MELO3C034633.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C034633.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Transmembrane protein, putative
Location	chr11 : 6863413 .. 6863894 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGAAGCAAAGAGCAAAGTTTACAAAAGCATATGGAAGCATAGGTGACCTTTTATACACTACCATTAATACATCAACATTGCAAGCTTTGTCACATTTCTGGGACCCTATGTTAAAGTGTTTCATGTTCAACACGTTCGACTTAACTCCTACTATAGAAGAATATCAAGCACTTATTAGCCTACCAGTTGACTGAGGGAATAAGTTGTACATCTATGATTGAAAGTTGACTCTACAACGGTCACTATCAAAGTTTATGGGTGACATTCATGCATCTGAGCTAAAGAAACAGATGAAGACAAAAGAAGGTTGGAATTGTATTCCTATCAATTATCTCATCAATCTTGTGCGTGGTTGTTTATCAGGGAAGAAGTTTTTTCTCTCATCGCATTATGTATCTATGGAACAATTATTTTTCCTAGAATTAACGGATATGTTGAAGAAGAGGTTGTTAAGATTTTTGTTGGGATAGAACGAGGG

mRNA sequence

ATGCCGAAGCAAAGAGCAAAGTTTACAAAAGCATATGGAAGCATAGGTGACCTTTTATACACTACCATTAATACATCAACATTGCAAGCTTTGTCACATTTCTGGGACCCTATGTTAAAGTGTTTCATGTTCAACACGTTCGACTTAACTCCTACTATAGAAGAATATCAAGCACTTATTAGCCTACCAGTTGACTGAGGGAATAAGTTGTACATCTATGATTGAAAGTTGACTCTACAACGGTCACTATCAAAGTTTATGGGTGACATTCATGCATCTGAGCTAAAGAAACAGATGAAGACAAAAGAAGTTATTTTTCCTAGAATTAACGGATATGTTGAAGAAGAGGTTGTTAAGATTTTTGTTGGGATAGAACGAGGG

Coding sequence (CDS)

ATGCCGAAGCAAAGAGCAAAGTTTACAAAAGCATATGGAAGCATAGGTGACCTTTTATACACTACCATTAATACATCAACATTGCAAGCTTTGTCACATTTCTGGGACCCTATGTTAAAGTGTTTCATGTTCAACACGTTCGACTTAACTCCTACTATAGAAGAATATCAAGCACTTATTAGCCTACCAGTTGACTGA

Protein sequence

MPKQRAKFTKAYGSIGDLLYTTINTSTLQALSHFWDPMLKCFMFNTFDLTPTIEEYQALISLPVD

Homology

[Close]

BLAST of MELO3C034633.2 vs. NCBI nr
Match: XP_022147190.1 (uncharacterized protein LOC111016201 [Momordica charantia])

HSP 1 Score: 73.6 bits (179), Expect = 2.9e-10
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 2   PKQRAKFTKAYGSIGDLLYTTINTSTLQALSHFWDPMLKCFMFNTFDLTPTIEEYQALIS 61
           P ++ +F K YG I  LLY  +N S L+AL   WDP  +CF F++ D+TPTIEEY  L+ 
Sbjct: 64  PDRKTQFIKKYGHIAQLLYVRVNFSVLRALVQHWDPPYRCFTFSSMDITPTIEEYHTLLQ 123

Query: 62  LPV 65
           +P+
Sbjct: 124 IPL 126

[Close]

BLAST of MELO3C034633.2 vs. NCBI nr
Match: EOY00466.1 (Uncharacterized protein TCM_010343 [Theobroma cacao])

HSP 1 Score: 67.4 bits (163), Expect = 2.0e-08
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 5   RAKFTKAYGSIGDLLYTTINTSTLQALSHFWDPMLKCFMFNTFDLTPTIEEYQALISLPV 64
           RA F + YG I  LL   ++   L+A+  FWDP  +CF+FN  D+ PTIEEY AL+ + +
Sbjct: 67  RANFDRKYGHIARLLKVQVDEQLLKAIMQFWDPSYRCFVFNKVDMVPTIEEYSALLQIDL 126

Query: 65  D 66
           D
Sbjct: 127 D 127

[Close]

BLAST of MELO3C034633.2 vs. NCBI nr
Match: XP_017976062.1 (PREDICTED: uncharacterized protein LOC18599917 [Theobroma cacao])

HSP 1 Score: 67.4 bits (163), Expect = 2.0e-08
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 5   RAKFTKAYGSIGDLLYTTINTSTLQALSHFWDPMLKCFMFNTFDLTPTIEEYQALISLPV 64
           RA F + YG I  LL   I+   L+A+  FWDP  +CF+FN  D+ PTIEEY AL+ + +
Sbjct: 67  RANFDRKYGHIARLLKVQIDEQLLKAIVQFWDPSYRCFVFNKVDMVPTIEEYSALLQIDL 126

Query: 65  D 66
           D
Sbjct: 127 D 127

[Close]

BLAST of MELO3C034633.2 vs. NCBI nr
Match: EOX91780.1 (Uncharacterized protein TCM_000857 [Theobroma cacao])

HSP 1 Score: 67.0 bits (162), Expect = 2.7e-08
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 5   RAKFTKAYGSIGDLLYTTINTSTLQALSHFWDPMLKCFMFNTFDLTPTIEEYQALISLPV 64
           RA F + YG I  LL   ++   L+A+  FWDP  +CF+FN  D+ PTIEEY AL+ + +
Sbjct: 67  RANFDRKYGHIARLLKVQVDEQLLKAIVQFWDPSYRCFVFNKVDMVPTIEEYSALLQIDL 126

Query: 65  D 66
           D
Sbjct: 127 D 127

[Close]

BLAST of MELO3C034633.2 vs. NCBI nr
Match: EOX99415.1 (Uncharacterized protein TCM_008095 [Theobroma cacao])

HSP 1 Score: 67.0 bits (162), Expect = 2.7e-08
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 5   RAKFTKAYGSIGDLLYTTINTSTLQALSHFWDPMLKCFMFNTFDLTPTIEEYQALISLPV 64
           RA F + YG I  LL   ++   L+A+  FWDP  +CF+FN  D+ PTIEEY AL+ + +
Sbjct: 67  RANFDRKYGHIARLLKVQVDEQLLKAIVQFWDPSYRCFVFNKVDMVPTIEEYSALLQIDL 126

Query: 65  D 66
           D
Sbjct: 127 D 127

[Close]

BLAST of MELO3C034633.2 vs. TrEMBL
Match: tr|A0A061E660|A0A061E660_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_010343 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 5   RAKFTKAYGSIGDLLYTTINTSTLQALSHFWDPMLKCFMFNTFDLTPTIEEYQALISLPV 64
           RA F + YG I  LL   ++   L+A+  FWDP  +CF+FN  D+ PTIEEY AL+ + +
Sbjct: 67  RANFDRKYGHIARLLKVQVDEQLLKAIMQFWDPSYRCFVFNKVDMVPTIEEYSALLQIDL 126

Query: 65  D 66
           D
Sbjct: 127 D 127

[Close]

BLAST of MELO3C034633.2 vs. TrEMBL
Match: tr|A0A061DHA9|A0A061DHA9_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_000857 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-08
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 5   RAKFTKAYGSIGDLLYTTINTSTLQALSHFWDPMLKCFMFNTFDLTPTIEEYQALISLPV 64
           RA F + YG I  LL   ++   L+A+  FWDP  +CF+FN  D+ PTIEEY AL+ + +
Sbjct: 67  RANFDRKYGHIARLLKVQVDEQLLKAIVQFWDPSYRCFVFNKVDMVPTIEEYSALLQIDL 126

Query: 65  D 66
           D
Sbjct: 127 D 127

[Close]

BLAST of MELO3C034633.2 vs. TrEMBL
Match: tr|A0A061FRM2|A0A061FRM2_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_044705 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-08
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 5   RAKFTKAYGSIGDLLYTTINTSTLQALSHFWDPMLKCFMFNTFDLTPTIEEYQALISLPV 64
           RA F + YG I  LL   ++   L+A+  FWDP  +CF+FN  D+ PTIEEY AL+ + +
Sbjct: 168 RANFDRKYGHIARLLKVQVDEQLLKAIVQFWDPSYRCFVFNKVDMVPTIEEYSALLQIDL 227

Query: 65  D 66
           D
Sbjct: 228 D 228

[Close]

BLAST of MELO3C034633.2 vs. TrEMBL
Match: tr|A0A061F212|A0A061F212_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_025984 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-08
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 5   RAKFTKAYGSIGDLLYTTINTSTLQALSHFWDPMLKCFMFNTFDLTPTIEEYQALISLPV 64
           RA F + YG I  LL   ++   L+A+  FWDP  +CF+FN  D+ PTIEEY AL+ + +
Sbjct: 67  RANFDRKYGHIARLLKVQVDEQLLKAIVQFWDPSYRCFVFNKVDMVPTIEEYSALLQIDL 126

Query: 65  D 66
           D
Sbjct: 127 D 127

[Close]

BLAST of MELO3C034633.2 vs. TrEMBL
Match: tr|A0A061FTR1|A0A061FTR1_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_012142 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-08
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 5   RAKFTKAYGSIGDLLYTTINTSTLQALSHFWDPMLKCFMFNTFDLTPTIEEYQALISLPV 64
           RA F + YG I  LL   ++   L+A+  FWDP  +CF+FN  D+ PTIEEY AL+ + +
Sbjct: 85  RANFDRKYGHIARLLKVQVDEQLLKAIVQFWDPSYRCFVFNKVDMVPTIEEYSALLQIDL 144

Query: 65  D 66
           D
Sbjct: 145 D 145

The following BLAST results are available for this feature:

BLAST of MELO3C034633.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147190.1	2.9e-10	47.62	uncharacterized protein LOC111016201 [Momordica charantia]	[more]
EOY00466.1	2.0e-08	45.90	Uncharacterized protein TCM_010343 [Theobroma cacao]	[more]
XP_017976062.1	2.0e-08	47.54	PREDICTED: uncharacterized protein LOC18599917 [Theobroma cacao]	[more]
EOX91780.1	2.7e-08	45.90	Uncharacterized protein TCM_000857 [Theobroma cacao]	[more]
EOX99415.1	2.7e-08	45.90	Uncharacterized protein TCM_008095 [Theobroma cacao]	[more]

BLAST of MELO3C034633.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C034633.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C034633.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A061E660\|A0A061E660_THECC	1.4e-08	45.90	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_010343 PE=4 SV=1	[more]
tr\|A0A061DHA9\|A0A061DHA9_THECC	1.8e-08	45.90	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_000857 PE=4 SV=1	[more]
tr\|A0A061FRM2\|A0A061FRM2_THECC	1.8e-08	45.90	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_044705 PE=4 SV=1	[more]
tr\|A0A061F212\|A0A061F212_THECC	1.8e-08	45.90	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_025984 PE=4 SV=1	[more]
tr\|A0A061FTR1\|A0A061FTR1_THECC	1.8e-08	45.90	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_012142 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034633.2.1	MELO3C034633.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C034633.2	Cucumber (Gy14) v2	cgybmedB080
MELO3C034633.2	Cucumber (Gy14) v1	cgymedB525
MELO3C034633.2	Cucurbita maxima (Rimu)	cmamedB573
MELO3C034633.2	Cucurbita maxima (Rimu)	cmamedB614
MELO3C034633.2	Cucurbita maxima (Rimu)	cmamedB616
MELO3C034633.2	Cucurbita moschata (Rifu)	cmomedB561
MELO3C034633.2	Cucurbita moschata (Rifu)	cmomedB605
MELO3C034633.2	Wild cucumber (PI 183967)	cpimedB088
MELO3C034633.2	Cucumber (Chinese Long) v2	cumedB088
MELO3C034633.2	Bottle gourd (USVL1VR-Ls)	lsimedB054
MELO3C034633.2	Watermelon (Charleston Gray)	medwcgB076
MELO3C034633.2	Watermelon (97103) v1	medwmB086
MELO3C034633.2	Silver-seed gourd	carmedB0431
MELO3C034633.2	Cucumber (Chinese Long) v3	cucmedB096
MELO3C034633.2	Watermelon (97103) v2	medwmbB123
MELO3C034633.2	Wax gourd	medwgoB128
MELO3C034633.2	Wax gourd	medwgoB139