MELO3C034111.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C034111.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	glial fibrillary acidic protein-like
Location	chr10 : 8683778 .. 8684504 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGAATATTTAGTTCCAAACATAAAATTGAAGAAATATCATGATGATAAAGAAAAGGAATTAAAGCGGTTAAGAGAAATAAATTATGTTTTGGCAACAGAGAACAAAAAGTTAAGAGAAAAAGTCTAGACATGGATCTAACAAGCTGTTAGTACTCAAAGAGATTTGGATGAGGCGAAACGAAAGCAATGGAGCTAGAGAAGAATAACGATTCTTTAAACACTAAGGCAATCCAAATGAGAAAAAAGAATAAGAGGTTATTAAGGAACATTGCCGACTTGCATGAAGAGATGGAAGCGAAAAATGTATGCATTACAGATTTAAAATAGAAAATAAAAGATTGAATGGGATTGCTATAGAATTCCAAAATGCATTACATGAACAAGCCACATCATCTCAACAGATTGTTGTGGAGGTCGAGGTTCTATGGCAATCAGTTGAAGAATACAAGTCCCAAGTTATAGAAGCGGAAAGAAAAAATAGATTTCTACAAGAAGCCGTTAACAGTTCTGAAGGCCAGCTGCTGATATGTCATAAGGCAAGGAAGGTCGCAACAAATGACTATGCTCAATTAATAGAAATATATCAAGAAATGTCAATAGATTTCATGATATGGAGGAATGAGTACAACACATTGAGGCGCAAGTATGATGGTGCTAGAGGTCAGATGGAACAAGGTCCTGAAAAATTAAGACAAATGGCTAGGATGAATGATCAATTCTTA

mRNA sequence

ATGTTAGAATATTTAGTTCCAAACATAAAATTGAAGAAATATCATGATGATAAAGAAAAGGAATTAAAGCGGTTAAGAGAAATAAATTATGTTTTGGCAACAGAGAACAAAAAGTTAAGAGAAAAAGTCTAGACATGGATCTAACAAGCTGTTAGTACTCAAAGAGATTTGGATGAGGCGAAACGAAAGCAATGGAGCTAGAGAAGAATAACGATTCTTTAAACACTAAGGCAATCCAAATGAGAAAAAAGAATAAGAGGTTATTAAGGAACATTGCCGACTTGCATGAAGAGATGGAAGCGAAAAATATTGTTGTGGAGGTCGAGGTTCTATGGCAATCAGTTGAAGAATACAAGTCCCAAGTTATAGAAGCGGAAAGAAAAAATAGATTTCTACAAGAAGCCGTTAACAGTTCTGAAGGCCAGCTGCTGATATGTCATAAGGCAAGGAAGGTCGCAACAAATGACTATGCTCAATTAATAGAAATATATCAAGAAATGTCAATAGATTTCATGATATGGAGGAATGAGTACAACACATTGAGGCGCAAGTATGATGGTGCTAGAGGTCAGATGGAACAAGGTCCTGAAAAATTAAGACAAATGGCTAGGATGAATGATCAATTCTTA

Coding sequence (CDS)

ATGGAGCTAGAGAAGAATAACGATTCTTTAAACACTAAGGCAATCCAAATGAGAAAAAAGAATAAGAGGTTATTAAGGAACATTGCCGACTTGCATGAAGAGATGGAAGCGAAAAATATTGTTGTGGAGGTCGAGGTTCTATGGCAATCAGTTGAAGAATACAAGTCCCAAGTTATAGAAGCGGAAAGAAAAAATAGATTTCTACAAGAAGCCGTTAACAGTTCTGAAGGCCAGCTGCTGATATGTCATAAGGCAAGGAAGGTCGCAACAAATGACTATGCTCAATTAATAGAAATATATCAAGAAATGTCAATAGATTTCATGATATGGAGGAATGAGTACAACACATTGAGGCGCAAGTATGATGGTGCTAGAGGTCAGATGGAACAAGGTCCTGAAAAATTAAGACAAATGGCTAGGATGAATGATCAATTCTTA

Protein sequence

MELEKNNDSLNTKAIQMRKKNKRLLRNIADLHEEMEAKNIVVEVEVLWQSVEEYKSQVIEAERKNRFLQEAVNSSEGQLLICHKARKVATNDYAQLIEIYQEMSIDFMIWRNEYNTLRRKYDGARGQMEQGPEKLRQMARMNDQFL

Homology

[Close]

BLAST of MELO3C034111.2 vs. NCBI nr
Match: XP_008464352.1 (PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo])

HSP 1 Score: 190.7 bits (483), Expect = 3.6e-45
Identity = 105/160 (65.62%), Postives = 125/160 (78.12%), Query Frame = 0


Query: 1   MELEKNNDSLNTKAIQMRKKNKRLLRNIADLHEEMEA---------------KNIVVEVE 60
           +ELEK NDSLNT+AIQ+RKKNKRLLRNIA+LHEE+EA               +   + +E
Sbjct: 64  LELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAEKEFQNALHEQAISSQQTAMGIE 123

Query: 61  VLWQSVEEYKSQVIEAERKNRFLQEAVNSSEGQLLICHKARKVATNDYAQLIEIYQEMSI 120
           VL  S+EEYKSQ+IEAE KN FLQ+AVNSSE QLLIC KAR+V T+DYAQL+E YQEMSI
Sbjct: 124 VLQHSIEEYKSQLIEAESKNNFLQKAVNSSESQLLICRKAREVITDDYAQLMEKYQEMSI 183

Query: 121 DFMIWRNEYNTLRRKYDGARGQMEQGPEKLRQMARMNDQF 146
           DFM+W++EY TLRRKYD A  +ME+G EKLRQMA + DQF
Sbjct: 184 DFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMASVADQF 223

[Close]

BLAST of MELO3C034111.2 vs. TrEMBL
Match: tr|A0A1S3CLQ1|A0A1S3CLQ1_CUCME (glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.4e-45
Identity = 105/160 (65.62%), Postives = 125/160 (78.12%), Query Frame = 0


Query: 1   MELEKNNDSLNTKAIQMRKKNKRLLRNIADLHEEMEA---------------KNIVVEVE 60
           +ELEK NDSLNT+AIQ+RKKNKRLLRNIA+LHEE+EA               +   + +E
Sbjct: 64  LELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAEKEFQNALHEQAISSQQTAMGIE 123

Query: 61  VLWQSVEEYKSQVIEAERKNRFLQEAVNSSEGQLLICHKARKVATNDYAQLIEIYQEMSI 120
           VL  S+EEYKSQ+IEAE KN FLQ+AVNSSE QLLIC KAR+V T+DYAQL+E YQEMSI
Sbjct: 124 VLQHSIEEYKSQLIEAESKNNFLQKAVNSSESQLLICRKAREVITDDYAQLMEKYQEMSI 183

Query: 121 DFMIWRNEYNTLRRKYDGARGQMEQGPEKLRQMARMNDQF 146
           DFM+W++EY TLRRKYD A  +ME+G EKLRQMA + DQF
Sbjct: 184 DFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMASVADQF 223

The following BLAST results are available for this feature:

BLAST of MELO3C034111.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464352.1	3.6e-45	65.63	PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo]	[more]

BLAST of MELO3C034111.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C034111.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C034111.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CLQ1\|A0A1S3CLQ1_CUCME	2.4e-45	65.63	glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034111.2.1	MELO3C034111.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 51..78
None	No IPR available	COILS	Coil	Coil	coord: 7..41

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C034111.2	Cucumber (Gy14) v2	cgybmedB312
MELO3C034111.2	Cucumber (Gy14) v1	cgymedB285
MELO3C034111.2	Cucurbita maxima (Rimu)	cmamedB738
MELO3C034111.2	Cucurbita maxima (Rimu)	cmamedB741
MELO3C034111.2	Cucurbita moschata (Rifu)	cmomedB733
MELO3C034111.2	Cucurbita moschata (Rifu)	cmomedB736
MELO3C034111.2	Cucurbita pepo (Zucchini)	cpemedB436
MELO3C034111.2	Cucurbita pepo (Zucchini)	cpemedB440
MELO3C034111.2	Wild cucumber (PI 183967)	cpimedB352
MELO3C034111.2	Cucumber (Chinese Long) v2	cumedB350
MELO3C034111.2	Bottle gourd (USVL1VR-Ls)	lsimedB297
MELO3C034111.2	Watermelon (Charleston Gray)	medwcgB064
MELO3C034111.2	Watermelon (97103) v1	medwmB054
MELO3C034111.2	Silver-seed gourd	carmedB0091
MELO3C034111.2	Cucumber (Chinese Long) v3	cucmedB370
MELO3C034111.2	Cucumber (Chinese Long) v3	cucmedB362
MELO3C034111.2	Watermelon (97103) v2	medwmbB061
MELO3C034111.2	Wax gourd	medwgoB080
MELO3C034111.2	Wax gourd	medwgoB078
MELO3C034111.2	Wax gourd	medwgoB083