MELO3C034109.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C034109.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	TOX high mobility group box family member 4-A, putative isoform 4
Location	chr10 : 8640264 .. 8640509 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAACATTCCACCACATGGAAGAAAATGAAGAAAGTATTAAGAACAAAGAGAAAGTGAAGAGCTTACTTCTTCTATTACAGACAAAATATGAAGAAAGAGATGAAGCAAGAGATCAACTGCAGAAGGAAACATGTATGCTAAGGAGTACTGGAACTAATTAACATGGAAAATGGTGGTCGTTGTCAAGTTACTATGATGTTGTAAAAGGAGAAGGAAACAATAATGTCAATCCTACTATGATATTA

mRNA sequence

ATAACATTCCACCACATGGAAGAAAATGAAGAAAGTATTAAGAACAAAGAGAAAGTGAAGAGCTTACTTCTTCTATTACAGACAAAATATGAAGAAAGAGATGAAGCAAGAGATCAACTGCAGAAGGAAACATGTATGCTAAGGAGTACTGGAACTAATTAACATGGAAAATGGTGGTCGTTGTCAAGTTACTATGATGTTGTAAAAGGAGAAGGAAACAATAATGTCAATCCTACTATGATATTA

Coding sequence (CDS)

ATGGAAGAAAATGAAGAAAGTATTAAGAACAAAGAGAAAGTGAAGAGCTTACTTCTTCTATTACAGACAAAATATGAAGAAAGAGATGAAGCAAGAGATCAACTGCAGAAGGAAACATGTATGCTAAGGAGTACTGGAACTAATTAA

Protein sequence

MEENEESIKNKEKVKSLLLLLQTKYEERDEARDQLQKETCMLRSTGTN

Homology

[Close]

BLAST of MELO3C034109.2 vs. NCBI nr
Match: XP_022148299.1 (uncharacterized protein LOC111016987 [Momordica charantia])

HSP 1 Score: 62.4 bits (150), Expect = 4.9e-07
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1  MEENEESIKNKEKVKSLLLLLQTKYEERDEARDQLQK 38
          ME NEESIKNKEKVKSLLLLLQ  YEERDEARDQLQK
Sbjct: 61 MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQK 97

[Close]

BLAST of MELO3C034109.2 vs. NCBI nr
Match: XP_022943940.1 (uncharacterized protein LOC111448511 [Cucurbita moschata])

HSP 1 Score: 62.4 bits (150), Expect = 4.9e-07
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1  MEENEESIKNKEKVKSLLLLLQTKYEERDEARDQLQK 38
          ME NEESIKNKEKVKSLLLLLQ  YEERDEARDQLQK
Sbjct: 47 MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQK 83

[Close]

BLAST of MELO3C034109.2 vs. NCBI nr
Match: XP_022948173.1 (uncharacterized protein LOC111451829 [Cucurbita moschata])

HSP 1 Score: 62.4 bits (150), Expect = 4.9e-07
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1  MEENEESIKNKEKVKSLLLLLQTKYEERDEARDQLQK 38
          ME NEESIKNKEKVKSLLLLLQ  YEERDEARDQLQK
Sbjct: 61 MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQK 97

[Close]

BLAST of MELO3C034109.2 vs. NCBI nr
Match: XP_022986908.1 (uncharacterized protein LOC111484506 [Cucurbita maxima])

HSP 1 Score: 62.4 bits (150), Expect = 4.9e-07
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1  MEENEESIKNKEKVKSLLLLLQTKYEERDEARDQLQK 38
          ME NEESIKNKEKVKSLLLLLQ  YEERDEARDQLQK
Sbjct: 47 MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQK 83

[Close]

BLAST of MELO3C034109.2 vs. NCBI nr
Match: XP_023007333.1 (uncharacterized protein LOC111499860 isoform X2 [Cucurbita maxima])

HSP 1 Score: 62.4 bits (150), Expect = 4.9e-07
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1  MEENEESIKNKEKVKSLLLLLQTKYEERDEARDQLQK 38
          ME NEESIKNKEKVKSLLLLLQ  YEERDEARDQLQK
Sbjct: 12 MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQK 48

[Close]

BLAST of MELO3C034109.2 vs. TrEMBL
Match: tr|A0A0A0KHV7|A0A0A0KHV7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G303220 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.2e-07
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1  MEENEESIKNKEKVKSLLLLLQTKYEERDEARDQLQK 38
          ME NEES+KNKEKVKSLLLLLQ  YEERDEARDQLQK
Sbjct: 33 MEANEESVKNKEKVKSLLLLLQAAYEERDEARDQLQK 69

[Close]

BLAST of MELO3C034109.2 vs. TrEMBL
Match: tr|A0A1S3BKE0|A0A1S3BKE0_CUCME (Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103490578 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-06
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1  MEENEESIKNKEKVKSLLLLLQTKYEERDEARDQLQK 38
          ME +EESIKNKEKVKSLLLLLQ  YEERDEARDQLQK
Sbjct: 33 MEASEESIKNKEKVKSLLLLLQAAYEERDEARDQLQK 69

The following BLAST results are available for this feature:

BLAST of MELO3C034109.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148299.1	4.9e-07	91.89	uncharacterized protein LOC111016987 [Momordica charantia]	[more]
XP_022943940.1	4.9e-07	91.89	uncharacterized protein LOC111448511 [Cucurbita moschata]	[more]
XP_022948173.1	4.9e-07	91.89	uncharacterized protein LOC111451829 [Cucurbita moschata]	[more]
XP_022986908.1	4.9e-07	91.89	uncharacterized protein LOC111484506 [Cucurbita maxima]	[more]
XP_023007333.1	4.9e-07	91.89	uncharacterized protein LOC111499860 isoform X2 [Cucurbita maxima]	[more]

BLAST of MELO3C034109.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C034109.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C034109.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KHV7\|A0A0A0KHV7_CUCSA	4.2e-07	89.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G303220 PE=4 SV=1	[more]
tr\|A0A1S3BKE0\|A0A1S3BKE0_CUCME	1.2e-06	89.19	Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103490578 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034109.2.1	MELO3C034109.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 18..38

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C034109.2	Wax gourd	medwgoB080
MELO3C034109.2	Wax gourd	medwgoB078
MELO3C034109.2	Wax gourd	medwgoB083
MELO3C034109.2	Cucumber (Gy14) v2	cgybmedB312
MELO3C034109.2	Cucumber (Gy14) v1	cgymedB285
MELO3C034109.2	Cucurbita maxima (Rimu)	cmamedB738
MELO3C034109.2	Cucurbita maxima (Rimu)	cmamedB741
MELO3C034109.2	Cucurbita moschata (Rifu)	cmomedB733
MELO3C034109.2	Cucurbita moschata (Rifu)	cmomedB736
MELO3C034109.2	Cucurbita pepo (Zucchini)	cpemedB436
MELO3C034109.2	Cucurbita pepo (Zucchini)	cpemedB440
MELO3C034109.2	Wild cucumber (PI 183967)	cpimedB352
MELO3C034109.2	Cucumber (Chinese Long) v2	cumedB350
MELO3C034109.2	Bottle gourd (USVL1VR-Ls)	lsimedB297
MELO3C034109.2	Watermelon (Charleston Gray)	medwcgB064
MELO3C034109.2	Watermelon (97103) v1	medwmB054
MELO3C034109.2	Silver-seed gourd	carmedB0091
MELO3C034109.2	Cucumber (Chinese Long) v3	cucmedB370
MELO3C034109.2	Cucumber (Chinese Long) v3	cucmedB362
MELO3C034109.2	Watermelon (97103) v2	medwmbB061