MELO3C034485.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C034485.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	UBN2_3 domain-containing protein
Location	chr10 : 21823464 .. 21823820 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACCACAGATCGGCAAGCCTCTACTATATACAGCCACATCAAAAGATTTGTGGGATACAACTCAGACCCTTTACTCAAAACGACAGAATGCCTCTCGGTTGTATACACTGCAAAAACAGGTCCATAATTGCAAACAAGGGACCCTAGACGTGACTACCTATTTTAACAAGCTCTCTCTCCTCTGGCAAGAGATGGATTTGTGCAGAGAGATAGTTTGGGACACACCAAATGACGGTACACAATATACTAAACTTGAAGAGGCTTACCGTGTTTATGACTTCCTTGCAGGACTTAATCCCAAATTGATACTGTTTATGGTCTTATACTCGGACAAAGACCTCTTCCCTCCCTAA

mRNA sequence

ATGAAACCACAGATCGGCAAGCCTCTACTATATACAGCCACATCAAAAGATTTGTGGGATACAACTCAGACCCTTTACTCAAAACGACAGAATGCCTCTCGGTTGTATACACTGCAAAAACAGGTCCATAATTGCAAACAAGGGACCCTAGACGTGACTACCTATTTTAACAAGCTCTCTCTCCTCTGGCAAGAGATGGATTTGTGCAGAGAGATAGTTTGGGACACACCAAATGACGGTACACAATATACTAAACTTGAAGAGGCTTACCGTGTTTATGACTTCCTTGCAGGACTTAATCCCAAATTGATACTGTTTATGGTCTTATACTCGGACAAAGACCTCTTCCCTCCCTAA

Coding sequence (CDS)

ATGAAACCACAGATCGGCAAGCCTCTACTATATACAGCCACATCAAAAGATTTGTGGGATACAACTCAGACCCTTTACTCAAAACGACAGAATGCCTCTCGGTTGTATACACTGCAAAAACAGGTCCATAATTGCAAACAAGGGACCCTAGACGTGACTACCTATTTTAACAAGCTCTCTCTCCTCTGGCAAGAGATGGATTTGTGCAGAGAGATAGTTTGGGACACACCAAATGACGGTACACAATATACTAAACTTGAAGAGGCTTACCGTGTTTATGACTTCCTTGCAGGACTTAATCCCAAATTGATACTGTTTATGGTCTTATACTCGGACAAAGACCTCTTCCCTCCCTAA

Protein sequence

MKPQIGKPLLYTATSKDLWDTTQTLYSKRQNASRLYTLQKQVHNCKQGTLDVTTYFNKLSLLWQEMDLCREIVWDTPNDGTQYTKLEEAYRVYDFLAGLNPKLILFMVLYSDKDLFPP

Homology

[Close]

BLAST of MELO3C034485.2 vs. NCBI nr
Match: XP_010651194.1 (PREDICTED: uncharacterized protein LOC104879574 isoform X2 [Vitis vinifera])

HSP 1 Score: 110.9 bits (276), Expect = 2.9e-21
Identity = 49/103 (47.57%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 1   MKPQIGKPLLYTATSKDLWDTTQTLYSKRQNASRLYTLQKQVHNCKQGTLDVTTYFNKLS 60
           M+P IGKP L+  T+KD+W+  + +YS  +N+S+++ L+ ++   +QG  +VTTY+N++ 
Sbjct: 106 MEPAIGKPHLFLPTAKDVWEAVRDMYSDLENSSQIFDLKSKLWQSRQGDREVTTYYNQMV 165

Query: 61  LLWQEMDLCREIVWDTPNDGTQYTKLEEAYRVYDFLAGLNPKL 104
            LWQE+DLC E  WD PND  ++ K EE  RVY FLAGLN  L
Sbjct: 166 TLWQELDLCYEDEWDCPNDSVRHKKREENDRVYVFLAGLNHNL 208

[Close]

BLAST of MELO3C034485.2 vs. NCBI nr
Match: XP_019076066.1 (PREDICTED: uncharacterized protein LOC104879574 isoform X1 [Vitis vinifera])

HSP 1 Score: 110.9 bits (276), Expect = 2.9e-21
Identity = 49/103 (47.57%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 1   MKPQIGKPLLYTATSKDLWDTTQTLYSKRQNASRLYTLQKQVHNCKQGTLDVTTYFNKLS 60
           M+P IGKP L+  T+KD+W+  + +YS  +N+S+++ L+ ++   +QG  +VTTY+N++ 
Sbjct: 106 MEPAIGKPHLFLPTAKDVWEAVRDMYSDLENSSQIFDLKSKLWQSRQGDREVTTYYNQMV 165

Query: 61  LLWQEMDLCREIVWDTPNDGTQYTKLEEAYRVYDFLAGLNPKL 104
            LWQE+DLC E  WD PND  ++ K EE  RVY FLAGLN  L
Sbjct: 166 TLWQELDLCYEDEWDCPNDSVRHKKREENDRVYVFLAGLNHNL 208

[Close]

BLAST of MELO3C034485.2 vs. NCBI nr
Match: XP_010664350.1 (PREDICTED: uncharacterized protein LOC104882491 [Vitis vinifera])

HSP 1 Score: 108.6 bits (270), Expect = 1.5e-20
Identity = 48/103 (46.60%), Postives = 71/103 (68.93%), Query Frame = 0


Query: 1   MKPQIGKPLLYTATSKDLWDTTQTLYSKRQNASRLYTLQKQVHNCKQGTLDVTTYFNKLS 60
           M+P IGKP L+  T+KD+W+  + +YS  +N+S+++ L+ ++   +QG  +VTTY+N++ 
Sbjct: 106 MEPAIGKPHLFLPTAKDVWEAVRDMYSDLENSSQIFDLKSKLWQSRQGDREVTTYYNQMV 165

Query: 61  LLWQEMDLCREIVWDTPNDGTQYTKLEEAYRVYDFLAGLNPKL 104
            LWQE+DLC E  WD PND  ++ K EE  RVY FLA LN  L
Sbjct: 166 TLWQELDLCYEDEWDCPNDSVRHKKREENDRVYVFLAALNHNL 208

[Close]

BLAST of MELO3C034485.2 vs. NCBI nr
Match: XP_024441641.1 (uncharacterized protein LOC112324187 [Populus trichocarpa])

HSP 1 Score: 108.6 bits (270), Expect = 1.5e-20
Identity = 48/103 (46.60%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 1   MKPQIGKPLLYTATSKDLWDTTQTLYSKRQNASRLYTLQKQVHNCKQGTLDVTTYFNKLS 60
           M+P IGKP L+  T+KD+W+  + +YS  +N+S+++ L+ ++   +QG  +VTTY+N++ 
Sbjct: 1   MEPAIGKPHLFLPTAKDVWEAVRDMYSDLENSSQIFDLKSKLWRSRQGDREVTTYYNQMV 60

Query: 61  LLWQEMDLCREIVWDTPNDGTQYTKLEEAYRVYDFLAGLNPKL 104
            LWQE+DLC E  WD PND  ++ K EE  RVY FLAGL+  L
Sbjct: 61  PLWQELDLCYEDEWDCPNDSVRHRKREENDRVYVFLAGLHQNL 103

[Close]

BLAST of MELO3C034485.2 vs. NCBI nr
Match: CAN79872.1 (hypothetical protein VITISV_017186 [Vitis vinifera])

HSP 1 Score: 107.5 bits (267), Expect = 3.2e-20
Identity = 48/103 (46.60%), Postives = 71/103 (68.93%), Query Frame = 0


Query: 1   MKPQIGKPLLYTATSKDLWDTTQTLYSKRQNASRLYTLQKQVHNCKQGTLDVTTYFNKLS 60
           M+P IGKP L+  T+KD+W+  + +YS  +N+S+++ L+ ++   +Q   +VTTY+N++ 
Sbjct: 1   MEPAIGKPHLFLPTAKDVWEAVRDMYSDLENSSQIFDLKSKLWQSRQRDREVTTYYNQMV 60

Query: 61  LLWQEMDLCREIVWDTPNDGTQYTKLEEAYRVYDFLAGLNPKL 104
            LWQE+DLC E  WD PND  ++ K EE  RVY FLAGLN  L
Sbjct: 61  TLWQELDLCYEDEWDYPNDSVRHKKREENDRVYVFLAGLNHNL 103

[Close]

BLAST of MELO3C034485.2 vs. TrEMBL
Match: tr|A5CAQ8|A5CAQ8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_017186 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.1e-20
Identity = 48/103 (46.60%), Postives = 71/103 (68.93%), Query Frame = 0


Query: 1   MKPQIGKPLLYTATSKDLWDTTQTLYSKRQNASRLYTLQKQVHNCKQGTLDVTTYFNKLS 60
           M+P IGKP L+  T+KD+W+  + +YS  +N+S+++ L+ ++   +Q   +VTTY+N++ 
Sbjct: 1   MEPAIGKPHLFLPTAKDVWEAVRDMYSDLENSSQIFDLKSKLWQSRQRDREVTTYYNQMV 60

Query: 61  LLWQEMDLCREIVWDTPNDGTQYTKLEEAYRVYDFLAGLNPKL 104
            LWQE+DLC E  WD PND  ++ K EE  RVY FLAGLN  L
Sbjct: 61  TLWQELDLCYEDEWDYPNDSVRHKKREENDRVYVFLAGLNHNL 103

[Close]

BLAST of MELO3C034485.2 vs. TrEMBL
Match: tr|A0A1U8Q3P1|A0A1U8Q3P1_NELNU (uncharacterized protein LOC109114430 OS=Nelumbo nucifera OX=4432 GN=LOC109114430 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-19
Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 1   MKPQIGKPLLYTATSKDLWDTTQTLYSKRQNASRLYTLQKQVHNCKQGTLDVTTYFNKLS 60
           M+PQI +  L+  ++K++WD+    YS++ N SR Y L+  V N +QG   + TYF+ L 
Sbjct: 1   MQPQISQHYLWMNSAKEIWDSVAETYSQKLNVSRAYKLRSDVKNLRQGEKSLATYFSTLK 60

Query: 61  LLWQEMDLCREIVWDTPNDGTQYTKLEEAYRVYDFLAGLNPK 103
            LWQE+DL   + W+TPND   Y K  E  RV+DFL GLNP+
Sbjct: 61  SLWQEIDLIEAVTWNTPNDAETYRKFVERNRVFDFLTGLNPE 102

[Close]

BLAST of MELO3C034485.2 vs. TrEMBL
Match: tr|F6HK68|F6HK68_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0035g00420 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-19
Identity = 47/103 (45.63%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 1   MKPQIGKPLLYTATSKDLWDTTQTLYSKRQNASRLYTLQKQVHNCKQGTLDVTTYFNKLS 60
           M+P IGK  L+  T+KD+W+  + +YS  +N+S+++ L+ ++   +QG  +VTTY+N++ 
Sbjct: 632 MEPAIGKSHLFLPTAKDVWEAVRDMYSDLENSSQIFYLKSKLWQSRQGDREVTTYYNQMV 691

Query: 61  LLWQEMDLCREIVWDTPNDGTQYTKLEEAYRVYDFLAGLNPKL 104
            LWQE+DLC    WD PND  ++ K EE  RVY FLAGLN  L
Sbjct: 692 TLWQELDLCYVDEWDCPNDSVRHKKREENDRVYVFLAGLNHNL 734

[Close]

BLAST of MELO3C034485.2 vs. TrEMBL
Match: tr|A5AYJ3|A5AYJ3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_041073 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.4e-19
Identity = 46/99 (46.46%), Postives = 68/99 (68.69%), Query Frame = 0


Query: 5   IGKPLLYTATSKDLWDTTQTLYSKRQNASRLYTLQKQVHNCKQGTLDVTTYFNKLSLLWQ 64
           IGKP L+  T+KD+W+  + +YS  +N+S+++ L+ ++   +QG  +VTTY+N++  LWQ
Sbjct: 94  IGKPHLFLPTAKDVWEAVRDMYSDLENSSQIFDLKSKLWQSRQGDREVTTYYNQMVTLWQ 153

Query: 65  EMDLCREIVWDTPNDGTQYTKLEEAYRVYDFLAGLNPKL 104
           E+DLC E  WD PND  ++ K EE  RVY FLA LN  L
Sbjct: 154 ELDLCYEDEWDCPNDSVRHKKREENDRVYVFLAALNHNL 192

[Close]

BLAST of MELO3C034485.2 vs. TrEMBL
Match: tr|A5AZK9|A5AZK9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_003938 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-18
Identity = 42/101 (41.58%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 1   MKPQIGKPLLYTATSKDLWDTTQTLYSKRQNASRLYTLQKQVHNCKQGTLDVTTYFNKLS 60
           ++P+IGKP L+ +T+KD+WD     YSK+ NA+R++ L+  +H  KQ  L+V +YFNKL 
Sbjct: 212 IQPEIGKPFLFLSTAKDIWDAVVKAYSKKGNATRIFELKGAIHETKQQGLNVLSYFNKLK 271

Query: 61  LLWQEMDLCREIVWDTPNDGTQYTKLEEAYRVYDFLAGLNP 102
           +LW+E+D+ +    ++P D  +  ++ E  R+++FLAGL P
Sbjct: 272 ILWEELDVHQHWEIESPRDAAKLVEIPERERIFEFLAGLRP 312

The following BLAST results are available for this feature:

BLAST of MELO3C034485.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_010651194.1	2.9e-21	47.57	PREDICTED: uncharacterized protein LOC104879574 isoform X2 [Vitis vinifera]	[more]
XP_019076066.1	2.9e-21	47.57	PREDICTED: uncharacterized protein LOC104879574 isoform X1 [Vitis vinifera]	[more]
XP_010664350.1	1.5e-20	46.60	PREDICTED: uncharacterized protein LOC104882491 [Vitis vinifera]	[more]
XP_024441641.1	1.5e-20	46.60	uncharacterized protein LOC112324187 [Populus trichocarpa]	[more]
CAN79872.1	3.2e-20	46.60	hypothetical protein VITISV_017186 [Vitis vinifera]	[more]

BLAST of MELO3C034485.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C034485.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C034485.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A5CAQ8\|A5CAQ8_VITVI	2.1e-20	46.60	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_017186 PE=4 SV=1	[more]
tr\|A0A1U8Q3P1\|A0A1U8Q3P1_NELNU	1.1e-19	45.10	uncharacterized protein LOC109114430 OS=Nelumbo nucifera OX=4432 GN=LOC109114430...	[more]
tr\|F6HK68\|F6HK68_VITVI	1.4e-19	45.63	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0035g00420 PE=4 SV=...	[more]
tr\|A5AYJ3\|A5AYJ3_VITVI	2.4e-19	46.46	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_041073 PE=4 SV=1	[more]
tr\|A5AZK9\|A5AZK9_VITVI	1.5e-18	41.58	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_003938 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005162	Retrotrans_gag_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034485.2.1	MELO3C034485.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 17..101 e-value: 8.9E-6 score: 25.8
None	No IPR available	PANTHER	PTHR37610:SF3	SUBFAMILY NOT NAMED	coord: 1..100
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 1..100

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C034485.2	Cucumber (Gy14) v2	cgybmedB314
MELO3C034485.2	Cucumber (Gy14) v1	cgymedB270
MELO3C034485.2	Cucurbita maxima (Rimu)	cmamedB729
MELO3C034485.2	Cucurbita maxima (Rimu)	cmamedB732
MELO3C034485.2	Cucurbita moschata (Rifu)	cmomedB724
MELO3C034485.2	Cucurbita moschata (Rifu)	cmomedB726
MELO3C034485.2	Cucurbita pepo (Zucchini)	cpemedB427
MELO3C034485.2	Cucurbita pepo (Zucchini)	cpemedB428
MELO3C034485.2	Wild cucumber (PI 183967)	cpimedB355
MELO3C034485.2	Cucumber (Chinese Long) v2	cumedB352
MELO3C034485.2	Bottle gourd (USVL1VR-Ls)	lsimedB301
MELO3C034485.2	Watermelon (Charleston Gray)	medwcgB068
MELO3C034485.2	Watermelon (97103) v1	medwmB055
MELO3C034485.2	Watermelon (97103) v1	medwmB059
MELO3C034485.2	Silver-seed gourd	carmedB0186
MELO3C034485.2	Silver-seed gourd	carmedB0667
MELO3C034485.2	Cucumber (Chinese Long) v3	cucmedB365
MELO3C034485.2	Watermelon (97103) v2	medwmbB065
MELO3C034485.2	Wax gourd	medwgoB075