MELO3C034469.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C034469.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionHydroxyproline-rich glycoprotein family protein isoform 1
Locationchr10 : 20004157 .. 20005781 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAATAACGTTCACTTGAATGTTGATGCCTTTCATGGAGACAAATATTCTGGTGGAATTCATGACAGCACCCACATTGTTCTGTGGAAATGGAAGGAAGGAGAAAACCAACAATGGAAGATTGTACCCTACTGTAAGTTCTTTCTCGTTTATACTATGGTTAGACATCATTCTCTTTTGTTCATCTTGCTGTTAGACTCTTGATTTCTAAATCTCTATCAAATCAATGGATTCTATTTTTCAATTTAAGATTTTCGATTCTAAATTTTTTATTTCCTTCTTCTTAATCTTTTAATACCCTGTTAAACATGGATTTCATGTTGAAAATGATAGATCAAAGGATTAGGGCAAGAGGTGAAGTTTTTTAGTTTAGAGAGTTGCTGAAGTAAATGAGCTATTTTCATTCTCTTTTTATTTCGTGTCTGTGTGTCTAAATTTTCATGATGAAATAAGACTTAATTCTTTGTTACTGCTAAATGCGGAGAGTTTATTTCACTCCAAGGAATGGAACTCTGCTTGAACTATCTGAGCTTGAGCCTCAAGGTAAAAAGTCACGAGGATGAGTCGAAAAAACAAAGACTTAGCTTTCAAAGATAATTTTCCCTTTCAACTAGCATTTGAGTGAAGAGAAATCTTATATTTTTTAACTTTTCTATTGAAAATGAATAACAAATGGGTAGATCATGGTGTTGCAGCAATAGCCGATGTTGCTTGTTTCAGAACAGAAATTGTGTCTACAATAAGGTTCTTAATTTTTATGTCTATTTATGTGTGTTTCTTTAATTTTCATACATCTAAATAAAAGCTTCATAATGAACACAACTTTTGTCTAGTTGTCAATGGTTGTGGATAAGTTACACGACAAAACTTACTATAATATTGTGACTTACGCTTTTGAATTTACTCATAGTTCAAACATGATATTAGAGTAAGAGGTGCTCTAGTAAACAAACCTCAACAAAATTGTTTTATTTGTTGGAGAATAATCTATGTTAAACAAACCTCAACTAATGTAGATCTTGAACTGATCTAAGAAAGAAAAGAAAAGAAGGGCTAATAGTTCATTTTCAAAATGTTGTTTATCTAATTAGAAAGATAAACTATTTCTTTTCCATTTTGAATTTATAGATTATCAGATTAAGGTAAAAAAAATTATGAAAATGCAGCTCTGTGGGAGATCTCTATGAATATGATAGGAACTCAAAGCCTCTGTGGAATAAGCATGTATGGAAAGATAGAGTAGTACAAGATCTTCGATTGATTCCATCGCGGGGTTGCTATATACATAGCTTGAATGGAGATCCTTCCATATCCCTCTTTCTTTTAACTAAGGTACTAAATAGAGAGAAATTCACCTTGCTATTGAGTTATTATGAACCTAAAAGGTTTCTGGATTTCTTGTATTAATCTTCATGTTCTAGATTTTCAGGGTCACACGATGAATGATACCATAGTTTTGAGGGCCTTAAATAGATTATTGATGTCGTGAATTGCAGACAGATAGTGATGATGATGGATTCCTAACCTTGAAAGATATGATTGAGAACCCATTTGTGTTCTATAGCTCTGTTTTTACTGAAGATGAGATGGGTTATTATCCACGCCACGATGAGTTTTGTTAG

mRNA sequence

ATGGTGAATAACGTTCACTTGAATGTTGATGCCTTTCATGGAGACAAATATTCTGGTGGAATTCATGACAGCACCCACATTGTTCTGTGGAAATGGAAGGAAGGAGAAAACCAACAATGGAAGATTGTACCCTACTGTAAGTTCTTTCTCGTTTATACTATGATTATCAGATTAAGCTCTGTGGGAGATCTCTATGAATATGATAGGAACTCAAAGCCTCTGTGGAATAAGCATGTATGGAAAGATAGAGTAGTACAAGATCTTCGATTGATTCCATCGCGGGGTTGCTATATACATAGCTTGAATGGAGATCCTTCCATATCCCTCTTTCTTTTAACTAAGACAGATAGTGATGATGATGGATTCCTAACCTTGAAAGATATGATTGAGAACCCATTTGTGTTCTATAGCTCTGTTTTTACTGAAGATGAGATGGGTTATTATCCACGCCACGATGAGTTTTGTTAG

Coding sequence (CDS)

ATGGTGAATAACGTTCACTTGAATGTTGATGCCTTTCATGGAGACAAATATTCTGGTGGAATTCATGACAGCACCCACATTGTTCTGTGGAAATGGAAGGAAGGAGAAAACCAACAATGGAAGATTGTACCCTACTGTAAGTTCTTTCTCGTTTATACTATGATTATCAGATTAAGCTCTGTGGGAGATCTCTATGAATATGATAGGAACTCAAAGCCTCTGTGGAATAAGCATGTATGGAAAGATAGAGTAGTACAAGATCTTCGATTGATTCCATCGCGGGGTTGCTATATACATAGCTTGAATGGAGATCCTTCCATATCCCTCTTTCTTTTAACTAAGACAGATAGTGATGATGATGGATTCCTAACCTTGAAAGATATGATTGAGAACCCATTTGTGTTCTATAGCTCTGTTTTTACTGAAGATGAGATGGGTTATTATCCACGCCACGATGAGTTTTGTTAG

Protein sequence

MVNNVHLNVDAFHGDKYSGGIHDSTHIVLWKWKEGENQQWKIVPYCKFFLVYTMIIRLSSVGDLYEYDRNSKPLWNKHVWKDRVVQDLRLIPSRGCYIHSLNGDPSISLFLLTKTDSDDDGFLTLKDMIENPFVFYSSVFTEDEMGYYPRHDEFC
BLAST of MELO3C034469.2 vs. NCBI nr
Match: XP_008450399.1 (PREDICTED: uncharacterized protein LOC103492016 isoform X1 [Cucumis melo])

HSP 1 Score: 116.7 bits (291), Expect = 7.0e-23
Identity = 54/65 (83.08%), Postives = 57/65 (87.69%), Query Frame = 0

Query: 50  LVYTMIIRLSSVGDLYEYDRNSKPLWNKHVWKDRVVQDLRLIPSRGCYIHSLNGDPSISL 109
           +VYT    +SSVGDLYEYDRNSKPLW KHVWKDR  +DLRLIPSRGCYIHSLNGD SISL
Sbjct: 269 IVYT----ISSVGDLYEYDRNSKPLWKKHVWKDRAARDLRLIPSRGCYIHSLNGDHSISL 328

Query: 110 FLLTK 115
           FLLTK
Sbjct: 329 FLLTK 329

BLAST of MELO3C034469.2 vs. NCBI nr
Match: XP_008450400.1 (PREDICTED: uncharacterized protein LOC103492016 isoform X2 [Cucumis melo])

HSP 1 Score: 116.7 bits (291), Expect = 7.0e-23
Identity = 54/65 (83.08%), Postives = 57/65 (87.69%), Query Frame = 0

Query: 50  LVYTMIIRLSSVGDLYEYDRNSKPLWNKHVWKDRVVQDLRLIPSRGCYIHSLNGDPSISL 109
           +VYT    +SSVGDLYEYDRNSKPLW KHVWKDR  +DLRLIPSRGCYIHSLNGD SISL
Sbjct: 269 IVYT----ISSVGDLYEYDRNSKPLWKKHVWKDRAARDLRLIPSRGCYIHSLNGDHSISL 328

Query: 110 FLLTK 115
           FLLTK
Sbjct: 329 FLLTK 329

BLAST of MELO3C034469.2 vs. NCBI nr
Match: XP_008450401.1 (PREDICTED: uncharacterized protein LOC103492016 isoform X3 [Cucumis melo])

HSP 1 Score: 116.7 bits (291), Expect = 7.0e-23
Identity = 54/65 (83.08%), Postives = 57/65 (87.69%), Query Frame = 0

Query: 50  LVYTMIIRLSSVGDLYEYDRNSKPLWNKHVWKDRVVQDLRLIPSRGCYIHSLNGDPSISL 109
           +VYT    +SSVGDLYEYDRNSKPLW KHVWKDR  +DLRLIPSRGCYIHSLNGD SISL
Sbjct: 267 IVYT----ISSVGDLYEYDRNSKPLWKKHVWKDRAARDLRLIPSRGCYIHSLNGDHSISL 326

Query: 110 FLLTK 115
           FLLTK
Sbjct: 327 FLLTK 327

BLAST of MELO3C034469.2 vs. NCBI nr
Match: XP_011660143.1 (PREDICTED: uncharacterized protein LOC101214470 isoform X2 [Cucumis sativus] >KGN66503.1 hypothetical protein Csa_1G615710 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 4.6e-22
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0

Query: 50  LVYTMIIRLSSVGDLYEYDRNSKPLWNKHVWKDRVVQDLRLIPSRGCYIHSLNGDPSISL 109
           +VYT    +SSVGDLYEYDRNSKPLW KHVWKDR  +DLRLIPS GCYIHSLNGD SISL
Sbjct: 269 IVYT----ISSVGDLYEYDRNSKPLWKKHVWKDRAARDLRLIPSPGCYIHSLNGDHSISL 328

Query: 110 FLLTK 115
           FLLTK
Sbjct: 329 FLLTK 329

BLAST of MELO3C034469.2 vs. NCBI nr
Match: XP_011660142.1 (PREDICTED: uncharacterized protein LOC101214470 isoform X1 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 4.6e-22
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0

Query: 50  LVYTMIIRLSSVGDLYEYDRNSKPLWNKHVWKDRVVQDLRLIPSRGCYIHSLNGDPSISL 109
           +VYT    +SSVGDLYEYDRNSKPLW KHVWKDR  +DLRLIPS GCYIHSLNGD SISL
Sbjct: 269 IVYT----ISSVGDLYEYDRNSKPLWKKHVWKDRAARDLRLIPSPGCYIHSLNGDHSISL 328

Query: 110 FLLTK 115
           FLLTK
Sbjct: 329 FLLTK 329

BLAST of MELO3C034469.2 vs. TAIR10
Match: AT2G39050.1 (hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 72.4 bits (176), Expect = 2.8e-13
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 0

Query: 1   MVNNVHLNVDAFHGDKYSGGIHDSTHIVLWKWKEGENQQWKIVPY 46
           MVNN  LNVDA+HGD  SGG+ D T IVLW W +G+NQ WKI P+
Sbjct: 273 MVNNTRLNVDAYHGDSKSGGVRDGTTIVLWDWNKGDNQLWKIFPF 317

BLAST of MELO3C034469.2 vs. TAIR10
Match: AT5G08580.1 (Calcium-binding EF hand family protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.9e-06
Identity = 23/46 (50.00%), Postives = 34/46 (73.91%), Query Frame = 0

Query: 110 FLLTKTDSDDDGFLTLKDMIENPFVFYSSVFTEDEM-GYYPRHDEF 155
           +++++ DSD D  LTL +MIE+P+VFYS++F ED+    Y  HDEF
Sbjct: 345 YIISQADSDKDRRLTLAEMIEHPYVFYSAIFDEDDTDDDYGFHDEF 390

BLAST of MELO3C034469.2 vs. Swiss-Prot
Match: sp|Q6Z4N4|40G3_ORYSJ (Ricin B-like lectin R40G3 OS=Oryza sativa subsp. japonica OX=39947 GN=R40G3 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.8e-15
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 0

Query: 1   MVNNVHLNVDAFHGDKYSGGIHDSTHIVLWKWKEGENQQWKIVPY 46
           MVNN++LN DAFHGDKY GG+ D T IVLWKW EG+NQ+WKI PY
Sbjct: 159 MVNNIYLNFDAFHGDKYHGGVRDGTDIVLWKWCEGDNQRWKIQPY 203

BLAST of MELO3C034469.2 vs. Swiss-Prot
Match: sp|Q6Z4N6|40G2_ORYSJ (Ricin B-like lectin R40G2 OS=Oryza sativa subsp. japonica OX=39947 GN=R40G2 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 8.2e-15
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 0

Query: 1   MVNNVHLNVDAFHGDKYSGGIHDSTHIVLWKWKEGENQQWKIVPY 46
           MVNN++LN DAFHGDK  GGIHD T IVLWKW EG+NQ+WKI+P+
Sbjct: 299 MVNNIYLNFDAFHGDKDHGGIHDGTEIVLWKWCEGDNQRWKILPW 343

BLAST of MELO3C034469.2 vs. Swiss-Prot
Match: sp|Q10M12|40C1_ORYSJ (Ricin B-like lectin R40C1 OS=Oryza sativa subsp. japonica OX=39947 GN=R40C1 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-12
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 0

Query: 1   MVNNVHLNVDAFHGDKYSGGIHDSTHIVLWKWKEGENQQWKIVPY 46
           M+NN+ LN DAFHGDK  GG+HD T IVLW+W +G+NQ WKI+P+
Sbjct: 135 MLNNIRLNFDAFHGDKDHGGVHDGTTIVLWEWAKGDNQCWKILPW 179

BLAST of MELO3C034469.2 vs. Swiss-Prot
Match: sp|Q945P1|EULS3_ARATH (Ricin B-like lectin EULS3 OS=Arabidopsis thaliana OX=3702 GN=EULS3 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.0e-12
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 0

Query: 1   MVNNVHLNVDAFHGDKYSGGIHDSTHIVLWKWKEGENQQWKIVPY 46
           MVNN  LNVDA+HGD  SGG+ D T IVLW W +G+NQ WKI P+
Sbjct: 273 MVNNTRLNVDAYHGDSKSGGVRDGTTIVLWDWNKGDNQLWKIFPF 317

BLAST of MELO3C034469.2 vs. TrEMBL
Match: tr|A0A1S3BP44|A0A1S3BP44_CUCME (uncharacterized protein LOC103492016 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492016 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.6e-23
Identity = 54/65 (83.08%), Postives = 57/65 (87.69%), Query Frame = 0

Query: 50  LVYTMIIRLSSVGDLYEYDRNSKPLWNKHVWKDRVVQDLRLIPSRGCYIHSLNGDPSISL 109
           +VYT    +SSVGDLYEYDRNSKPLW KHVWKDR  +DLRLIPSRGCYIHSLNGD SISL
Sbjct: 269 IVYT----ISSVGDLYEYDRNSKPLWKKHVWKDRAARDLRLIPSRGCYIHSLNGDHSISL 328

Query: 110 FLLTK 115
           FLLTK
Sbjct: 329 FLLTK 329

BLAST of MELO3C034469.2 vs. TrEMBL
Match: tr|A0A1S3BPT4|A0A1S3BPT4_CUCME (uncharacterized protein LOC103492016 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492016 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.6e-23
Identity = 54/65 (83.08%), Postives = 57/65 (87.69%), Query Frame = 0

Query: 50  LVYTMIIRLSSVGDLYEYDRNSKPLWNKHVWKDRVVQDLRLIPSRGCYIHSLNGDPSISL 109
           +VYT    +SSVGDLYEYDRNSKPLW KHVWKDR  +DLRLIPSRGCYIHSLNGD SISL
Sbjct: 269 IVYT----ISSVGDLYEYDRNSKPLWKKHVWKDRAARDLRLIPSRGCYIHSLNGDHSISL 328

Query: 110 FLLTK 115
           FLLTK
Sbjct: 329 FLLTK 329

BLAST of MELO3C034469.2 vs. TrEMBL
Match: tr|A0A1S3BQ58|A0A1S3BQ58_CUCME (uncharacterized protein LOC103492016 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103492016 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.6e-23
Identity = 54/65 (83.08%), Postives = 57/65 (87.69%), Query Frame = 0

Query: 50  LVYTMIIRLSSVGDLYEYDRNSKPLWNKHVWKDRVVQDLRLIPSRGCYIHSLNGDPSISL 109
           +VYT    +SSVGDLYEYDRNSKPLW KHVWKDR  +DLRLIPSRGCYIHSLNGD SISL
Sbjct: 267 IVYT----ISSVGDLYEYDRNSKPLWKKHVWKDRAARDLRLIPSRGCYIHSLNGDHSISL 326

Query: 110 FLLTK 115
           FLLTK
Sbjct: 327 FLLTK 327

BLAST of MELO3C034469.2 vs. TrEMBL
Match: tr|A0A0A0LXP1|A0A0A0LXP1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G615710 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.0e-22
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0

Query: 50  LVYTMIIRLSSVGDLYEYDRNSKPLWNKHVWKDRVVQDLRLIPSRGCYIHSLNGDPSISL 109
           +VYT    +SSVGDLYEYDRNSKPLW KHVWKDR  +DLRLIPS GCYIHSLNGD SISL
Sbjct: 269 IVYT----ISSVGDLYEYDRNSKPLWKKHVWKDRAARDLRLIPSPGCYIHSLNGDHSISL 328

Query: 110 FLLTK 115
           FLLTK
Sbjct: 329 FLLTK 329

BLAST of MELO3C034469.2 vs. TrEMBL
Match: tr|A0A1S3B4K8|A0A1S3B4K8_CUCME (extensin OS=Cucumis melo OX=3656 GN=LOC103485969 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.0e-18
Identity = 43/45 (95.56%), Postives = 43/45 (95.56%), Query Frame = 0

Query: 1   MVNNVHLNVDAFHGDKYSGGIHDSTHIVLWKWKEGENQQWKIVPY 46
           MVNNVHLNVDAFHGDKYSGGIHD THIVLWKWKEGENQ WKIVPY
Sbjct: 222 MVNNVHLNVDAFHGDKYSGGIHDGTHIVLWKWKEGENQLWKIVPY 266

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008450399.17.0e-2383.08PREDICTED: uncharacterized protein LOC103492016 isoform X1 [Cucumis melo][more]
XP_008450400.17.0e-2383.08PREDICTED: uncharacterized protein LOC103492016 isoform X2 [Cucumis melo][more]
XP_008450401.17.0e-2383.08PREDICTED: uncharacterized protein LOC103492016 isoform X3 [Cucumis melo][more]
XP_011660143.14.6e-2281.54PREDICTED: uncharacterized protein LOC101214470 isoform X2 [Cucumis sativus] >KG... [more]
XP_011660142.14.6e-2281.54PREDICTED: uncharacterized protein LOC101214470 isoform X1 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
AT2G39050.12.8e-1364.44hydroxyproline-rich glycoprotein family protein[more]
AT5G08580.11.9e-0650.00Calcium-binding EF hand family protein[more]
Match NameE-valueIdentityDescription
sp|Q6Z4N4|40G3_ORYSJ4.8e-1573.33Ricin B-like lectin R40G3 OS=Oryza sativa subsp. japonica OX=39947 GN=R40G3 PE=2... [more]
sp|Q6Z4N6|40G2_ORYSJ8.2e-1573.33Ricin B-like lectin R40G2 OS=Oryza sativa subsp. japonica OX=39947 GN=R40G2 PE=2... [more]
sp|Q10M12|40C1_ORYSJ1.0e-1264.44Ricin B-like lectin R40C1 OS=Oryza sativa subsp. japonica OX=39947 GN=R40C1 PE=1... [more]
sp|Q945P1|EULS3_ARATH5.0e-1264.44Ricin B-like lectin EULS3 OS=Arabidopsis thaliana OX=3702 GN=EULS3 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A1S3BP44|A0A1S3BP44_CUCME4.6e-2383.08uncharacterized protein LOC103492016 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3BPT4|A0A1S3BPT4_CUCME4.6e-2383.08uncharacterized protein LOC103492016 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3BQ58|A0A1S3BQ58_CUCME4.6e-2383.08uncharacterized protein LOC103492016 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A0A0LXP1|A0A0A0LXP1_CUCSA3.0e-2281.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G615710 PE=4 SV=1[more]
tr|A0A1S3B4K8|A0A1S3B4K8_CUCME2.0e-1895.56extensin OS=Cucumis melo OX=3656 GN=LOC103485969 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR035992Ricin_B-like_lectins
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042742 defense response to bacterium
biological_process GO:0090332 stomatal closure
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0030246 carbohydrate binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034469.2.1MELO3C034469.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31257:SF2SUBFAMILY NOT NAMEDcoord: 1..47
NoneNo IPR availablePANTHERPTHR31257FAMILY NOT NAMEDcoord: 1..47
IPR035992Ricin B-like lectinsSUPERFAMILYSSF50370Ricin B-like lectinscoord: 3..46

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None