MELO3C034247.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C034247.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	glial fibrillary acidic protein-like
Location	chr10 : 19360076 .. 19360303 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAATTGTCTTTTGGCAATAGAGAACGAAAAGTTGAGAGAAGAAGTCAAGAAATGGGTCCAGCTAACTGTTAATACTCAAAGAGATTTGGATGAGACGAAACGAAAGCAATTGGAGCAGGAGAAGAATAACGATTCTTTAAATACTAAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAACATTGTCGACTTGCATGAAGAGACAGAAGCTAAAAAG

mRNA sequence

ATAAATTGTCTTTTGGCAATAGAGAACGAAAAGTTGAGAGAAGAAGTCAAGAAATGGGTCCAGCTAACTGTTAATACTCAAAGAGATTTGGATGAGACGAAACGAAAGCAATTGGAGCAGGAGAAGAATAACGATTCTTTAAATACTAAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAACATTGTCGACTTGCATGAAGAGACAGAAGCTAAAAAG

Coding sequence (CDS)

ATAAATTGTCTTTTGGCAATAGAGAACGAAAAGTTGAGAGAAGAAGTCAAGAAATGGGTCCAGCTAACTGTTAATACTCAAAGAGATTTGGATGAGACGAAACGAAAGCAATTGGAGCAGGAGAAGAATAACGATTCTTTAAATACTAAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAACATTGTCGACTTGCATGAAGAGACAGAAGCTAAAAAG

Protein sequence

INCLLAIENEKLREEVKKWVQLTVNTQRDLDETKRKQLEQEKNNDSLNTKAIQVRKKNKRLLRNIVDLHEETEAKK

Homology

[Close]

BLAST of MELO3C034247.2 vs. NCBI nr
Match: XP_008464352.1 (PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 5.9e-23
Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 1   INCLLAIENEKLREEVKKWVQLTVNTQRDLDETKRKQLEQEKNNDSLNTKAIQVRKKNKR 60
           +NC+LA ENEKLREEVKKWVQ  VNTQRDLDE KRK+LE EK NDSLNT+AIQVRKKNKR
Sbjct: 27  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 86

Query: 61  LLRNIVDLHEETEAKK 77
           LLRNI +LHEE EA+K
Sbjct: 87  LLRNIANLHEEIEAEK 102

[Close]

BLAST of MELO3C034247.2 vs. NCBI nr
Match: KGN65327.1 (hypothetical protein Csa_1G328390 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 5.7e-10
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 4  LLAIENEKLREEVKKWVQLTVNTQRDLDETKR---KQLEQEKNNDSLNTKAIQVRKKNKR 63
          +LA ENE LR+EVK+WVQ    ++R L+E +R   +Q E EK+ +SLN +AIQ+RKKNKR
Sbjct: 4  VLATENEGLRKEVKRWVQKATTSERQLEEAQRHLQRQSELEKDMNSLNIEAIQIRKKNKR 63

Query: 64 LLRNIVDLHEETEAKK 77
          LLR+I  +H E EA+K
Sbjct: 64 LLRDIATMHSEAEAQK 79

[Close]

BLAST of MELO3C034247.2 vs. TrEMBL
Match: tr|A0A1S3CLQ1|A0A1S3CLQ1_CUCME (glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.9e-23
Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 1   INCLLAIENEKLREEVKKWVQLTVNTQRDLDETKRKQLEQEKNNDSLNTKAIQVRKKNKR 60
           +NC+LA ENEKLREEVKKWVQ  VNTQRDLDE KRK+LE EK NDSLNT+AIQVRKKNKR
Sbjct: 27  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 86

Query: 61  LLRNIVDLHEETEAKK 77
           LLRNI +LHEE EA+K
Sbjct: 87  LLRNIANLHEEIEAEK 102

[Close]

BLAST of MELO3C034247.2 vs. TrEMBL
Match: tr|A0A0A0LWU7|A0A0A0LWU7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G328390 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.8e-10
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 4  LLAIENEKLREEVKKWVQLTVNTQRDLDETKR---KQLEQEKNNDSLNTKAIQVRKKNKR 63
          +LA ENE LR+EVK+WVQ    ++R L+E +R   +Q E EK+ +SLN +AIQ+RKKNKR
Sbjct: 4  VLATENEGLRKEVKRWVQKATTSERQLEEAQRHLQRQSELEKDMNSLNIEAIQIRKKNKR 63

Query: 64 LLRNIVDLHEETEAKK 77
          LLR+I  +H E EA+K
Sbjct: 64 LLRDIATMHSEAEAQK 79

The following BLAST results are available for this feature:

BLAST of MELO3C034247.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464352.1	5.9e-23	81.58	PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo]	[more]
KGN65327.1	5.7e-10	55.26	hypothetical protein Csa_1G328390 [Cucumis sativus]	[more]

BLAST of MELO3C034247.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C034247.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C034247.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CLQ1\|A0A1S3CLQ1_CUCME	3.9e-23	81.58	glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=...	[more]
tr\|A0A0A0LWU7\|A0A0A0LWU7_CUCSA	3.8e-10	55.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G328390 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034247.2.1	MELO3C034247.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 30..71

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C034247.2	Cucumber (Gy14) v2	cgybmedB313
MELO3C034247.2	Cucumber (Chinese Long) v3	cucmedB364
MELO3C034247.2	Wax gourd	medwgoB086