoidine synthase A family protein)

HSP 1 Score: 90.5 bits (223), Expect = 3.9e-19
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 0 

Query: 1   MDISSNLTKLGRTLVAVISAGVKSILDIPRTLEYLETQGVCVAAYRTTDEFFAFFMETSG 60
           MDISS+LT LGRT +AVISAGVKSILDIP+TLEYLETQ V VAAY+ +DEF AFF E SG
Sbjct: 163 MDISSDLTALGRTPIAVISAGVKSILDIPKTLEYLETQEVYVAAYK-SDEFPAFFTEKSG 222

Query: 61  CK 63
           CK
Sbjct: 223 CK 223

[Close]
BLAST of MELO3C034654.2 vs. Swiss-Prot
Match: sp|C0ZIY1|PSUG_BREBN (Pseudouridine-5'-phosphate glycosidase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) OX=358681 GN=psuG PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.4e-12
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 0 

Query: 2   DISSNLTKLGRTLVAVISAGVKSILDIPRTLEYLETQGVCVAAYRTTDEFFAFFMETSG 61
           D+S++LT+L +T VAV+ AG KSILDI RTLEYLETQGV V  YR TDEF +FF   SG
Sbjct: 138 DVSADLTELAQTDVAVVCAGAKSILDIGRTLEYLETQGVPVVGYR-TDEFPSFFARKSG 195

[Close]
BLAST of MELO3C034654.2 vs. Swiss-Prot
Match: sp|Q1M4T3|PSUG2_RHIL3 (Pseudouridine-5'-phosphate glycosidase 2 OS=Rhizobium leguminosarum bv. viciae (strain 3841) OX=216596 GN=psuG2 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.4e-12
Identity = 41/61 (67.21%), Postives = 46/61 (75.41%), Query Frame = 0 

Query: 2   DISSNLTKLGRTLVAVISAGVKSILDIPRTLEYLETQGVCVAAYRTTDEFFAFFMETSGC 61
           DIS++LT+LGRT  AV+ AGVKSILDI +TLEYLETQ V V AY T D F AFF   SG 
Sbjct: 139 DISADLTELGRTKTAVVCAGVKSILDIAKTLEYLETQRVPVIAYGTED-FPAFFTRRSGF 198

Query: 62  K 63
           K
Sbjct: 199 K 198

[Close]
BLAST of MELO3C034654.2 vs. Swiss-Prot
Match: sp|B8II14|PSUG_METNO (Pseudouridine-5'-phosphate glycosidase OS=Methylobacterium nodulans (strain LMG 21967 / CNCM I-2342 / ORS 2060) OX=460265 GN=psuG PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-11
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 0 

Query: 1   MDISSNLTKLGRTLVAVISAGVKSILDIPRTLEYLETQGVCVAAYRTTDEFFAFFMETSG 60
           +DIS++L +L RT VAV+ AG K+ILD+PRTLEYLET+GV V  YR TD F AF+   SG
Sbjct: 138 LDISADLDELARTPVAVVCAGAKAILDLPRTLEYLETRGVPVVGYR-TDRFPAFWSRDSG 196

[Close]
BLAST of MELO3C034654.2 vs. Swiss-Prot
Match: sp|B9LGZ1|PSUG_CHLSY (Pseudouridine-5'-phosphate glycosidase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) OX=480224 GN=psuG PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.9e-11
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = 0 

Query: 2   DISSNLTKLGRTLVAVISAGVKSILDIPRTLEYLETQGVCVAAYRTTDEFFAFFMETSG 61
           D+S++LT+LGRT V V+ AG K+ILD+P TLEYLETQGV V  Y+T  EF AF+   SG
Sbjct: 136 DVSADLTELGRTPVLVVCAGAKAILDLPATLEYLETQGVPVVGYQTV-EFPAFYTPHSG 193

[Close]
BLAST of MELO3C034654.2 vs. Swiss-Prot
Match: sp|Q8NYD0|PSUG_STAAW (Pseudouridine-5'-phosphate glycosidase OS=Staphylococcus aureus (strain MW2) OX=196620 GN=psuG PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 8.4e-11
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 0 

Query: 1   MDISSNLTKLGRTLVAVISAGVKSILDIPRTLEYLETQGVCVAAYRTTDEFFAFFMETSG 60
           MDIS++L +L +T V VI AG KSILD+P+T+EYLET+GV V  Y+ T+E  AFF   SG
Sbjct: 140 MDISADLEELSKTNVTVICAGAKSILDLPKTMEYLETKGVPVIGYQ-TNELPAFFTRESG 199

Query: 61  CK 63
            K
Sbjct: 200 VK 200

[Close]
BLAST of MELO3C034654.2 vs. TrEMBL
Match: tr|A0A067L5E0|A0A067L5E0_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_22951 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-19
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1   MDISSNLTKLGRTLVAVISAGVKSILDIPRTLEYLETQGVCVAAYRTTDEFFAFFMETSG 60
           MDISS+LT+LGRT VAVISAGVKSILDIPRTLEYLETQGVCVAAY+ TDEF AFF ETSG
Sbjct: 163 MDISSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVAAYK-TDEFPAFFTETSG 222

Query: 61  CK 63
           CK
Sbjct: 223 CK 223

[Close]
BLAST of MELO3C034654.2 vs. TrEMBL
Match: tr|A0A2P4KSM2|A0A2P4KSM2_QUESU (Pseudouridine-5'-phosphate glycosidase OS=Quercus suber OX=58331 GN=CFP56_47056 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-19
Identity = 54/62 (87.10%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1   MDISSNLTKLGRTLVAVISAGVKSILDIPRTLEYLETQGVCVAAYRTTDEFFAFFMETSG 60
           MDISS+LT+LGRT VAV+SAGVKSILDIPRTLEYLETQGVCVAAY+ TDEF AFF ETSG
Sbjct: 169 MDISSDLTELGRTPVAVVSAGVKSILDIPRTLEYLETQGVCVAAYK-TDEFPAFFTETSG 228

Query: 61  CK 63
           CK
Sbjct: 229 CK 229

[Close]
BLAST of MELO3C034654.2 vs. TrEMBL
Match: tr|A0A2P4KSF2|A0A2P4KSF2_QUESU (Pseudouridine-5'-phosphate glycosidase OS=Quercus suber OX=58331 GN=CFP56_47056 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-19
Identity = 54/62 (87.10%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1   MDISSNLTKLGRTLVAVISAGVKSILDIPRTLEYLETQGVCVAAYRTTDEFFAFFMETSG 60
           MDISS+LT+LGRT VAV+SAGVKSILDIPRTLEYLETQGVCVAAY+ TDEF AFF ETSG
Sbjct: 169 MDISSDLTELGRTPVAVVSAGVKSILDIPRTLEYLETQGVCVAAYK-TDEFPAFFTETSG 228

Query: 61  CK 63
           CK
Sbjct: 229 CK 229

[Close]
BLAST of MELO3C034654.2 vs. TrEMBL
Match: tr|A0A0A0LXQ4|A0A0A0LXQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G616850 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.1e-19
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1   MDISSNLTKLGRTLVAVISAGVKSILDIPRTLEYLETQGVCVAAYRTTDEFFAFFMETSG 60
           MDISS+LT+LGRT VAVISAGVKSILDIPRTLEYLETQGVCVAAYR T+EF AFF ETSG
Sbjct: 174 MDISSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVAAYR-TNEFPAFFTETSG 233

Query: 61  CK 63
           CK
Sbjct: 234 CK 234

[Close]
BLAST of MELO3C034654.2 vs. TrEMBL
Match: tr|M5X1Q1|M5X1Q1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa009681mg PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.8e-19
Identity = 54/62 (87.10%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1   MDISSNLTKLGRTLVAVISAGVKSILDIPRTLEYLETQGVCVAAYRTTDEFFAFFMETSG 60
           MDISS+LT+LGRT VAVISAGVKSILD+PRTLEYLETQGVCVAAYR T+EF AFF ETSG
Sbjct: 106 MDISSDLTELGRTPVAVISAGVKSILDVPRTLEYLETQGVCVAAYR-TNEFPAFFSETSG 165

Query: 61  CK 63
           CK
Sbjct: 166 CK 166

The following BLAST results are available for this feature:
BLAST of MELO3C034654.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022988167.18.5e-2090.32uncharacterized protein LOC111485484 [Cucurbita maxima][more]
XP_023515450.18.5e-2090.32uncharacterized protein LOC111779605 [Cucurbita pepo subsp. pepo] >XP_023515451.... [more]
XP_012065478.11.9e-1988.71uncharacterized protein LOC105628643 [Jatropha curcas] >KDP43637.1 hypothetical ... [more]
XP_023924233.12.5e-1987.10uncharacterized protein LOC112035633 isoform X1 [Quercus suber] >POE95963.1 pseu... [more]
POE95962.12.5e-1987.10pseudouridine-5'-phosphate glycosidase [Quercus suber][more]
BLAST of MELO3C034654.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G50510.13.9e-1979.03indigoidine synthase A family protein[more]
BLAST of MELO3C034654.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|C0ZIY1|PSUG_BREBN3.4e-1266.10Pseudouridine-5'-phosphate glycosidase OS=Brevibacillus brevis (strain 47 / JCM ... [more]
sp|Q1M4T3|PSUG2_RHIL34.4e-1267.21Pseudouridine-5'-phosphate glycosidase 2 OS=Rhizobium leguminosarum bv. viciae (... [more]
sp|B8II14|PSUG_METNO1.3e-1161.67Pseudouridine-5'-phosphate glycosidase OS=Methylobacterium nodulans (strain LMG ... [more]
sp|B9LGZ1|PSUG_CHLSY2.9e-1161.02Pseudouridine-5'-phosphate glycosidase OS=Chloroflexus aurantiacus (strain ATCC ... [more]
sp|Q8NYD0|PSUG_STAAW8.4e-1158.06Pseudouridine-5'-phosphate glycosidase OS=Staphylococcus aureus (strain MW2) OX=... [more]
BLAST of MELO3C034654.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A067L5E0|A0A067L5E0_JATCU1.2e-1988.71Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_22951 PE=3 SV=1[more]
tr|A0A2P4KSM2|A0A2P4KSM2_QUESU1.6e-1987.10Pseudouridine-5'-phosphate glycosidase OS=Quercus suber OX=58331 GN=CFP56_47056 ... [more]
tr|A0A2P4KSF2|A0A2P4KSF2_QUESU1.6e-1987.10Pseudouridine-5'-phosphate glycosidase OS=Quercus suber OX=58331 GN=CFP56_47056 ... [more]
tr|A0A0A0LXQ4|A0A0A0LXQ4_CUCSA2.1e-1988.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G616850 PE=3 SV=1[more]
tr|M5X1Q1|M5X1Q1_PRUPE2.8e-1987.10Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa009681mg PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016798hydrolase activity, acting on glycosyl bonds
Vocabulary: INTERPRO
TermDefinition
IPR007342PsuG
IPR022830Indigdn_synthA-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016798 hydrolase activity, acting on glycosyl bonds
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034654.2.1MELO3C034654.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022830Indigoidine synthase A-likeGENE3DG3DSA:3.40.1790.10coord: 1..62
e-value: 3.2E-26
score: 94.2
IPR022830Indigoidine synthase A-likeSUPERFAMILYSSF110581Indigoidine synthase A-likecoord: 1..62
IPR007342Pseudouridine-5'-phosphate glycosidasePFAMPF04227Indigoidine_Acoord: 1..62
e-value: 4.6E-25
score: 88.5
IPR007342Pseudouridine-5'-phosphate glycosidasePANTHERPTHR42909FAMILY NOT NAMEDcoord: 1..62

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C034654.2Silver-seed gourdcarmedB0420
MELO3C034654.2Cucumber (Chinese Long) v3cucmedB096
MELO3C034654.2Watermelon (97103) v2medwmbB087
MELO3C034654.2Wax gourdmedwgoB125
MELO3C034654.2Wax gourdmedwgoB128
MELO3C034654.2Cucumber (Gy14) v2cgybmedB080
MELO3C034654.2Cucumber (Gy14) v1cgymedB071
MELO3C034654.2Cucurbita maxima (Rimu)cmamedB573
MELO3C034654.2Cucurbita maxima (Rimu)cmamedB616
MELO3C034654.2Cucurbita moschata (Rifu)cmomedB561
MELO3C034654.2Cucurbita moschata (Rifu)cmomedB605
MELO3C034654.2Cucurbita pepo (Zucchini)cpemedB306
MELO3C034654.2Cucurbita pepo (Zucchini)cpemedB807
MELO3C034654.2Wild cucumber (PI 183967)cpimedB088
MELO3C034654.2Cucumber (Chinese Long) v2cumedB088
MELO3C034654.2Bottle gourd (USVL1VR-Ls)lsimedB054
MELO3C034654.2Watermelon (Charleston Gray)medwcgB088
MELO3C034654.2Watermelon (97103) v1medwmB120