MELO3C034569.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C034569.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	glial fibrillary acidic protein-like
Location	chr11 : 1621684 .. 1622413 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGAATCTTTAGTTCCAAACATAGAATTGAAGAAATATCATGTTATGATAAAGAAAAGGAATTAAAGCGATTAAGAGAATGAATTGTGTTTTGGCAACAGAGAACGAAAAGTTAAGAGAGGAAGTCAAGAAATGGGTTCAGCAAGCTGTTATTACTCAAAGAGATTTGGACGAGGCAAAAAGAAAGCAATTGGAGCTGGAGAAGGAAAATGATTCTTTAAACACTGAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAATATTGCCAACTTACATGAAGAGACAGAAGCTAAAAAGGTATGCATTACAGATTTGAAACATGAAATAGTAAGATTGAATGAGGTTGCTTTAGAATTCCAAAATGCATTACATGAACAAGCCACGTCATCTTAACAGACCTCTATGAAAATCGAGGTTCTACAACATTCGATTAAAGAATACAAGTCTTAGCTTATAGAAGCGGAAAGCAAAAATAGATTTTTATAAAAAGCCGTTAACAGTTCTGAAAGCCAGTTGCTGATATGTCGCAAAACAAGGAAGGTCGCAATAGATGACTACACTCAATTAATAGAAAAATATCAAGAAATGTCGATAGATTTCATGATGTGGAGGGACGAGTATGAGATATTGAGATGGAAGTATGATAGTGCTAGAGGTCAGATGGAACGAGGGGCTGAAAAATTAAGACAAATGGCGAGGATGGCAGATCAACTCTCA

mRNA sequence

ATGCCAGAATCTTTAGTTCCAAACATAGAATTGAAGAAATATCATGTTATGATAAAGAAAAGGAATTAAAGCGATTAAGAGAATGAATTGTGTTTTGGCAACAGAGAACGAAAAGTTAAGAGAGGAAGTCAAGAAATGGGTTCAGCAAGCTGTTATTACTCAAAGAGATTTGGACGAGGCAAAAAGAAAGCAATTGGAGCTGGAGAAGGAAAATGATTCTTTAAACACTGAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAATATTGCCAACTTACATGAAGAGACAGAAGCTAAAAAGACCTCTATGAAAATCGAGGTTCTACAACATTCGATTAAAGAATACAAGTCTTAGCTTATAGAAGCGGAAAGCAAAAATAGATTTTTATAAAAAGCCGTTAACAGTTCTGAAAGCCAGTTGCTGATATGTCGCAAAACAAGGAAGGTCGCAATAGATGACTACACTCAATTAATAGAAAAATATCAAGAAATGTCGATAGATTTCATGATGTGGAGGGACGAGTATGAGATATTGAGATGGAAGTATGATAGTGCTAGAGGTCAGATGGAACGAGGGGCTGAAAAATTAAGACAAATGGCGAGGATGGCAGATCAACTCTCA

Coding sequence (CDS)

ATGAATTGTGTTTTGGCAACAGAGAACGAAAAGTTAAGAGAGGAAGTCAAGAAATGGGTTCAGCAAGCTGTTATTACTCAAAGAGATTTGGACGAGGCAAAAAGAAAGCAATTGGAGCTGGAGAAGGAAAATGATTCTTTAAACACTGAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAATATTGCCAACTTACATGAAGAGACAGAAGCTAAAAAGACCTCTATGAAAATCGAGGTTCTACAACATTCGATTAAAGAATACAAGTCTTAG

Protein sequence

MNCVLATENEKLREEVKKWVQQAVITQRDLDEAKRKQLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEETEAKKTSMKIEVLQHSIKEYKS

Homology

[Close]

BLAST of MELO3C034569.2 vs. NCBI nr
Match: XP_008464352.1 (PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 1.7e-32
Identity = 86/108 (79.63%), Postives = 90/108 (83.33%), Query Frame = 0


Query: 1   MNCVLATENEKLREEVKKWVQQAVITQRDLDEAKRKQLELEKENDSLNTEAIQVRKKNKR 60
           MNCVLATENEKLREEVKKWVQQAV TQRDLDEAKRK+LELEKENDSLNTEAIQVRKKNKR
Sbjct: 27  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 86

Query: 61  LLRNIANLHEETEAKK---------------TSMKIEVLQHSIKEYKS 94
           LLRNIANLHEE EA+K               T+M IEVLQHSI+EYKS
Sbjct: 87  LLRNIANLHEEIEAEKEFQNALHEQAISSQQTAMGIEVLQHSIEEYKS 134

[Close]

BLAST of MELO3C034569.2 vs. NCBI nr
Match: KGN65327.1 (hypothetical protein Csa_1G328390 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-14
Identity = 50/83 (60.24%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 1  MNCVLATENEKLREEVKKWVQQAVITQRDLDEAKR---KQLELEKENDSLNTEAIQVRKK 60
          M+ VLATENE LR+EVK+WVQ+A  ++R L+EA+R   +Q ELEK+ +SLN EAIQ+RKK
Sbjct: 1  MSHVLATENEGLRKEVKRWVQKATTSERQLEEAQRHLQRQSELEKDMNSLNIEAIQIRKK 60

Query: 61 NKRLLRNIANLHEETEAKKTSMK 81
          NKRLLR+IA +H E EA+K  ++
Sbjct: 61 NKRLLRDIATMHSEAEAQKVCIR 83

[Close]

BLAST of MELO3C034569.2 vs. TrEMBL
Match: tr|A0A1S3CLQ1|A0A1S3CLQ1_CUCME (glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-32
Identity = 86/108 (79.63%), Postives = 90/108 (83.33%), Query Frame = 0


Query: 1   MNCVLATENEKLREEVKKWVQQAVITQRDLDEAKRKQLELEKENDSLNTEAIQVRKKNKR 60
           MNCVLATENEKLREEVKKWVQQAV TQRDLDEAKRK+LELEKENDSLNTEAIQVRKKNKR
Sbjct: 27  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 86

Query: 61  LLRNIANLHEETEAKK---------------TSMKIEVLQHSIKEYKS 94
           LLRNIANLHEE EA+K               T+M IEVLQHSI+EYKS
Sbjct: 87  LLRNIANLHEEIEAEKEFQNALHEQAISSQQTAMGIEVLQHSIEEYKS 134

[Close]

BLAST of MELO3C034569.2 vs. TrEMBL
Match: tr|A0A0A0LWU7|A0A0A0LWU7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G328390 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.1e-15
Identity = 50/83 (60.24%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 1  MNCVLATENEKLREEVKKWVQQAVITQRDLDEAKR---KQLELEKENDSLNTEAIQVRKK 60
          M+ VLATENE LR+EVK+WVQ+A  ++R L+EA+R   +Q ELEK+ +SLN EAIQ+RKK
Sbjct: 1  MSHVLATENEGLRKEVKRWVQKATTSERQLEEAQRHLQRQSELEKDMNSLNIEAIQIRKK 60

Query: 61 NKRLLRNIANLHEETEAKKTSMK 81
          NKRLLR+IA +H E EA+K  ++
Sbjct: 61 NKRLLRDIATMHSEAEAQKVCIR 83

The following BLAST results are available for this feature:

BLAST of MELO3C034569.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464352.1	1.7e-32	79.63	PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo]	[more]
KGN65327.1	1.2e-14	60.24	hypothetical protein Csa_1G328390 [Cucumis sativus]	[more]

BLAST of MELO3C034569.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C034569.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C034569.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CLQ1\|A0A1S3CLQ1_CUCME	1.1e-32	79.63	glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=...	[more]
tr\|A0A0A0LWU7\|A0A0A0LWU7_CUCSA	8.1e-15	60.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G328390 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034569.2.1	MELO3C034569.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 9..71

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C034569.2	Cucumber (Gy14) v2	cgybmedB074
MELO3C034569.2	Cucumber (Gy14) v2	cgybmedB449
MELO3C034569.2	Cucumber (Gy14) v1	cgymedB148
MELO3C034569.2	Cucumber (Gy14) v1	cgymedB608
MELO3C034569.2	Cucurbita maxima (Rimu)	cmamedB580
MELO3C034569.2	Cucurbita maxima (Rimu)	cmamedB628
MELO3C034569.2	Cucurbita moschata (Rifu)	cmomedB568
MELO3C034569.2	Cucurbita moschata (Rifu)	cmomedB617
MELO3C034569.2	Cucurbita pepo (Zucchini)	cpemedB253
MELO3C034569.2	Cucurbita pepo (Zucchini)	cpemedB293
MELO3C034569.2	Wild cucumber (PI 183967)	cpimedB081
MELO3C034569.2	Cucurbita pepo (Zucchini)	cpemedB786
MELO3C034569.2	Wild cucumber (PI 183967)	cpimedB263
MELO3C034569.2	Wild cucumber (PI 183967)	cpimedB503
MELO3C034569.2	Cucumber (Chinese Long) v2	cumedB081
MELO3C034569.2	Cucumber (Chinese Long) v2	cumedB263
MELO3C034569.2	Cucumber (Chinese Long) v2	cumedB493
MELO3C034569.2	Melon (DHL92) v3.6.1	medmedB041
MELO3C034569.2	Bottle gourd (USVL1VR-Ls)	lsimedB047
MELO3C034569.2	Bottle gourd (USVL1VR-Ls)	lsimedB090
MELO3C034569.2	Bottle gourd (USVL1VR-Ls)	lsimedB448
MELO3C034569.2	Watermelon (Charleston Gray)	medwcgB106
MELO3C034569.2	Watermelon (Charleston Gray)	medwcgB080
MELO3C034569.2	Watermelon (97103) v1	medwmB124
MELO3C034569.2	Watermelon (97103) v1	medwmB130
MELO3C034569.2	Silver-seed gourd	carmedB0111
MELO3C034569.2	Silver-seed gourd	carmedB0314
MELO3C034569.2	Silver-seed gourd	carmedB0329
MELO3C034569.2	Cucumber (Chinese Long) v3	cucmedB089
MELO3C034569.2	Cucumber (Chinese Long) v3	cucmedB518
MELO3C034569.2	Watermelon (97103) v2	medwmbB082
MELO3C034569.2	Watermelon (97103) v2	medwmbB105
MELO3C034569.2	Wax gourd	medwgoB133