MELO3C034262.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C034262.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionUnknown protein
Locationchr10 : 21558939 .. 21559255 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATGTTGAGTTCAAAAGTTTTTATAACAAGAATGTTAATGCAAAACCCTTTCAAATCATCAAAGAATCAGAAGAGCATAAGGCTTCTACAAATAAGGAAATAAAAAGTATCCAAGTTCAAAATAATTATTCCAACAAAATGCTTTCTTCAATTGCAAGCCATGTTTTTTAAATTAGAAGAAATCATCAATCCTCCTTCTTTTGAAGAAACTCCTAGTCTCTTCCAACCTTTGGAAAAAGGTTAAGATAAAAACCCATAAACAAAATGCATATTAAATTAGAATAAATCATCAATCCTCCTTCACTTAAATG

mRNA sequence

ATGGAAGATGTTGAGTTCAAAAGTTTTTATAACAAGAATGTTAATGCAAAACCCTTTCAAATCATCAAAGAATCAGAAGAGCATAAGGCTTCTACAAATAAGGAAATAAAAAGTATCCAAGTTCAAAATAATTATTCCAACAAAATGCTTTCTTCAATTGCAAGCCATGTTTTTTAAATTAGAAGAAATCATCAATCCTCCTTCTTTTGAAGAAACTCCTAGTCTCTTCCAACCTTTGGAAAAAGGTTAAGATAAAAACCCATAAACAAAATGCATATTAAATTAGAATAAATCATCAATCCTCCTTCACTTAAATG

Coding sequence (CDS)

ATGGAAGATGTTGAGTTCAAAAGTTTTTATAACAAGAATGTTAATGCAAAACCCTTTCAAATCATCAAAGAATCAGAAGAGCATAAGGCTTCTACAAATAAGGAAATAAAAAGTATCCAAGTTCAAAATAATTATTCCAACAAAATGCTTTCTTCAATTGCAAGCCATGTTTTTTAA

Protein sequence

MEDVEFKSFYNKNVNAKPFQIIKESEEHKASTNKEIKSIQVQNNYSNKMLSSIASHVF
Homology
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BLAST of MELO3C034262.2 vs. NCBI nr
Match: XP_023520850.1 (uncharacterized protein LOC111784362 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-04
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 0 

Query: 1   MEDVEFKSFYNKNVNAKPFQIIKESEEHKASTNKEIKSIQVQNNYSNKMLSSIASHV 58
           +E+VEF ++Y + V A PF+ I E  E    T K+IK+IQ QNNYSNK+LS+IA+ +
Sbjct: 104 LEEVEFDNYYGEKVKASPFKHIPEGLEKGNPTLKDIKNIQHQNNYSNKILSTIATQL 160

The following BLAST results are available for this feature:
BLAST of MELO3C034262.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023520850.11.6e-0450.88uncharacterized protein LOC111784362 [Cucurbita pepo subsp. pepo][more]
BLAST of MELO3C034262.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C034262.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C034262.2 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034262.2.1MELO3C034262.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 22..42

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C034262.2Cucumber (Gy14) v2cgybmedB323
MELO3C034262.2Cucurbita maxima (Rimu)cmamedB729
MELO3C034262.2Cucurbita maxima (Rimu)cmamedB732
MELO3C034262.2Cucurbita maxima (Rimu)cmamedB748
MELO3C034262.2Cucurbita moschata (Rifu)cmomedB724
MELO3C034262.2Cucurbita moschata (Rifu)cmomedB726
MELO3C034262.2Cucurbita moschata (Rifu)cmomedB741
MELO3C034262.2Cucurbita pepo (Zucchini)cpemedB444
MELO3C034262.2Cucurbita pepo (Zucchini)cpemedB427
MELO3C034262.2Cucurbita pepo (Zucchini)cpemedB428
MELO3C034262.2Wild cucumber (PI 183967)cpimedB368
MELO3C034262.2Bottle gourd (USVL1VR-Ls)lsimedB298
MELO3C034262.2Watermelon (Charleston Gray)medwcgB066
MELO3C034262.2Silver-seed gourdcarmedB0186
MELO3C034262.2Silver-seed gourdcarmedB0667
MELO3C034262.2Cucumber (Chinese Long) v3cucmedB380
MELO3C034262.2Watermelon (97103) v2medwmbB063