MELO3C034567.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C034567.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	exopolygalacturonase-like
Location	chr11 : 1490997 .. 1491217 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGATATCAAACTTTGTGGCATTATTACCGGTGTTATTATTGTTGGTGTCTAATTCTAAAGCTCAATCTAGTGGTAGTGTTTTTGATATCACAAAATACGGTGCCAAACCTAATGCAGATGTAACTGCGGTATGAGTACTTGCATTAGTTGGATGAGCGATTTTAATTTATGTGAATTAAAACATTTTAGTTATCAAATGAAATGATTTAATTTA

mRNA sequence

ATGGGTTTGATATCAAACTTTGTGGCATTATTACCGGTGTTATTATTGTTGGTGTCTAATTCTaAAGCTCAATCTAGTGGTAGTGTTTTTGATATCACAAAATACGGTGCCAAACCTAATGCAGATGTAACTGCGGTATGAGTACTTGCATTAGTTGGATGAGCGATTTTAATTTATGTGAATTAAAACATTTTAGTTATCAAATGAAATGATTTAATTTA

Coding sequence (CDS)

ATGGGTTTGATATCAAACTTTGTGGCATTATTACCGGTGTTATTATTGTTGGTGTCTAATTCTAAAGCTCAATCTAGTGGTAGTGTTTTTGATATCACAAAATACGGTGCCAAACCTAATGCAGATGTAACTGCGGTATGA

Protein sequence

MGLISNFVALLPVLLLLVSNSKAQSSGSVFDITKYGAKPNADVTAV

Homology

[Close]

BLAST of MELO3C034567.2 vs. NCBI nr
Match: XP_008449696.2 (PREDICTED: LOW QUALITY PROTEIN: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 3.7e-12
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 1  MGLISNFVALLPVLLLLVSNSKAQSSGSVFDITKYGAKPNADVTA 46
          MGLISNFVALLPVLLLLVSNSKAQS+  VFDITKYGAKPNAD+TA
Sbjct: 12 MGLISNFVALLPVLLLLVSNSKAQSAAGVFDITKYGAKPNADITA 56

[Close]

BLAST of MELO3C034567.2 vs. NCBI nr
Match: XP_008449697.2 (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 3.5e-10
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 1  MGLISNFVALLPVLLLLVSNSKAQSSGSVFDITKYGAKPNADVTA 46
          MGLISNFVALLP +LLLVSNSKAQS+  VFDITKYGAKPNAD+TA
Sbjct: 24 MGLISNFVALLP-MLLLVSNSKAQSAAGVFDITKYGAKPNADITA 67

[Close]

BLAST of MELO3C034567.2 vs. NCBI nr
Match: XP_008441641.1 (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-08
Identity = 34/44 (77.27%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 1  MGLISNFVALLPVLLLLVSNSKAQSSGSVFDITKYGAKPNADVT 45
          MGL SNFVALL + LLLVSNSKAQSSG+VFD+T +GAKP+AD+T
Sbjct: 1  MGLRSNFVALLLLFLLLVSNSKAQSSGAVFDVTSFGAKPDADIT 44

[Close]

BLAST of MELO3C034567.2 vs. NCBI nr
Match: XP_022929731.1 (exopolygalacturonase-like [Cucurbita moschata] >XP_022929733.1 exopolygalacturonase-like [Cucurbita moschata] >XP_022929734.1 exopolygalacturonase-like [Cucurbita moschata])

HSP 1 Score: 64.7 bits (156), Expect = 9.4e-08
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 1  MGLISNFVALLPVLLLLVSNSKAQSSGSVFDITKYGAKPNADVT 45
          MGLIS F+AL+P+LLLLVSN+ A ++  VFDITK+GAKPNADVT
Sbjct: 1  MGLISKFMALIPLLLLLVSNATADATSGVFDITKFGAKPNADVT 44

[Close]

BLAST of MELO3C034567.2 vs. NCBI nr
Match: XP_022933149.1 (exopolygalacturonase-like [Cucurbita moschata] >XP_022933150.1 exopolygalacturonase-like [Cucurbita moschata] >XP_022933164.1 exopolygalacturonase-like [Cucurbita moschata] >XP_022933165.1 exopolygalacturonase-like [Cucurbita moschata])

HSP 1 Score: 64.7 bits (156), Expect = 9.4e-08
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 1  MGLISNFVALLPVLLLLVSNSKAQSSGSVFDITKYGAKPNADVT 45
          MGLIS F+AL+P+LLLLVSN+ A ++  VFDITK+GAKPNADVT
Sbjct: 1  MGLISKFMALIPLLLLLVSNATADATSGVFDITKFGAKPNADVT 44

[Close]

BLAST of MELO3C034567.2 vs. TrEMBL
Match: tr|A0A1S3BML3|A0A1S3BML3_CUCME (LOW QUALITY PROTEIN: exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103491497 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.4e-12
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 1  MGLISNFVALLPVLLLLVSNSKAQSSGSVFDITKYGAKPNADVTA 46
          MGLISNFVALLPVLLLLVSNSKAQS+  VFDITKYGAKPNAD+TA
Sbjct: 12 MGLISNFVALLPVLLLLVSNSKAQSAAGVFDITKYGAKPNADITA 56

[Close]

BLAST of MELO3C034567.2 vs. TrEMBL
Match: tr|A0A1S3BN96|A0A1S3BN96_CUCME (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103491498 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.3e-10
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 1  MGLISNFVALLPVLLLLVSNSKAQSSGSVFDITKYGAKPNADVTA 46
          MGLISNFVALLP +LLLVSNSKAQS+  VFDITKYGAKPNAD+TA
Sbjct: 24 MGLISNFVALLP-MLLLVSNSKAQSAAGVFDITKYGAKPNADITA 67

[Close]

BLAST of MELO3C034567.2 vs. TrEMBL
Match: tr|A0A1S3B3X5|A0A1S3B3X5_CUCME (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103485719 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-08
Identity = 34/44 (77.27%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 1  MGLISNFVALLPVLLLLVSNSKAQSSGSVFDITKYGAKPNADVT 45
          MGL SNFVALL + LLLVSNSKAQSSG+VFD+T +GAKP+AD+T
Sbjct: 1  MGLRSNFVALLLLFLLLVSNSKAQSSGAVFDVTSFGAKPDADIT 44

[Close]

BLAST of MELO3C034567.2 vs. TrEMBL
Match: tr|A0A0A0LX75|A0A0A0LX75_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G066500 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.3e-07
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1  MGLISNFVALLPVLLLLVSNSKAQSS--GSVFDITKYGAKPNADVTAV 47
          MGL SNFV LLP+ LLLVSN+K QS+  G VFD+T +GAKPN D+T V
Sbjct: 1  MGLRSNFVTLLPLFLLLVSNAKGQSAAGGGVFDVTSFGAKPNGDITGV 48

[Close]

BLAST of MELO3C034567.2 vs. TrEMBL
Match: tr|A0A0A0KF15|A0A0A0KF15_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G434410 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.3e-07
Identity = 36/60 (60.00%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 1  MGLISNFVALLPVLLLLVSNSKAQSSGS---------------VFDITKYGAKPNADVTA 46
          MGLISN VA+LP+LLLLVSNSKAQ + +                FDITKYGAKPNAD+TA
Sbjct: 1  MGLISNIVAILPLLLLLVSNSKAQPAAAXXXXXXXXXXXXXXXXFDITKYGAKPNADITA 60

The following BLAST results are available for this feature:

BLAST of MELO3C034567.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449696.2	3.7e-12	91.11	PREDICTED: LOW QUALITY PROTEIN: exopolygalacturonase-like [Cucumis melo]	[more]
XP_008449697.2	3.5e-10	86.67	PREDICTED: exopolygalacturonase-like [Cucumis melo]	[more]
XP_008441641.1	2.5e-08	77.27	PREDICTED: exopolygalacturonase-like [Cucumis melo]	[more]
XP_022929731.1	9.4e-08	72.73	exopolygalacturonase-like [Cucurbita moschata] >XP_022929733.1 exopolygalacturon...	[more]
XP_022933149.1	9.4e-08	72.73	exopolygalacturonase-like [Cucurbita moschata] >XP_022933150.1 exopolygalacturon...	[more]

BLAST of MELO3C034567.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C034567.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C034567.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BML3\|A0A1S3BML3_CUCME	2.4e-12	91.11	LOW QUALITY PROTEIN: exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A1S3BN96\|A0A1S3BN96_CUCME	2.3e-10	86.67	exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103491498 PE=3 SV=1	[more]
tr\|A0A1S3B3X5\|A0A1S3B3X5_CUCME	1.6e-08	77.27	exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103485719 PE=3 SV=1	[more]
tr\|A0A0A0LX75\|A0A0A0LX75_CUCSA	5.3e-07	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G066500 PE=3 SV=1	[more]
tr\|A0A0A0KF15\|A0A0A0KF15_CUCSA	5.3e-07	60.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G434410 PE=3 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004650	polygalacturonase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034567.2.1	MELO3C034567.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C034567.2	Cucumber (Gy14) v2	cgybmedB074
MELO3C034567.2	Cucumber (Gy14) v2	cgybmedB449
MELO3C034567.2	Cucumber (Gy14) v1	cgymedB148
MELO3C034567.2	Cucumber (Gy14) v1	cgymedB608
MELO3C034567.2	Cucurbita maxima (Rimu)	cmamedB580
MELO3C034567.2	Cucurbita maxima (Rimu)	cmamedB628
MELO3C034567.2	Cucurbita moschata (Rifu)	cmomedB568
MELO3C034567.2	Cucurbita moschata (Rifu)	cmomedB617
MELO3C034567.2	Cucurbita pepo (Zucchini)	cpemedB253
MELO3C034567.2	Cucurbita pepo (Zucchini)	cpemedB293
MELO3C034567.2	Wild cucumber (PI 183967)	cpimedB081
MELO3C034567.2	Cucurbita pepo (Zucchini)	cpemedB786
MELO3C034567.2	Wild cucumber (PI 183967)	cpimedB263
MELO3C034567.2	Wild cucumber (PI 183967)	cpimedB503
MELO3C034567.2	Cucumber (Chinese Long) v2	cumedB081
MELO3C034567.2	Cucumber (Chinese Long) v2	cumedB263
MELO3C034567.2	Cucumber (Chinese Long) v2	cumedB493
MELO3C034567.2	Melon (DHL92) v3.6.1	medmedB041
MELO3C034567.2	Bottle gourd (USVL1VR-Ls)	lsimedB047
MELO3C034567.2	Bottle gourd (USVL1VR-Ls)	lsimedB090
MELO3C034567.2	Bottle gourd (USVL1VR-Ls)	lsimedB448
MELO3C034567.2	Watermelon (Charleston Gray)	medwcgB106
MELO3C034567.2	Watermelon (Charleston Gray)	medwcgB080
MELO3C034567.2	Watermelon (97103) v1	medwmB124
MELO3C034567.2	Watermelon (97103) v1	medwmB130
MELO3C034567.2	Silver-seed gourd	carmedB0111
MELO3C034567.2	Silver-seed gourd	carmedB0314
MELO3C034567.2	Silver-seed gourd	carmedB0329
MELO3C034567.2	Cucumber (Chinese Long) v3	cucmedB089
MELO3C034567.2	Cucumber (Chinese Long) v3	cucmedB518
MELO3C034567.2	Watermelon (97103) v2	medwmbB082
MELO3C034567.2	Watermelon (97103) v2	medwmbB105
MELO3C034567.2	Wax gourd	medwgoB133