MELO3C034196.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C034196.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	protein FAR1-RELATED SEQUENCE 4-like
Location	chr10 : 14939738 .. 14940707 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACTGAATATAGGTTTTTCTTCTTTTGTTTCAAATGATGAAGTAATAAGAGACATCTCTTATTATTCTGATTTGAAGGAAAAAGTTTATTTGAAAGTAAAGAAGTGCTTTCAAAGTGTTTTTGTATAATAGCAGTGAAGAACAACTTTCAGTTTAGGACTACAGTATCAAATTTGTCTCTTGAATTTAAATGTCTGCAAGAAGGCTGCAAATGATATATAAGGGCATCTCGTTATAAGAAGAGTGATTTGTGGATGCTACGAAAATACACTTCTGACCATGATTGTTCATTGAGTACTGCCTAAAGTTCTCACATGCAAGCTTCTTCAACAATAATTGGCAATTGTTTGATAGATGATTTTAGATTCATGTCTACTGATCGTTCATTTTCTAAAGAGATTGTGCATAAGGCTCGTATAAATCTTGGAGTTAATATAAGTTACCAAAAAGCTTGGAGGGCAAAAGAACATATGGTAAAGATATTACATGGTGACACAGTTGAATCGTATGCCTTGATTCCAAGATTCTTTGATAAATTGGTTGAATCTAACCCAGGTATGATCAATTTTGTATATCAAATTTAAATTGATTTGTAGATAGATGTGGATAGACTAATATCACAATCTATCTAGATAGATAAATATTGGCATCTTTCATATTCTTTCTGTTCTTTTTTGTTTGTGCTGATAAAAATGTGTTTTTAATTATTATAAGTACATGCACTACTTTAGAAATGGATGATAGTGGTCATTTCAATTTTTGTTTTATGACTTTTGGTGCATCAATTGAGGGGTGGAAATATTGTAGACCTATTATTTCTGTTTATGGGATATTTTTGTAGTGTAAGTTTGATGGCATCCTATTAACAGCCTCATCACAAGATGGTAACAATCAAATCTTCCCTCTTGATTTTGCCATTGTAGATCTTGAAAATGATGTATCATGGACATGGTTTTTTGAGAAGATA

mRNA sequence

ATGTCACTGAATATAGGTTTTTCTTCTTTTGTTTCAAATGATGAAGTAATAAGAGACATCTCTTATTATTCTGATTTGAAGGAAAAAGTTTATTTGAAAGTAAAGAAGTGCTTTCAAAGTGTTTTTGTATAATAGCAGTGAAGAACAACTTTCAGTTTAGGACTACAGTATCAAATTTGTCTCTTGAATTTAAATGTCTGCAAGAAGGCTGCAAATGATATATAAGGGCATCTCGTTATAAGAAGAGTGATTTGTGGATGCTACGAAAATACACTTCTGACCATGATTGTTCATTGAGTACTGCCTAAAGTTCTCACATATTCATGTCTACTGATCGTTCATTTTCTAAAGAGATTGTGCATAAGGCTCGTATAAATCTTGGAGTTAATATAAGTTACCAAAAAGCTTGGAGGGCAAAAGAACATATGGTAAAGATATTACATGGTGACACAGTTGAATCGTATGCCTTGATTCCAAGATTCTTTGATAAATTGGTTGAATCTAACCCAGGTACATGCACTACTTTAGAAATGGATGATAGTGGTCATTTCAATTTTTGTTTTATGACTTTTGGTGCATCAATTGAGGGGTGGAAATATTGTAGACCTATTATTTCTGTTTATGGGATATTTTTGTAGTGTAAGTTTGATGGCATCCTATTAACAGCCTCATCACAAGATGGTAACAATCAAATCTTCCCTCTTGATTTTGCCATTGTAGATCTTGAAAATGATGTATCATGGACATGGTTTTTTGAGAAGATA

Coding sequence (CDS)

ATGTCTACTGATCGTTCATTTTCTAAAGAGATTGTGCATAAGGCTCGTATAAATCTTGGAGTTAATATAAGTTACCAAAAAGCTTGGAGGGCAAAAGAACATATGGTAAAGATATTACATGGTGACACAGTTGAATCGTATGCCTTGATTCCAAGATTCTTTGATAAATTGGTTGAATCTAACCCAGGTACATGCACTACTTTAGAAATGGATGATAGTGGTCATTTCAATTTTTGTTTTATGACTTTTGGTGCATCAATTGAGGGGTGGAAATATTGTAGACCTATTATTTCTGTTTATGGGATATTTTTGTAG

Protein sequence

MSTDRSFSKEIVHKARINLGVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVESNPGTCTTLEMDDSGHFNFCFMTFGASIEGWKYCRPIISVYGIFL

Homology

[Close]

BLAST of MELO3C034196.2 vs. NCBI nr
Match: XP_022155934.1 (uncharacterized protein LOC111022933 [Momordica charantia])

HSP 1 Score: 119.8 bits (299), Expect = 5.6e-24
Identity = 58/103 (56.31%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 2   STDRSFSKEIVHKARINLGVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVESN 61
           S+DRS  K I+H  R N GV ISY KAWRAK  + K+L GD  +SYALIP+ F KL E N
Sbjct: 9   SSDRSTPKVIIHHMRTNYGVAISYYKAWRAKTTVNKLLTGDADDSYALIPKIFVKLKELN 68

Query: 62  PGTCTTLEMDDSGHFNFCFMTFGASIEGWKYCRPIISVYGIFL 105
           P   T  E+D + HF +CFM  GASIE W+YCR  IS+ G FL
Sbjct: 69  PCIYTAYEIDKTRHFKYCFMALGASIESWRYCRHNISIDGTFL 111

[Close]

BLAST of MELO3C034196.2 vs. NCBI nr
Match: XP_022841929.1 (uncharacterized protein LOC111365622 [Olea europaea var. sylvestris])

HSP 1 Score: 105.9 bits (263), Expect = 8.3e-20
Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 9   KEIVHKARINLGVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVESNPGTCTTL 68
           KEI ++     GV ++Y KAWR +E  +K++ GD  ES++ IP FF  L + NPGT T L
Sbjct: 253 KEICNEMLHTFGVYLNYTKAWRCREQTLKMIRGDPTESFSRIPSFFYMLQQKNPGTVTYL 312

Query: 69  EMDDSGHFNFCFMTFGASIEGWKYCRPIISVYGIFL 105
           E+D    F +CFM  GASI GW +CRP+I V G +L
Sbjct: 313 EIDSHNRFKYCFMALGASIRGWPHCRPVIVVDGTYL 348

[Close]

BLAST of MELO3C034196.2 vs. NCBI nr
Match: XP_022874020.1 (uncharacterized protein LOC111392853 [Olea europaea var. sylvestris])

HSP 1 Score: 104.4 bits (259), Expect = 2.4e-19
Identity = 44/97 (45.36%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 8   SKEIVHKARINLGVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVESNPGTCTT 67
           SK+I +      GV ++Y KAWR++E  ++++  D  ES+  IPRFF  L + NPGT T 
Sbjct: 252 SKDICNNMLHTYGVYLNYSKAWRSREQTLRMIRDDPTESFGKIPRFFYMLQQKNPGTVTE 311

Query: 68  LEMDDSGHFNFCFMTFGASIEGWKYCRPIISVYGIFL 105
           LE+D    F +CFMT  ASI+GW++CRP++ V G +L
Sbjct: 312 LEVDSHNRFKYCFMTLRASIQGWEHCRPVVVVDGTYL 348

[Close]

BLAST of MELO3C034196.2 vs. NCBI nr
Match: XP_022872609.1 (uncharacterized protein LOC111391594 [Olea europaea var. sylvestris])

HSP 1 Score: 103.6 bits (257), Expect = 4.1e-19
Identity = 42/85 (49.41%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 20  GVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVESNPGTCTTLEMDDSGHFNFC 79
           GV+++Y +AWR++E  +K+L GD  +S+  IP FF  L ++NPG+ T+LE+D    F +C
Sbjct: 240 GVSLNYVQAWRSREETLKLLRGDPTDSFNKIPAFFSVLQQTNPGSVTSLEIDGHNRFKYC 299

Query: 80  FMTFGASIEGWKYCRPIISVYGIFL 105
           FM  GASI GWK+CRPI+ V G +L
Sbjct: 300 FMALGASIRGWKHCRPIVVVDGTYL 324

[Close]

BLAST of MELO3C034196.2 vs. NCBI nr
Match: XP_022852353.1 (uncharacterized protein LOC111373987 [Olea europaea var. sylvestris])

HSP 1 Score: 102.8 bits (255), Expect = 7.0e-19
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 3   TDRSFSKEIVHKARINLGVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVESNP 62
           T    S +++HK     GV+++Y KAWR++E  +K++ GD   S+ L+P +F  L + N 
Sbjct: 253 TPNDISNDMLHK----YGVSVNYMKAWRSREQTLKLIRGDPTTSFQLLPSYFFMLQQMNI 312

Query: 63  GTCTTLEMDDSGHFNFCFMTFGASIEGWKYCRPIISVYGIFL 105
           GT T +E D    F +CFM  GASI GWKYCRP+I V G +L
Sbjct: 313 GTITRIETDHLDRFKYCFMALGASIGGWKYCRPVIVVDGTYL 350

[Close]

BLAST of MELO3C034196.2 vs. TAIR10
Match: AT1G64260.1 (MuDR family transposase)

HSP 1 Score: 43.9 bits (102), Expect = 7.0e-05
Identity = 25/85 (29.41%), Postives = 40/85 (47.06%), Query Frame = 0


Query: 20  GVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVESNPGTCTTLEMD-----DSG 79
           G  +   K    K  ++K + GD  +S+ ++P+       SN G     + D     D  
Sbjct: 298 GYELQTSKMRDGKLEVIKRVFGDEDQSFRVMPKLISAFHSSN-GLLVDWQYDLFPNPDFA 357

Query: 80  HFNFCFMTFGASIEGWKYCRPIISV 100
            F   F +F  SIEG+++CRP+I V
Sbjct: 358 SFRGVFWSFSQSIEGFQHCRPLIVV 381

[Close]

BLAST of MELO3C034196.2 vs. TrEMBL
Match: tr|A0A1S4E392|A0A1S4E392_CUCME (uncharacterized protein LOC107991824 OS=Cucumis melo OX=3656 GN=LOC107991824 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.0e-17
Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 10  EIVHKARINLGVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVESNPGTCTTLE 69
           ++++  +I+  VNISY KAWR +E  +  + G   +SYA++  F D L+ +NPGT T  E
Sbjct: 11  DVINYMKIHHSVNISYDKAWRGREIALNSIRGTPEDSYAMLSAFSDALIRNNPGTYTAEE 70

Query: 70  MDDSGHFNFCFMTFGASIEGWKYCRPIISVYG 102
            DD G F F FM   ASI+ W YC P+ISV G
Sbjct: 71  ADDEGRFKFYFMALAASIDAWNYCVPVISVDG 102

[Close]

BLAST of MELO3C034196.2 vs. TrEMBL
Match: tr|A0A1S3C300|A0A1S3C300_CUCME (uncharacterized protein LOC103495899 OS=Cucumis melo OX=3656 GN=LOC103495899 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-16
Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = 0


Query: 10  EIVHKARINLGVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVESNPGTCTTLE 69
           ++++  +I+  VNISY KAW  +E  +  + G   +SYA++  F D L+ +NPGT T  E
Sbjct: 245 DVINYMKIHHSVNISYDKAWGGREIALNSIRGTPEDSYAMLSAFSDALIRNNPGTYTAEE 304

Query: 70  MDDSGHFNFCFMTFGASIEGWKYCRPIISVYG 102
            DD G F F FM   ASI+ W YC P+ISV G
Sbjct: 305 ADDEGRFKFYFMALAASIDAWNYCVPVISVDG 336

[Close]

BLAST of MELO3C034196.2 vs. TrEMBL
Match: tr|A0A1S4E0D5|A0A1S4E0D5_CUCME (uncharacterized protein LOC107991253 OS=Cucumis melo OX=3656 GN=LOC107991253 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.2e-16
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 10  EIVHKARINLGVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVESNPGTCTTLE 69
           ++++  +I+  VN+SY KAWR +E  +  + G   +SY ++  F D L+ +NPGT T  E
Sbjct: 170 DVINYMKIHHDVNVSYDKAWRGREIALNSIRGTPKDSYVMLSTFSDALIRNNPGTYTAKE 229

Query: 70  MDDSGHFNFCFMTFGASIEGWKYCRPIISVYG 102
            DD G F F FM    SI+ W YC P+ISV G
Sbjct: 230 ADDEGRFKFYFMALATSIDAWNYCVPVISVDG 261

[Close]

BLAST of MELO3C034196.2 vs. TrEMBL
Match: tr|U5D175|U5D175_AMBTC (Uncharacterized protein (Fragment) OS=Amborella trichopoda OX=13333 GN=AMTR_s04652p00001680 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.7e-16
Identity = 45/102 (44.12%), Postives = 60/102 (58.82%), Query Frame = 0


Query: 3   TDRSFSKEIVHKARINLGVNISYQKAWRAKEHMVKILHGDTVESYALIPRFFDKLVESNP 62
           T +    E+ HK     GV ++Y KAWR+KEH  + L G   ESY L+P F   L ++NP
Sbjct: 213 TPQDIRGEMKHK----YGVRMNYMKAWRSKEHAQEELRGKANESYRLLPGFLHMLQKTNP 272

Query: 63  GTCTTLEMDDSGHFNFCFMTFGASIEGWKYCRPIISVYGIFL 105
           GT   +E +D   F + F+   ASI+GWK C+PII V G FL
Sbjct: 273 GTIVHMETEDDNSFKYLFVALDASIKGWKKCKPIIVVDGTFL 310

[Close]

BLAST of MELO3C034196.2 vs. TrEMBL
Match: tr|A0A1S4E145|A0A1S4E145_CUCME (uncharacterized protein LOC107991486 OS=Cucumis melo OX=3656 GN=LOC107991486 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.3e-16
Identity = 42/66 (63.64%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 39  LHGDTVESYALIPRFFDKLVESNPGTCTTLEMDDSGHFNFCFMTFGASIEGWKYCRPIIS 98
           L+G+  ESYALIP FF KL E NPG+ T  E D  GHF +CFM  GA IEGWKYCRP IS
Sbjct: 4   LNGEAKESYALIPNFFMKLKEINPGSFTAYETDTEGHFKYCFMAIGACIEGWKYCRPNIS 63

Query: 99  VYGIFL 105
           V   FL
Sbjct: 64  VDDTFL 69

The following BLAST results are available for this feature:

BLAST of MELO3C034196.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155934.1	5.6e-24	56.31	uncharacterized protein LOC111022933 [Momordica charantia]	[more]
XP_022841929.1	8.3e-20	47.92	uncharacterized protein LOC111365622 [Olea europaea var. sylvestris]	[more]
XP_022874020.1	2.4e-19	45.36	uncharacterized protein LOC111392853 [Olea europaea var. sylvestris]	[more]
XP_022872609.1	4.1e-19	49.41	uncharacterized protein LOC111391594 [Olea europaea var. sylvestris]	[more]
XP_022852353.1	7.0e-19	44.12	uncharacterized protein LOC111373987 [Olea europaea var. sylvestris]	[more]

BLAST of MELO3C034196.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G64260.1	7.0e-05	29.41	MuDR family transposase	[more]

BLAST of MELO3C034196.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C034196.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E392\|A0A1S4E392_CUCME	2.0e-17	45.65	uncharacterized protein LOC107991824 OS=Cucumis melo OX=3656 GN=LOC107991824 PE=...	[more]
tr\|A0A1S3C300\|A0A1S3C300_CUCME	1.3e-16	44.57	uncharacterized protein LOC103495899 OS=Cucumis melo OX=3656 GN=LOC103495899 PE=...	[more]
tr\|A0A1S4E0D5\|A0A1S4E0D5_CUCME	2.2e-16	42.39	uncharacterized protein LOC107991253 OS=Cucumis melo OX=3656 GN=LOC107991253 PE=...	[more]
tr\|U5D175\|U5D175_AMBTC	3.7e-16	44.12	Uncharacterized protein (Fragment) OS=Amborella trichopoda OX=13333 GN=AMTR_s046...	[more]
tr\|A0A1S4E145\|A0A1S4E145_CUCME	6.3e-16	63.64	uncharacterized protein LOC107991486 OS=Cucumis melo OX=3656 GN=LOC107991486 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034196.2.1	MELO3C034196.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31973	FAMILY NOT NAMED	coord: 6..102

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C034196.2	Cucumber (Gy14) v2	cgybmedB311
MELO3C034196.2	Cucumber (Gy14) v1	cgymedB238
MELO3C034196.2	Cucurbita maxima (Rimu)	cmamedB737
MELO3C034196.2	Cucurbita maxima (Rimu)	cmamedB742
MELO3C034196.2	Cucurbita moschata (Rifu)	cmomedB738
MELO3C034196.2	Cucurbita pepo (Zucchini)	cpemedB441
MELO3C034196.2	Wild cucumber (PI 183967)	cpimedB351
MELO3C034196.2	Cucumber (Chinese Long) v2	cumedB349
MELO3C034196.2	Bottle gourd (USVL1VR-Ls)	lsimedB088
MELO3C034196.2	Bottle gourd (USVL1VR-Ls)	lsimedB300
MELO3C034196.2	Watermelon (Charleston Gray)	medwcgB044
MELO3C034196.2	Watermelon (Charleston Gray)	medwcgB065
MELO3C034196.2	Watermelon (97103) v1	medwmB077
MELO3C034196.2	Silver-seed gourd	carmedB0671
MELO3C034196.2	Cucumber (Chinese Long) v3	cucmedB363
MELO3C034196.2	Watermelon (97103) v2	medwmbB044
MELO3C034196.2	Watermelon (97103) v2	medwmbB062
MELO3C034196.2	Wax gourd	medwgoB084