MELO3C034269.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C034269.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	TOX high mobility group box family member 4-A, putative isoform 4
Location	chr10 : 22116928 .. 22117140 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCAAATGAAGAAAGTATTAAGAACAAAGAGAAAGTGAAGAGCTTACTTCTTCTACTGCAGGCAACATATGAAGAAAGAGATGAAGTAAGAGATCAACTGCACAAACTGATGAACAAGATTATGCCAACTTCAATTAACTTCATTGGCCATCATGTTAATCAATCTCAACTTCAATTTTTTTCTTCACAGCAGAAAATATGACAAGAA

mRNA sequence

ATGGAAGCAAATGAAGAAAGTATTAAGAACAAAGAGAAAGTGAAGAGCTTACTTCTTCTACTGCAGGCAACATATGAAGAAAGAGATGAAGTAAGAGATCAACTGCACAAACTGATGAACAAGATTATGCCAACTTCAATTAACTTCATTGGCCATCATGTTAATCAATCTCAACTTCAATTTTTTTCTTCACAGCAGAAAATATGACAAGAA

Coding sequence (CDS)

ATGGAAGCAAATGAAGAAAGTATTAAGAACAAAGAGAAAGTGAAGAGCTTACTTCTTCTACTGCAGGCAACATATGAAGAAAGAGATGAAGTAAGAGATCAACTGCACAAACTGATGAACAAGATTATGCCAACTTCAATTAACTTCATTGGCCATCATGTTAATCAATCTCAACTTCAATTTTTTTCTTCACAGCAGAAAATATGA

Protein sequence

MEANEESIKNKEKVKSLLLLLQATYEERDEVRDQLHKLMNKIMPTSINFIGHHVNQSQLQFFSSQQKI

Homology

[Close]

BLAST of MELO3C034269.2 vs. NCBI nr
Match: XP_011657251.1 (PREDICTED: uncharacterized protein LOC101217302 [Cucumis sativus] >KGN47356.1 hypothetical protein Csa_6G303220 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 1.9e-12
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 1  MEANEESIKNKEKVKSLLLLLQATYEERDEVRDQLHKLMNKIMPTS 47
          MEANEES+KNKEKVKSLLLLLQA YEERDE RDQL KLMNKIMPT+
Sbjct: 33 MEANEESVKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKIMPTT 78

[Close]

BLAST of MELO3C034269.2 vs. NCBI nr
Match: XP_022148299.1 (uncharacterized protein LOC111016987 [Momordica charantia])

HSP 1 Score: 79.7 bits (195), Expect = 4.2e-12
Identity = 41/46 (89.13%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 1   MEANEESIKNKEKVKSLLLLLQATYEERDEVRDQLHKLMNKIMPTS 47
           MEANEESIKNKEKVKSLLLLLQA YEERDE RDQL KLMNK MPT+
Sbjct: 61  MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKFMPTA 106

[Close]

BLAST of MELO3C034269.2 vs. NCBI nr
Match: XP_022943940.1 (uncharacterized protein LOC111448511 [Cucurbita moschata])

HSP 1 Score: 79.7 bits (195), Expect = 4.2e-12
Identity = 41/46 (89.13%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 1  MEANEESIKNKEKVKSLLLLLQATYEERDEVRDQLHKLMNKIMPTS 47
          MEANEESIKNKEKVKSLLLLLQA YEERDE RDQL KLMNK MPT+
Sbjct: 47 MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKFMPTA 92

[Close]

BLAST of MELO3C034269.2 vs. NCBI nr
Match: XP_022986908.1 (uncharacterized protein LOC111484506 [Cucurbita maxima])

HSP 1 Score: 79.7 bits (195), Expect = 4.2e-12
Identity = 41/46 (89.13%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 1  MEANEESIKNKEKVKSLLLLLQATYEERDEVRDQLHKLMNKIMPTS 47
          MEANEESIKNKEKVKSLLLLLQA YEERDE RDQL KLMNK MPT+
Sbjct: 47 MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKFMPTA 92

[Close]

BLAST of MELO3C034269.2 vs. NCBI nr
Match: XP_023511993.1 (uncharacterized protein LOC111776837 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.7 bits (195), Expect = 4.2e-12
Identity = 41/46 (89.13%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 1  MEANEESIKNKEKVKSLLLLLQATYEERDEVRDQLHKLMNKIMPTS 47
          MEANEESIKNKEKVKSLLLLLQA YEERDE RDQL KLMNK MPT+
Sbjct: 47 MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKFMPTA 92

[Close]

BLAST of MELO3C034269.2 vs. TAIR10
Match: AT2G28690.1 (Protein of unknown function (DUF1635))

HSP 1 Score: 40.8 bits (94), Expect = 3.9e-04
Identity = 25/61 (40.98%), Postives = 37/61 (60.66%), Query Frame = 0


Query: 2  EANEESIKNKEKVKSLLLLLQATYEERDEVRDQLHKLMNKIMPTSINFIGHHVNQSQLQF 61
          +ANEE+  ++E+VK+LL LL+   +ERDE +DQL KL+     +SI     H +     F
Sbjct: 34 KANEETKLHQEEVKNLLHLLKLARQERDEAKDQLQKLLTIKTNSSITESNSHGSSPVDSF 93

Query: 62 F 63
          F
Sbjct: 94 F 94

[Close]

BLAST of MELO3C034269.2 vs. TrEMBL
Match: tr|A0A0A0KHV7|A0A0A0KHV7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G303220 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-12
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 1  MEANEESIKNKEKVKSLLLLLQATYEERDEVRDQLHKLMNKIMPTS 47
          MEANEES+KNKEKVKSLLLLLQA YEERDE RDQL KLMNKIMPT+
Sbjct: 33 MEANEESVKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKIMPTT 78

[Close]

BLAST of MELO3C034269.2 vs. TrEMBL
Match: tr|A0A1S3BKE0|A0A1S3BKE0_CUCME (Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103490578 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.6e-12
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 1  MEANEESIKNKEKVKSLLLLLQATYEERDEVRDQLHKLMNKIMPTS 47
          MEA+EESIKNKEKVKSLLLLLQA YEERDE RDQL KLMNKIMPT+
Sbjct: 33 MEASEESIKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKIMPTT 78

[Close]

BLAST of MELO3C034269.2 vs. TrEMBL
Match: tr|A0A2I4EMN7|A0A2I4EMN7_9ROSI (uncharacterized protein LOC108990971 isoform X1 OS=Juglans regia OX=51240 GN=LOC108990971 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-06
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 1  MEANEESIKNKEKVKSLLLLLQATYEERDEVRDQLHKLMNKIMPTS 47
          MEANEE  KNKE VKSLL LL+   +ERDE RDQL KL+NK+MP+S
Sbjct: 33 MEANEEIRKNKEYVKSLLNLLKIANQERDEARDQLQKLLNKLMPSS 78

[Close]

BLAST of MELO3C034269.2 vs. TrEMBL
Match: tr|A0A2I4EMN8|A0A2I4EMN8_9ROSI (uncharacterized protein LOC108990971 isoform X2 OS=Juglans regia OX=51240 GN=LOC108990971 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-06
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 1  MEANEESIKNKEKVKSLLLLLQATYEERDEVRDQLHKLMNKIMPTS 47
          MEANEE  KNKE VKSLL LL+   +ERDE RDQL KL+NK+MP+S
Sbjct: 20 MEANEEIRKNKEYVKSLLNLLKIANQERDEARDQLQKLLNKLMPSS 65

[Close]

BLAST of MELO3C034269.2 vs. TrEMBL
Match: tr|A0A1R3J982|A0A1R3J982_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_18442 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.6e-05
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 0


Query: 1   MEANEESIKNKEKVKSLLLLLQATYEERDEVRDQLHKLMNKIM--PTS-INFIGHHVNQS 60
           MEAN++  K+KE++K LL LL+  Y+ERDE RDQL KL+NK+M  P+S +  +  H   +
Sbjct: 33  MEANDQIRKHKEEIKQLLNLLKLAYQERDEARDQLQKLLNKLMILPSSPVEQLQQHQKSN 92

Query: 61  QLQFFSSQQKI 69
            L +  S+  +
Sbjct: 93  SLPYSQSENPL 103

The following BLAST results are available for this feature:

BLAST of MELO3C034269.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011657251.1	1.9e-12	89.13	PREDICTED: uncharacterized protein LOC101217302 [Cucumis sativus] >KGN47356.1 hy...	[more]
XP_022148299.1	4.2e-12	89.13	uncharacterized protein LOC111016987 [Momordica charantia]	[more]
XP_022943940.1	4.2e-12	89.13	uncharacterized protein LOC111448511 [Cucurbita moschata]	[more]
XP_022986908.1	4.2e-12	89.13	uncharacterized protein LOC111484506 [Cucurbita maxima]	[more]
XP_023511993.1	4.2e-12	89.13	uncharacterized protein LOC111776837 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C034269.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28690.1	3.9e-04	40.98	Protein of unknown function (DUF1635)	[more]

BLAST of MELO3C034269.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C034269.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KHV7\|A0A0A0KHV7_CUCSA	1.2e-12	89.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G303220 PE=4 SV=1	[more]
tr\|A0A1S3BKE0\|A0A1S3BKE0_CUCME	3.6e-12	89.13	Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103490578 PE=4 SV=1	[more]
tr\|A0A2I4EMN7\|A0A2I4EMN7_9ROSI	1.7e-06	69.57	uncharacterized protein LOC108990971 isoform X1 OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A2I4EMN8\|A0A2I4EMN8_9ROSI	1.7e-06	69.57	uncharacterized protein LOC108990971 isoform X2 OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A1R3J982\|A0A1R3J982_9ROSI	5.6e-05	43.66	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_18442 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012862	DUF1635

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034269.2.1	MELO3C034269.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 21..41
IPR012862	Protein of unknown function DUF1635	PFAM	PF07795	DUF1635	coord: 1..43 e-value: 5.7E-7 score: 29.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C034269.2	Silver-seed gourd	carmedB0186
MELO3C034269.2	Silver-seed gourd	carmedB0667
MELO3C034269.2	Watermelon (97103) v2	medwmbB065
MELO3C034269.2	Wax gourd	medwgoB075
MELO3C034269.2	Cucurbita maxima (Rimu)	cmamedB729
MELO3C034269.2	Cucurbita maxima (Rimu)	cmamedB732
MELO3C034269.2	Cucurbita moschata (Rifu)	cmomedB724
MELO3C034269.2	Cucurbita moschata (Rifu)	cmomedB726
MELO3C034269.2	Cucurbita pepo (Zucchini)	cpemedB427
MELO3C034269.2	Cucurbita pepo (Zucchini)	cpemedB428
MELO3C034269.2	Bottle gourd (USVL1VR-Ls)	lsimedB301
MELO3C034269.2	Watermelon (Charleston Gray)	medwcgB068
MELO3C034269.2	Watermelon (97103) v1	medwmB055