MELO3C034226.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C034226.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic
Location	chr10 : 18242157 .. 18242641 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGGTAATTTGTCTTTTTGgctagtCAAACATGGACTGGTTCATAGATCTTTGGGTTTCGATTACCAAGGAATAGAGACTTTACAAATAAAGCCCGAGGAATGGCAcCgTATATTTTTTTTTGTAAAGAATAACAAAGCAAAGAACGAGTGAATCTTCATCAATTTTTCATTGTAAATGGGAAATACTTATAAAAATAAAAACAAAAAAGGGGGGTGGGGGAAGATAAAAAAGATGCAGGGTAATTTGTCTTTTTGGCTAGTTGAACATGAACTGATTCATAGATCTTTGGGTTTCGATTACCAAGGAATAGAGACTTTACAAATAAAGCCCAAGGATGGCACTCCATTGCAGCCATTTTATATGTATATGGTTACAATTATCTATGTTTTCCATGTGCTTATGATGTAACACCAGGTGGACTGTTAGCTAGTGTGTATCATCTTACGAGAATCGTGTATGGTATAGATCAACCGAAAGAG

mRNA sequence

ATGCAGGGTAATTTGTCTTTTTGgctagtCAAACATGGACTGGTTCATAGATCTTTGGGTTTCGATTACCAAGGAATAGAGACTTTACAAATAAAGCCCAAGGATGGCACTCCATTGCAGCCATTTTATATGTATATGGTTACAATTATCTATGTTTTCCATGTGCTTATGATGTAACACCAGGTGGACTGTTAGCTAGTGTGTATCATCTTACGAGAATCGTGTATGGTATAGATCAACCGAAAGAG

Coding sequence (CDS)

ATGCAGGGTAATTTGTCTTTTTGgctagtCAAACATGGACTGGTTCATAGATCTTTGGGTTTCGATTACCAAGGAATAGAGACTTTACAAATAAAGCCCAAGGATGGCACTCCATTGCAGCCATTTTATATGTATATGGTTACAATTATCTATGTTTTCCATGTGCTTATGATGTAA

Protein sequence

MQGNLSFWLVKHGLVHRSLGFDYQGIETLQIKPKDGTPLQPFYMYMVTIIYVFHVLMM

Homology

[Close]

BLAST of MELO3C034226.2 vs. NCBI nr
Match: AFU94850.1 (NdhJ, partial (chloroplast) [Phyllanthus urinaria])

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-10
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 1  MQGNLSFWLVKHGLVHRSLGFDYQGIETLQIKPKDGTPLQPFYMYMVTIIYVF 54
          MQG LS WLVKHGLVHRSLGFDYQGIETLQIKP+D  P+         I+YV+
Sbjct: 1  MQGRLSVWLVKHGLVHRSLGFDYQGIETLQIKPEDWHPI-------AVILYVY 46

[Close]

BLAST of MELO3C034226.2 vs. NCBI nr
Match: YP_009334178.1 (NADH-plastoquinone oxidoreductase subunit J (chloroplast) [Caragana microphylla] >YP_009389918.1 NADH-plastoquinone oxidoreductase subunit J (chloroplast) [Caragana korshinskii] >APL97384.1 NADH-plastoquinone oxidoreductase subunit J (chloroplast) [Caragana microphylla] >APL97460.1 NADH-plastoquinone oxidoreductase subunit J (chloroplast) [Caragana korshinskii])

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-10
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 1  MQGNLSFWLVKHGLVHRSLGFDYQGIETLQIKPKD 36
          MQGNLS WLVKHG+VHRSLGFDYQGIETLQIKP+D
Sbjct: 1  MQGNLSAWLVKHGIVHRSLGFDYQGIETLQIKPED 35

[Close]

BLAST of MELO3C034226.2 vs. NCBI nr
Match: YP_009437880.1 (NADH-plastoquinone oxidoreductase subunit J (chloroplast) [Tibetia liangshanensis] >ATG33783.1 NADH-plastoquinone oxidoreductase subunit J (chloroplast) [Tibetia liangshanensis])

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-10
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 1  MQGNLSFWLVKHGLVHRSLGFDYQGIETLQIKPKD 36
          MQGNLS WLVKHG+VHRSLGFDYQGIETLQIKP+D
Sbjct: 1  MQGNLSAWLVKHGIVHRSLGFDYQGIETLQIKPED 35

[Close]

BLAST of MELO3C034226.2 vs. NCBI nr
Match: ABG74843.1 (NADH dehydrogenase 19 kDa subunit (chloroplast) [Menodora longiflora])

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-10
Identity = 35/46 (76.09%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 1  MQGNLSFWLVKHGLVHRSLGFDYQGIETLQIKPKDGTPLQP-FYMY 46
          MQG LS WLVKHGL+HRSLGFDYQGIETLQIKPKD   +   FY+Y
Sbjct: 1  MQGPLSAWLVKHGLIHRSLGFDYQGIETLQIKPKDWHSIAVIFYVY 46

[Close]

BLAST of MELO3C034226.2 vs. NCBI nr
Match: AOC32762.1 (NADH-plastoquinone oxidoreductase subunit J (chloroplast) [Chuanminshen violaceum])

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-10
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MQGNLSFWLVKHGLVHRSLGFDYQGIETLQIKPKD 36
          MQG LS WLVKHGL+HRSLGFDYQGIETLQIKPKD
Sbjct: 1  MQGRLSAWLVKHGLIHRSLGFDYQGIETLQIKPKD 35

[Close]

BLAST of MELO3C034226.2 vs. TAIR10
Match: ATCG00420.1 (NADH dehydrogenase subunit J)

HSP 1 Score: 66.6 bits (161), Expect = 5.7e-12
Identity = 33/53 (62.26%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 1  MQGNLSFWLVKHGLVHRSLGFDYQGIETLQIKPKDGTPLQPFYMYMVTIIYVF 54
          MQG LS WL K GLVHRSLGFDYQGIETLQIKP+D       +  +  I+YV+
Sbjct: 1  MQGTLSVWLAKRGLVHRSLGFDYQGIETLQIKPED-------WHSIAVILYVY 46

[Close]

BLAST of MELO3C034226.2 vs. Swiss-Prot
Match: sp|Q7FNS9|NDHJ_ATRBE (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Atropa belladonna OX=33113 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-12
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 1  MQGNLSFWLVKHGLVHRSLGFDYQGIETLQIKPKDGTPLQP-FYMY 46
          MQG LS WLVKHGL+HRSLGFDYQGIETLQIKP+D   +   FY+Y
Sbjct: 1  MQGRLSAWLVKHGLIHRSLGFDYQGIETLQIKPEDWHSIAVIFYVY 46

[Close]

BLAST of MELO3C034226.2 vs. Swiss-Prot
Match: sp|Q3C1J9|NDHJ_NICSY (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-12
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 1  MQGNLSFWLVKHGLVHRSLGFDYQGIETLQIKPKDGTPLQP-FYMY 46
          MQG LS WLVKHGL+HRSLGFDYQGIETLQIKP+D   +   FY+Y
Sbjct: 1  MQGRLSAWLVKHGLIHRSLGFDYQGIETLQIKPEDWHSIAVIFYVY 46

[Close]

BLAST of MELO3C034226.2 vs. Swiss-Prot
Match: sp|Q33C31|NDHJ_NICTO (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Nicotiana tomentosiformis OX=4098 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-12
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 1  MQGNLSFWLVKHGLVHRSLGFDYQGIETLQIKPKDGTPLQP-FYMY 46
          MQG LS WLVKHGL+HRSLGFDYQGIETLQIKP+D   +   FY+Y
Sbjct: 1  MQGRLSAWLVKHGLIHRSLGFDYQGIETLQIKPEDWHSIAVIFYVY 46

[Close]

BLAST of MELO3C034226.2 vs. Swiss-Prot
Match: sp|Q2MII4|NDHJ_SOLBU (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Solanum bulbocastanum OX=147425 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-12
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 1  MQGNLSFWLVKHGLVHRSLGFDYQGIETLQIKPKDGTPLQP-FYMY 46
          MQG LS WLVKHGL+HRSLGFDYQGIETLQIKP+D   +   FY+Y
Sbjct: 1  MQGRLSAWLVKHGLIHRSLGFDYQGIETLQIKPEDWHSIAVIFYVY 46

[Close]

BLAST of MELO3C034226.2 vs. Swiss-Prot
Match: sp|Q2MI97|NDHJ_SOLLC (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Solanum lycopersicum OX=4081 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-12
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 1  MQGNLSFWLVKHGLVHRSLGFDYQGIETLQIKPKDGTPLQP-FYMY 46
          MQG LS WLVKHGL+HRSLGFDYQGIETLQIKP+D   +   FY+Y
Sbjct: 1  MQGRLSAWLVKHGLIHRSLGFDYQGIETLQIKPEDWHSIAVIFYVY 46

[Close]

BLAST of MELO3C034226.2 vs. TrEMBL
Match: tr|A0A1L5BWF5|A0A1L5BWF5_9FABA (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Caragana microphylla OX=220690 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 9.9e-11
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 1  MQGNLSFWLVKHGLVHRSLGFDYQGIETLQIKPKD 36
          MQGNLS WLVKHG+VHRSLGFDYQGIETLQIKP+D
Sbjct: 1  MQGNLSAWLVKHGIVHRSLGFDYQGIETLQIKPED 35

[Close]

BLAST of MELO3C034226.2 vs. TrEMBL
Match: tr|A0A291FIA2|A0A291FIA2_9FABA (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Tibetia liangshanensis OX=1915067 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 9.9e-11
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 1  MQGNLSFWLVKHGLVHRSLGFDYQGIETLQIKPKD 36
          MQGNLS WLVKHG+VHRSLGFDYQGIETLQIKP+D
Sbjct: 1  MQGNLSAWLVKHGIVHRSLGFDYQGIETLQIKPED 35

[Close]

BLAST of MELO3C034226.2 vs. TrEMBL
Match: tr|A0A1Z1CI44|A0A1Z1CI44_9FABA (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Caragana korshinskii OX=220689 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 9.9e-11
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 1  MQGNLSFWLVKHGLVHRSLGFDYQGIETLQIKPKD 36
          MQGNLS WLVKHG+VHRSLGFDYQGIETLQIKP+D
Sbjct: 1  MQGNLSAWLVKHGIVHRSLGFDYQGIETLQIKPED 35

[Close]

BLAST of MELO3C034226.2 vs. TrEMBL
Match: tr|K4K9C1|K4K9C1_PHYUR (NAD(P)H-quinone oxidoreductase (Fragment) OS=Phyllanthus urinaria OX=296035 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 9.9e-11
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 1  MQGNLSFWLVKHGLVHRSLGFDYQGIETLQIKPKDGTPLQPFYMYMVTIIYVF 54
          MQG LS WLVKHGLVHRSLGFDYQGIETLQIKP+D  P+         I+YV+
Sbjct: 1  MQGRLSVWLVKHGLVHRSLGFDYQGIETLQIKPEDWHPI-------AVILYVY 46

[Close]

BLAST of MELO3C034226.2 vs. TrEMBL
Match: tr|Q06QV3|Q06QV3_9LAMI (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Menodora longiflora OX=389177 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10
Identity = 35/46 (76.09%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 1  MQGNLSFWLVKHGLVHRSLGFDYQGIETLQIKPKDGTPLQP-FYMY 46
          MQG LS WLVKHGL+HRSLGFDYQGIETLQIKPKD   +   FY+Y
Sbjct: 1  MQGPLSAWLVKHGLIHRSLGFDYQGIETLQIKPKDWHSIAVIFYVY 46

The following BLAST results are available for this feature:

BLAST of MELO3C034226.2 vs. NCBI nr


Match Name	E-value	Identity	Description
AFU94850.1	1.5e-10	67.92	NdhJ, partial (chloroplast) [Phyllanthus urinaria]	[more]
YP_009334178.1	1.5e-10	91.43	NADH-plastoquinone oxidoreductase subunit J (chloroplast) [Caragana microphylla]...	[more]
YP_009437880.1	1.5e-10	91.43	NADH-plastoquinone oxidoreductase subunit J (chloroplast) [Tibetia liangshanensi...	[more]
ABG74843.1	2.0e-10	76.09	NADH dehydrogenase 19 kDa subunit (chloroplast) [Menodora longiflora]	[more]
AOC32762.1	2.0e-10	91.43	NADH-plastoquinone oxidoreductase subunit J (chloroplast) [Chuanminshen violaceu...	[more]

BLAST of MELO3C034226.2 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00420.1	5.7e-12	62.26	NADH dehydrogenase subunit J	[more]

BLAST of MELO3C034226.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q7FNS9\|NDHJ_ATRBE	1.1e-12	73.91	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Atropa belladonna OX=...	[more]
sp\|Q3C1J9\|NDHJ_NICSY	1.1e-12	73.91	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Nicotiana sylvestris ...	[more]
sp\|Q33C31\|NDHJ_NICTO	1.1e-12	73.91	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Nicotiana tomentosifo...	[more]
sp\|Q2MII4\|NDHJ_SOLBU	1.1e-12	73.91	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Solanum bulbocastanum...	[more]
sp\|Q2MI97\|NDHJ_SOLLC	1.1e-12	73.91	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Solanum lycopersicum ...	[more]

BLAST of MELO3C034226.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1L5BWF5\|A0A1L5BWF5_9FABA	9.9e-11	91.43	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Caragana microphylla ...	[more]
tr\|A0A291FIA2\|A0A291FIA2_9FABA	9.9e-11	91.43	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Tibetia liangshanensi...	[more]
tr\|A0A1Z1CI44\|A0A1Z1CI44_9FABA	9.9e-11	91.43	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Caragana korshinskii ...	[more]
tr\|K4K9C1\|K4K9C1_PHYUR	9.9e-11	67.92	NAD(P)H-quinone oxidoreductase (Fragment) OS=Phyllanthus urinaria OX=296035 GN=n...	[more]
tr\|Q06QV3\|Q06QV3_9LAMI	1.3e-10	76.09	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Menodora longiflora O...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0006810	transport
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0009536	plastid
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
molecular_function	GO:0048038	quinone binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034226.2.1	MELO3C034226.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10884:SF9	NAD P H-QUINONE OXIDOREDUCTASE SUBUNIT J, CHLOROPLASTIC	coord: 1..40
None	No IPR available	PANTHER	PTHR10884	NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 3	coord: 1..40

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C034226.2	Cucumber (Gy14) v2	cgybmedB320
MELO3C034226.2	Cucurbita maxima (Rimu)	cmamedB728
MELO3C034226.2	Cucurbita maxima (Rimu)	cmamedB731
MELO3C034226.2	Cucurbita moschata (Rifu)	cmomedB722
MELO3C034226.2	Cucurbita moschata (Rifu)	cmomedB725
MELO3C034226.2	Cucurbita pepo (Zucchini)	cpemedB425
MELO3C034226.2	Cucurbita pepo (Zucchini)	cpemedB426
MELO3C034226.2	Wild cucumber (PI 183967)	cpimedB364
MELO3C034226.2	Cucumber (Chinese Long) v2	cumedB361
MELO3C034226.2	Bottle gourd (USVL1VR-Ls)	lsimedB299
MELO3C034226.2	Watermelon (Charleston Gray)	medwcgB067
MELO3C034226.2	Watermelon (97103) v1	medwmB058
MELO3C034226.2	Silver-seed gourd	carmedB0092
MELO3C034226.2	Silver-seed gourd	carmedB0668
MELO3C034226.2	Cucumber (Chinese Long) v3	cucmedB377
MELO3C034226.2	Watermelon (97103) v2	medwmbB064
MELO3C034226.2	Wax gourd	medwgoB073