MELO3C034112.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C034112.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptiongirdin-like
Locationchr10 : 8813715 .. 8814986 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGGTACGACAGTTTGGGATCTAACATATCCAAGTTATGAGGCTTGGGTGTATTTCTTTGCAAAAATGACTTATGAAAATGTCATATGGAAGGCTCAATGGAAGCCTTTGAAGGCGGTGATATACAAATGTGGAAATTTTCATAGTGTCCCTTTGTTGGGACCATGAGGAGGTGTTAACTATACACCATTGTTAATTTTGTGTCAGGTGTGGCTCAAACAATTTATACCACCAACTCATAATCTATAATAGTCTGACTTTTGATATGATCTTGAAGATTTTCAAGGAAAAAAAACGTCGAGTAGTATGCACATGGAAATCTATGAGGAAGATAAAAGACAAAGGACACTACAAAGGAGTTATGAGTGGGTACGAGGCATGACAGGAAAATAGAATGAAGAATATAATAGTTAGCTTAAGGGGGGTAATTGAAGGGGTAAAAGAGACAAGCTTTGAACAACCAAATCAGTGGGTAGAGAATAGCATAGAATTAAAAAAGAAAAATCGACTGCTAGAGCAAAAGGACAAGAAACTTCGTAAAGATACAAATCAATGGATGGATCATGCAACCTATTTGCAGAAAGAACTTGAAAAGACCAAGAGTTTCTTAAGAAATCAAAGTTAGTTAGAAAATAATCTTGAGGCGTTAGATAAGGAGATGAGACGATGAATAAAGCAAATAGAAGTTTGAAAAATTTAGAAAGTGGGAAGGAATATTTTCTCGAGCTTGTCAATGATTTGAATTCATCAATTAGAAGATGGGAAGCACAGATACTAGATTTGGAAGCACACAATCATTCTCTGCATCAAAGTATTAATAGCATACATGTGAAGATGGCTGAGCGCTCTGAAGAGTATGAGATACTGAAAAATTATGTCGATTCCTTACACTCTCAACTTACTGCATTTCAAAATTCAAATGAGAGGATAGTGCAGGAATATGAGTCATTAAAGATGGATTATGTACAAATGAAGGTTTATTATGATATACAAATGAGAGATTTTCAGGTGCTAATGGAACATGTAGATCAAACGATTGAATTTCTCAGAATGACATCCATAAGAGCAAATGGTTTGCAGAATTGGCAGCTAATCTGAGGATTAATTTTTCTTAGTGCAACCTCGTGCAGATGATCTGAATAGATTCTTGAATATGATATGTAGATAACTTGGGCAGTTTGATTGTTTTCATTAATTGATCGTTTTACTATTAATGACAATAGGTTCATTACATTTTGTTTGCTTCTTGTTTTAGTTTGTCAAGTTTACATT

mRNA sequence

TTTGGTACGACAGTTTGGGATCTAACATATCCAAGTTATGAGGCTTGGGTGTATTTCTTTGCAAAAATGACTTATGAAAATGTCATATGGAAGGCTCAATGGAAGCCTTTGAAGGCGGTGATATACAAATGTGGAAATTTTCATAGTGTCCCTTTGTTGGGACCATGAGGAGGTGTTAACTATACACCATTGTTAATTTTGTGTCAGGTGTGGCTCAAACAATTTATACCACCAACTCATAATCTATAATAGTCTGACTTTTGATATGATCTTGAAGATTTTCAAGGAAAAAAAACGTCGAGTAGTATGCACATGGAAATCTATGAGGAAGATAAAAGACAAAGGACACTACAAAGGAGTTATGAGTGGGTACGAGGCATGACAGGAAAATAGAATGAAGAATATAATAGTTAGCTTAAGGGGGGTAATTGAAGGGGTAAAAGAGACAAGCTTTGAACAACCAAATCAGTGGGTAGAGAATAGCATAGAATTAAAAAAGAAAAATCGACTGCTAGAGCAAAAGGACAAGAAACTTCGTAAAGATACAAATCAATGGATGGATCATGCAACCTATTTGCAGAAAGAACTTGAAAAGACCAAGAGTTTCTTAAGAAATCAAAGTTAGTTAGAAAATAATCTTGAGGCGTTAGATAAGGAGATGAGACGATGAATAAAGCAAATAGAAGTTTGAAAAATTTAGAAAGTGGGAAGGAATATTTTCTCGAGCTTGTCAATGATTTGAATTCATCAATTAGAAGATGGGAAGCACAGATACTAGATTTGGAAGCACACAATCATTCTCTGCATCAAAGTATTAATAGCATACATGTGAAGATGGCTGAGCGCTCTGAAGAGTATGAGATACTGAAAAATTATGTCGATTCCTTACACTCTCAACTTACTGCATTTCAAAATTCAAATGAGAGGATAGTGCAGGAATATGAGTCATTAAAGATGGATTATGTACAAATGAAGGTTTATTATGATATACAAATGAGAGATTTTCAGGTGCTAATGGAACATGTAGATCAAACGATTGAATTTCTCAGAATGACATCCATAAGAGCAAATGGTTTGCAGAATTGGCAGCTAATCTGAGGATTAATTTTTCTTAGTGCAACCTCGTGCAGATGATCTGAATAGATTCTTGAATATGATATGTAGATAACTTGGGCAGTTTGATTGTTTTCATTAATTGATCGTTTTACTATTAATGACAATAGGTTCATTACATTTTGTTTGCTTCTTGTTTTAGTTTGTCAAGTTTACATT

Coding sequence (CDS)

ATGAATAAAGCAAATAGAAGTTTGAAAAATTTAGAAAGTGGGAAGGAATATTTTCTCGAGCTTGTCAATGATTTGAATTCATCAATTAGAAGATGGGAAGCACAGATACTAGATTTGGAAGCACACAATCATTCTCTGCATCAAAGTATTAATAGCATACATGTGAAGATGGCTGAGCGCTCTGAAGAGTATGAGATACTGAAAAATTATGTCGATTCCTTACACTCTCAACTTACTGCATTTCAAAATTCAAATGAGAGGATAGTGCAGGAATATGAGTCATTAAAGATGGATTATGTACAAATGAAGGTTTATTATGATATACAAATGAGAGATTTTCAGGTGCTAATGGAACATGTAGATCAAACGATTGAATTTCTCAGAATGACATCCATAAGAGCAAATGGTTTGCAGAATTGGCAGCTAATCTGA

Protein sequence

MNKANRSLKNLESGKEYFLELVNDLNSSIRRWEAQILDLEAHNHSLHQSINSIHVKMAERSEEYEILKNYVDSLHSQLTAFQNSNERIVQEYESLKMDYVQMKVYYDIQMRDFQVLMEHVDQTIEFLRMTSIRANGLQNWQLI
Homology
[Close]
BLAST of MELO3C034112.2 vs. NCBI nr
Match: XP_016900531.1 (PREDICTED: girdin-like [Cucumis melo])

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-05
Identity = 44/133 (33.08%), Postives = 50/133 (37.59%), Query Frame = 0 

Query: 8   LKNLESGKEYFLELVNDLNSSIRRWEAQILDLEAHNHSLHQSINSIHVKMAERSEEYEIL 67
           +K+LESGKEYFLE VND                                           
Sbjct: 214 IKDLESGKEYFLEFVNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 273

Query: 68  KNYVDSLHSQLTAFQNSNERIVQEYESLKMDYVQMKVYYDIQMRDFQVLMEHVDQTIEFL 127
                                         DYVQMKV YD+Q RDFQVL+E +DQTI+FL
Sbjct: 274 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDYVQMKVDYDLQTRDFQVLVERIDQTIKFL 333

Query: 128 RMTSIRANGLQNW 141
           RM S RAN    W
Sbjct: 334 RMVSKRANVFAEW 346

[Close]
BLAST of MELO3C034112.2 vs. TrEMBL
Match: tr|A0A1S4DX26|A0A1S4DX26_CUCME (girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05
Identity = 44/133 (33.08%), Postives = 50/133 (37.59%), Query Frame = 0 

Query: 8   LKNLESGKEYFLELVNDLNSSIRRWEAQILDLEAHNHSLHQSINSIHVKMAERSEEYEIL 67
           +K+LESGKEYFLE VND                                           
Sbjct: 214 IKDLESGKEYFLEFVNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 273

Query: 68  KNYVDSLHSQLTAFQNSNERIVQEYESLKMDYVQMKVYYDIQMRDFQVLMEHVDQTIEFL 127
                                         DYVQMKV YD+Q RDFQVL+E +DQTI+FL
Sbjct: 274 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDYVQMKVDYDLQTRDFQVLVERIDQTIKFL 333

Query: 128 RMTSIRANGLQNW 141
           RM S RAN    W
Sbjct: 334 RMVSKRANVFAEW 346

The following BLAST results are available for this feature:
BLAST of MELO3C034112.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016900531.11.6e-0533.08PREDICTED: girdin-like [Cucumis melo][more]
BLAST of MELO3C034112.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C034112.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C034112.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DX26|A0A1S4DX26_CUCME1.1e-0533.08girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034112.2.1MELO3C034112.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 22..42

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C034112.2Cucumber (Gy14) v2cgybmedB312
MELO3C034112.2Cucumber (Gy14) v1cgymedB285
MELO3C034112.2Cucurbita maxima (Rimu)cmamedB738
MELO3C034112.2Cucurbita maxima (Rimu)cmamedB741
MELO3C034112.2Cucurbita moschata (Rifu)cmomedB733
MELO3C034112.2Cucurbita moschata (Rifu)cmomedB736
MELO3C034112.2Cucurbita pepo (Zucchini)cpemedB436
MELO3C034112.2Cucurbita pepo (Zucchini)cpemedB440
MELO3C034112.2Wild cucumber (PI 183967)cpimedB352
MELO3C034112.2Cucumber (Chinese Long) v2cumedB350
MELO3C034112.2Bottle gourd (USVL1VR-Ls)lsimedB297
MELO3C034112.2Watermelon (Charleston Gray)medwcgB064
MELO3C034112.2Watermelon (97103) v1medwmB054
MELO3C034112.2Silver-seed gourdcarmedB0091
MELO3C034112.2Cucumber (Chinese Long) v3cucmedB370
MELO3C034112.2Cucumber (Chinese Long) v3cucmedB362
MELO3C034112.2Watermelon (97103) v2medwmbB061
MELO3C034112.2Wax gourdmedwgoB080
MELO3C034112.2Wax gourdmedwgoB078
MELO3C034112.2Wax gourdmedwgoB083