MELO3C034566.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C034566.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	At5g12930
Location	chr11 : 448768 .. 451344 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATGCAACATAAGCTTGATGATCTATGTAATCAAATGAATCCCGTTAAGGATCAAACTGACTTGGAAGATTCTGAGGCATTTAGGAATCATAAAATCAAATTCCTTAATTGTCGTTGTTGGCTTTGTGATGAGCATCTTGATTTGCTCGGTGTTTAGAGGTAAAAACATTCAATTCTCTATTGTCTCTTTGAAACTTATAAATTCACATCACAATCCCCATTTTTGTTTCTCTTCAACAGGGTAACGCCACTACAAAACACTCCTACGGAACATAAGTGTAGGAACATAAGTGTTGCAATACATAATGCCACACATTAACGAAGGAGTGAAGAAAATAATGTCTGATTTGTTTGATAGTGTCACTTTTGCTACTAGTCAGTCCAATCTGAAATTTTCAGAATATTATAATTTTTAGCAATGGACCATTCTTCAAAACTTATATTCTTTTGGTTTTCAAGTGTCCCTGTATATATTTTCTTGCGCTGAAAGAGAACGGAAGTTTGTAGAGGGTAGACTTGTGAAAGTTAATAATTGACTTTTCCTAATTTTCAATTAGGTCGTGCATCAATCAACAGAAAATCAAGAAGCTGGAGCAGTAGAAGCTGAATTTCACGAAGAAGAAAATCAGACAGAAGATGTTGGATTTCAAGAAGGAGACATAGACAACCAACAAGGTGGGGTTGTATAATCTAGATTTCAACCAGAACCAAACATGGAAAACCAACTAGTAATGTTACGTAGAAGGAGCTACCAGGTATTACCATTGGGTTGAAAGTTTAGTAAAATTTTGTGATTTCTTTTATCATATTATCAGTTATATTATGTGTTTAGTTTATGAGTTTGTCTTTTAGGAGACTTCTCTTGCCTAGCTTTTATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTTATTTTGCAGTTTTAGAGGATGGAGTGGTCCATAAAGAGGCGTTTGAAGAGGAGATTTGTGATCCTAGTGAATGTCGTGACACAGAGGCATGGGGTTATGCGTAGAACATATGTTCGAAACCGTGGCGAGTCCTCTTTTTGGGTTCTTAGGAATTTGGATGAAGAAGGGAATGCAATAGAAGCTGAAATTTCCTTTTCCCATCTTTGCTTATTGATTTTAAAATTTTATTGAAATCCAATTTATTTTATAGAAACATATAATTGATACATGACAACTTTTTATTGACCGATTGTGATGTGATTGTTAAGTAAATTTGTTAGTTGGCCTGCTCTGTCCTAGTCTGGCTTACTATTTTGGTATTTTGGAGTCTGTTATTAGTGTAATCACTTTACTATTTTTTTAATATTTTTTAGGTAGCATATTTCTATTACTTATTCTCAACTTTTA

mRNA sequence

ATGAGTATGCAACATAAGCTTGATGATCTATGTAATCAAATGAATCCCGTTAAGGATCAAACTGACTTGGAAGATTCTGAGGCATTTAGGAATCATAAAATCAAATTCCTTAATTGTCGTTGTTGGCTTTGTGATGAGCATCTTGATTTGCTCGTGTCCCTGTATATATTTTCTTGCGCTGAAAGAGAACGGAAGTTTGTAGAGGGTAGACTTGTGAAAGTCGTGCATCAATCAACAGAAAATCAAGAAGCTGGAGCAGTAGAAGCTGAATTTCACGAAGAAGAAAATCAGACAGAAGATGTTGGATTTCAAGAAGGAGACATAGACAACCAACAAGGTGGGGTTGTATAATCTAGATTTCAACCAGAACCAAACATGGAAAACCAACTAGTAATGTTACGTAGAAGGAGCTACCAGTTTTAGAGGATGGAGTGGTCCATAAAGAGGCGTTTGAAGAGGAGATTTGTGATCCTAGTGAATGTCGTGACACAGAGGCATGGGGTTATGCGTAGAACATATGTTCGAAACCGTGGCGAGTCCTCTTTTTGGGTTCTTAGGAATTTGGATGAAGAAGGGAATGCAATAGAAGCTGAAATTTCCTTTTCCCATCTTTGCTTATTGATTTTAAAATTTTATTGAAATCCAATTTATTTTATAGAAACATATAATTGATACATGACAACTTTTTATTGACCGATTGTGATGTGATTGTTAAGTAAATTTGTTAGTTGGCCTGcTCTGTCCTAGTCTGGCTTACTATTTTGGTATTTTGGAGTCTGTTATTAGTGTAATCACTTTACTATTTTTTTAATATTTTTTAGGTAGCATATTTCTATTACTTATTCTCAACTTTTA

Coding sequence (CDS)

ATGAGTATGCAACATAAGCTTGATGATCTATGTAATCAAATGAATCCCGTTAAGGATCAAACTGACTTGGAAGATTCTGAGGCATTTAGGAATCATAAAATCAAATTCCTTAATTGTCGTTGTTGGCTTTGTGATGAGCATCTTGATTTGCTCGTGTCCCTGTATATATTTTCTTGCGCTGAAAGAGAACGGAAGTTTGTAGAGGGTAGACTTGTGAAAGTCGTGCATCAATCAACAGAAAATCAAGAAGCTGGAGCAGTAGAAGCTGAATTTCACGAAGAAGAAAATCAGACAGAAGATGTTGGATTTCAAGAAGGAGACATAGACAACCAACAAGGTGGGGTTGTATAA

Protein sequence

MSMQHKLDDLCNQMNPVKDQTDLEDSEAFRNHKIKFLNCRCWLCDEHLDLLVSLYIFSCAERERKFVEGRLVKVVHQSTENQEAGAVEAEFHEEENQTEDVGFQEGDIDNQQGGVV

Homology

[Close]

BLAST of MELO3C034566.2 vs. NCBI nr
Match: XP_011653583.1 (PREDICTED: uncharacterized protein LOC101212475 isoform X1 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 1.4e-12
Identity = 42/66 (63.64%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 1   MSMQHKLDDLCNQMNPVKDQT------------DLEDSEAFRNHKIKFLNCRCWLCDEHL 55
           +SMQ KLDDLCNQ+NPVKDQ+            DLEDS AF N KIKF +C CWLCDEHL
Sbjct: 126 LSMQQKLDDLCNQVNPVKDQSGTENDMALKKNADLEDSGAFGNDKIKFDDCGCWLCDEHL 185

[Close]

BLAST of MELO3C034566.2 vs. NCBI nr
Match: XP_011653584.1 (PREDICTED: uncharacterized protein LOC101212475 isoform X2 [Cucumis sativus] >KGN54157.1 hypothetical protein Csa_4G290730 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 1.4e-12
Identity = 42/66 (63.64%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 1   MSMQHKLDDLCNQMNPVKDQT------------DLEDSEAFRNHKIKFLNCRCWLCDEHL 55
           +SMQ KLDDLCNQ+NPVKDQ+            DLEDS AF N KIKF +C CWLCDEHL
Sbjct: 126 LSMQQKLDDLCNQVNPVKDQSGTENDMALKKNADLEDSGAFGNDKIKFDDCGCWLCDEHL 185

[Close]

BLAST of MELO3C034566.2 vs. NCBI nr
Match: XP_008449739.1 (PREDICTED: uncharacterized protein LOC103491531 [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 1.6e-11
Identity = 38/60 (63.33%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 1   MSMQHKLDDLCNQMNPVKDQTDLEDSEAFR------NHKIKFLNCRCWLCDEHLDLLVSL 55
           +SMQ KLDDLCNQ+NPVKDQ+  E+  A R      N KIKF++C CWLCDEHLDLL  L
Sbjct: 126 LSMQQKLDDLCNQVNPVKDQSGTENDMALRKNADFGNDKIKFVDCGCWLCDEHLDLLSRL 185

[Close]

BLAST of MELO3C034566.2 vs. NCBI nr
Match: XP_022148707.1 (uncharacterized protein LOC111017303 isoform X2 [Momordica charantia])

HSP 1 Score: 73.2 bits (178), Expect = 6.7e-10
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 1   MSMQHKLDDLCNQMNPVKDQT------------DLEDSEAFRNHKIKFLNCRCWLCDEHL 55
           +SMQ KLDDLC+Q+NPVKD++            DL DS AF + KIKF++C CWLCDEHL
Sbjct: 122 LSMQQKLDDLCDQVNPVKDKSGTEEDMALKKNADLADSGAFGHEKIKFVDCGCWLCDEHL 181

[Close]

BLAST of MELO3C034566.2 vs. NCBI nr
Match: XP_022148706.1 (uncharacterized protein LOC111017303 isoform X1 [Momordica charantia])

HSP 1 Score: 73.2 bits (178), Expect = 6.7e-10
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 1   MSMQHKLDDLCNQMNPVKDQT------------DLEDSEAFRNHKIKFLNCRCWLCDEHL 55
           +SMQ KLDDLC+Q+NPVKD++            DL DS AF + KIKF++C CWLCDEHL
Sbjct: 122 LSMQQKLDDLCDQVNPVKDKSGTEEDMALKKNADLADSGAFGHEKIKFVDCGCWLCDEHL 181

[Close]

BLAST of MELO3C034566.2 vs. TAIR10
Match: AT5G12930.1 (unknown protein)

HSP 1 Score: 52.0 bits (123), Expect = 2.9e-07
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 2   SMQHKLDDLCNQMNPVKDQT---------DLEDS---EAFRNHKIKFLNCRCWLCDEH 48
           SMQ KLDDLC+++N  KDQ+         D   S   E F + +I F++C CWLCD+H
Sbjct: 127 SMQQKLDDLCHELNLAKDQSGAVSKVSDHDYPQSALKEKFGSERINFVDCGCWLCDQH 184

[Close]

BLAST of MELO3C034566.2 vs. TrEMBL
Match: tr|A0A0A0L0N0|A0A0A0L0N0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G290730 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.5e-13
Identity = 42/66 (63.64%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 1   MSMQHKLDDLCNQMNPVKDQT------------DLEDSEAFRNHKIKFLNCRCWLCDEHL 55
           +SMQ KLDDLCNQ+NPVKDQ+            DLEDS AF N KIKF +C CWLCDEHL
Sbjct: 126 LSMQQKLDDLCNQVNPVKDQSGTENDMALKKNADLEDSGAFGNDKIKFDDCGCWLCDEHL 185

[Close]

BLAST of MELO3C034566.2 vs. TrEMBL
Match: tr|A0A1S3BMQ0|A0A1S3BMQ0_CUCME (uncharacterized protein LOC103491531 OS=Cucumis melo OX=3656 GN=LOC103491531 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.0e-11
Identity = 38/60 (63.33%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 1   MSMQHKLDDLCNQMNPVKDQTDLEDSEAFR------NHKIKFLNCRCWLCDEHLDLLVSL 55
           +SMQ KLDDLCNQ+NPVKDQ+  E+  A R      N KIKF++C CWLCDEHLDLL  L
Sbjct: 126 LSMQQKLDDLCNQVNPVKDQSGTENDMALRKNADFGNDKIKFVDCGCWLCDEHLDLLSRL 185

[Close]

BLAST of MELO3C034566.2 vs. TrEMBL
Match: tr|M5VXT8|M5VXT8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G022100 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.2e-08
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 2   SMQHKLDDLCNQMNPVKDQT-----------DLEDSEAFRNHKIKFLNCRCWLCDEHLDL 51
           SMQ KLD LC QMN +KD +           +L+ +E+F +HKIKF++C CWLCD+H DL
Sbjct: 125 SMQQKLDSLCEQMNNIKDHSATVDPSTLENAELQRNESFGSHKIKFVDCGCWLCDQHRDL 184

[Close]

BLAST of MELO3C034566.2 vs. TrEMBL
Match: tr|V4U5B7|V4U5B7_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10014934mg PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.9e-05
Identity = 35/94 (37.23%), Postives = 45/94 (47.87%), Query Frame = 0


Query: 2   SMQHKLDDLCNQMNPVKDQ------------TDLEDSEAFRNHKIKFLNCRCWLCDEHLD 61
           SMQ KLD LC Q+  VKDQ             +   SE F + KI F++C CWLCD+H +
Sbjct: 139 SMQQKLDSLCEQLYYVKDQQGIIANMSLSGKAESAQSETFGSDKINFVDCGCWLCDQHHN 198

Query: 62  LLVSLYIFSCAERERKFVEGRLVKVVHQSTENQE 84
            L      SCA +     E    K++H     QE
Sbjct: 199 QLSGFAQGSCAGKNSSGDEMMPYKMIHAIESEQE 232

[Close]

BLAST of MELO3C034566.2 vs. TrEMBL
Match: tr|A0A2P5EUL3|A0A2P5EUL3_9ROSA (Inactive rhomboid protein OS=Trema orientalis OX=63057 GN=TorRG33x02_150960 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.9e-05
Identity = 28/59 (47.46%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 2   SMQHKLDDLCNQMNPVKDQTDLE----------DSEAFRNHKIKFLNCRCWLCDEHLDL 51
           SMQ KLD+LC Q+N VKD  + E          D+E F   K KF++C CWLCD+H +L
Sbjct: 125 SMQQKLDNLCEQLNNVKDHPETENISLSSIKLPDNEVFGPDKTKFVDCGCWLCDQHHNL 183

The following BLAST results are available for this feature:

BLAST of MELO3C034566.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653583.1	1.4e-12	63.64	PREDICTED: uncharacterized protein LOC101212475 isoform X1 [Cucumis sativus]	[more]
XP_011653584.1	1.4e-12	63.64	PREDICTED: uncharacterized protein LOC101212475 isoform X2 [Cucumis sativus] >KG...	[more]
XP_008449739.1	1.6e-11	63.33	PREDICTED: uncharacterized protein LOC103491531 [Cucumis melo]	[more]
XP_022148707.1	6.7e-10	54.55	uncharacterized protein LOC111017303 isoform X2 [Momordica charantia]	[more]
XP_022148706.1	6.7e-10	54.55	uncharacterized protein LOC111017303 isoform X1 [Momordica charantia]	[more]

BLAST of MELO3C034566.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G12930.1	2.9e-07	44.83	unknown protein	[more]

BLAST of MELO3C034566.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C034566.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L0N0\|A0A0A0L0N0_CUCSA	9.5e-13	63.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G290730 PE=4 SV=1	[more]
tr\|A0A1S3BMQ0\|A0A1S3BMQ0_CUCME	1.0e-11	63.33	uncharacterized protein LOC103491531 OS=Cucumis melo OX=3656 GN=LOC103491531 PE=...	[more]
tr\|M5VXT8\|M5VXT8_PRUPE	9.2e-08	50.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G022100 PE=4 SV=1	[more]
tr\|V4U5B7\|V4U5B7_9ROSI	1.9e-05	37.23	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10014934mg PE=4 ...	[more]
tr\|A0A2P5EUL3\|A0A2P5EUL3_9ROSA	1.9e-05	47.46	Inactive rhomboid protein OS=Trema orientalis OX=63057 GN=TorRG33x02_150960 PE=4...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034566.2.1	MELO3C034566.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..116

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C034566.2	Cucumber (Gy14) v2	cgybmedB081
MELO3C034566.2	Cucurbita maxima (Rimu)	cmamedB572
MELO3C034566.2	Cucurbita maxima (Rimu)	cmamedB629
MELO3C034566.2	Cucurbita moschata (Rifu)	cmomedB562
MELO3C034566.2	Cucurbita moschata (Rifu)	cmomedB618
MELO3C034566.2	Cucurbita pepo (Zucchini)	cpemedB305
MELO3C034566.2	Cucurbita pepo (Zucchini)	cpemedB312
MELO3C034566.2	Cucurbita pepo (Zucchini)	cpemedB787
MELO3C034566.2	Bottle gourd (USVL1VR-Ls)	lsimedB058
MELO3C034566.2	Watermelon (Charleston Gray)	medwcgB089
MELO3C034566.2	Watermelon (97103) v1	medwmB118
MELO3C034566.2	Watermelon (97103) v1	medwmB128
MELO3C034566.2	Silver-seed gourd	carmedB0726
MELO3C034566.2	Silver-seed gourd	carmedB1039
MELO3C034566.2	Cucumber (Chinese Long) v3	cucmedB097
MELO3C034566.2	Watermelon (97103) v2	medwmbB088
MELO3C034566.2	Wax gourd	medwgoB134