MELO3C034108.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C034108.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	girdin-like
Location	chr10 : 8517445 .. 8517854 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTTTGGGATCTAACATATCCAAGGAAGGAGGCTTGGTTGTCTTTCTTTGCAAAACTAATTTCTGAAAATGTCATATAGAAGGCTCAATGGATGCCTTTGAAGGTGGTGATATATAGATGTGAAGATTTTCACAGTGTGCCTTTGTTGGGACCATGGGTAGGGGTTAACTATACACCATTGTTAGTTTTGCGTCAGGTGTGGCTCAAACAGTTTATACCACTAACTCATAATCTGCAAGAGTCTGACTTTTCATACGATTCTGGAGATTGTCAAGGAAAAAACGTTGAGCAGTATGCGCATGGAAATATGTAAGGAAGATAAAAGACAAAGGACATTACGAAGAAGTTACTAGTGGGTACGAGGCATAGCAGGAAAACAGAAGGAAGAATATAATAGTTATCTCA

mRNA sequence

ATGGCAGTTTGGGATCTAACATATCCAAGGAAGGAGGCTTGGTTGTCTTTCTTTGCAAAACTAATTTCTGAAAATGTCATATAGAAGGCTCAATGGATGCCTTTGAAGGTGGTGATATATAGATGTGAAGATTTTCACAGTGTGCCTTTGTTGGGACCATGGGTAGGGGTTAACTATACACCATTGTTAGTTTTGCGTCAGGTGTGGCTCAAACAGTTTATACCACTAACTCATAATCTGCAAGAGTCTGACTTTTCATACGATTCTGGAGATTGTCAAGGAAAAAACGTTGAGCAGTATGCGCATGGAAATATGTAAGGAAGATAAAAGACAAAGGACATTACGAAGAAGTTACTAGTGGGTACGAGGCATAGCAGGAAAACAGAAGGAAGAATATAATAGTTATCTCA

Coding sequence (CDS)

ATGCCTTTGAAGGTGGTGATATATAGATGTGAAGATTTTCACAGTGTGCCTTTGTTGGGACCATGGGTAGGGGTTAACTATACACCATTGTTAGTTTTGCGTCAGGTGTGGCTCAAACAGTTTATACCACTAACTCATAATCTGCAAGAGTCTGACTTTTCATACGATTCTGGAGATTGTCAAGGAAAAAACGTTGAGCAGTATGCGCATGGAAATATGTAA

Protein sequence

MPLKVVIYRCEDFHSVPLLGPWVGVNYTPLLVLRQVWLKQFIPLTHNLQESDFSYDSGDCQGKNVEQYAHGNM

Homology

[Close]

BLAST of MELO3C034108.2 vs. NCBI nr
Match: XP_016900531.1 (PREDICTED: girdin-like [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 6.0e-25
Identity = 56/63 (88.89%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1  MPLKVVIYRCEDFHSVPLLGPWVGVNYTPLLVLRQVWLKQFIPLTHNLQESDFSYDSGDC 60
          MPLK VIYRC DFHSVPLLGPW GVNY PLLVLRQVWLKQFIP THNLQESDFSYD  DC
Sbjct: 1  MPLKAVIYRCGDFHSVPLLGPWGGVNYLPLLVLRQVWLKQFIPPTHNLQESDFSYDLEDC 60

Query: 61 QGK 64
          QGK
Sbjct: 61 QGK 63

[Close]

BLAST of MELO3C034108.2 vs. NCBI nr
Match: XP_022147190.1 (uncharacterized protein LOC111016201 [Momordica charantia])

HSP 1 Score: 87.4 bits (215), Expect = 2.1e-14
Identity = 36/63 (57.14%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1   MPLKVVIYRCEDFHSVPLLGPWVGVNYTPLLVLRQVWLKQFIPLTHNLQESDFSYDSGDC 60
           M  K ++YRC  FHS+ LLGPW  V+Y PL+VLRQ+W++QFIP TH+L+ S+F+YD G C
Sbjct: 325 MSTKPMMYRCGKFHSLSLLGPWGCVSYAPLMVLRQIWVRQFIPATHDLRNSEFAYDIGFC 384

Query: 61  QGK 64
           + K
Sbjct: 385 KNK 387

[Close]

BLAST of MELO3C034108.2 vs. NCBI nr
Match: XP_022150759.1 (uncharacterized protein LOC111018820 [Momordica charantia])

HSP 1 Score: 82.4 bits (202), Expect = 6.9e-13
Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 1   MPLKVVIYRCEDFHSVPLLGPWVGVNYTPLLVLRQVWLKQFIPLTHNLQESDFSYDSGDC 60
           M  K ++YRC  FHS+PLLGP   V+Y PL+VLRQ+W++QFIP TH+L+ S+F+YD   C
Sbjct: 217 MSTKPMMYRCGKFHSLPLLGPCGCVSYAPLMVLRQIWVRQFIPATHDLRNSEFAYDVRFC 276

Query: 61  QGK 64
           + K
Sbjct: 277 KNK 279

[Close]

BLAST of MELO3C034108.2 vs. NCBI nr
Match: XP_016694384.1 (PREDICTED: uncharacterized protein LOC107910990 [Gossypium hirsutum])

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 6   VIYRCEDFHSVPLLGPWVGVNYTPLLVLRQVWLKQFIPLTHNLQESDFSYDSGDCQGKNV 65
           ++YRC DF  VPLLG W  V Y PLLVLRQ   +QF+P+T  L E +FSY   +  GK  
Sbjct: 322 ILYRCGDFDWVPLLGIWGAVGYAPLLVLRQYKSRQFVPVTQGLAECEFSYKGNNYMGKIR 381

Query: 66  EQYA 70
           E Y+
Sbjct: 382 EMYS 385

[Close]

BLAST of MELO3C034108.2 vs. NCBI nr
Match: XP_017618057.1 (PREDICTED: uncharacterized protein LOC108462643 [Gossypium arboreum])

HSP 1 Score: 70.1 bits (170), Expect = 3.6e-09
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 6   VIYRCEDFHSVPLLGPWVGVNYTPLLVLRQVWLKQFIPLTHNLQESDFSYDSGD 60
           V+YRC  F+ VPLLG W  + Y PLLVLRQ  L+QF+P TH L +S+F+Y   D
Sbjct: 124 VLYRCGSFNWVPLLGIWGAIGYAPLLVLRQFGLRQFVPATHGLTQSEFAYRGAD 177

[Close]

BLAST of MELO3C034108.2 vs. TrEMBL
Match: tr|A0A1S4DX26|A0A1S4DX26_CUCME (girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.0e-25
Identity = 56/63 (88.89%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1  MPLKVVIYRCEDFHSVPLLGPWVGVNYTPLLVLRQVWLKQFIPLTHNLQESDFSYDSGDC 60
          MPLK VIYRC DFHSVPLLGPW GVNY PLLVLRQVWLKQFIP THNLQESDFSYD  DC
Sbjct: 1  MPLKAVIYRCGDFHSVPLLGPWGGVNYLPLLVLRQVWLKQFIPPTHNLQESDFSYDLEDC 60

Query: 61 QGK 64
          QGK
Sbjct: 61 QGK 63

[Close]

BLAST of MELO3C034108.2 vs. TrEMBL
Match: tr|A0A1U8K1F0|A0A1U8K1F0_GOSHI (uncharacterized protein LOC107910990 OS=Gossypium hirsutum OX=3635 GN=LOC107910990 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.1e-10
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 6   VIYRCEDFHSVPLLGPWVGVNYTPLLVLRQVWLKQFIPLTHNLQESDFSYDSGDCQGKNV 65
           ++YRC DF  VPLLG W  V Y PLLVLRQ   +QF+P+T  L E +FSY   +  GK  
Sbjct: 322 ILYRCGDFDWVPLLGIWGAVGYAPLLVLRQYKSRQFVPVTQGLAECEFSYKGNNYMGKIR 381

Query: 66  EQYA 70
           E Y+
Sbjct: 382 EMYS 385

[Close]

BLAST of MELO3C034108.2 vs. TrEMBL
Match: tr|A0A1U8LPD9|A0A1U8LPD9_GOSHI (uncharacterized protein LOC107929524 OS=Gossypium hirsutum OX=3635 GN=LOC107929524 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.1e-09
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 6   VIYRCEDFHSVPLLGPWVGVNYTPLLVLRQVWLKQFIPLTHNLQESDFSYDSGD 60
           ++YRC  F+ VPLLG W  + Y PLLVLRQ  L+QF+P TH L +S+F+Y   D
Sbjct: 252 ILYRCGSFNWVPLLGIWGAIGYAPLLVLRQFGLRQFVPATHGLTQSEFAYREAD 305

[Close]

BLAST of MELO3C034108.2 vs. TrEMBL
Match: tr|A0A1U8PI65|A0A1U8PI65_GOSHI (uncharacterized protein LOC107959333 OS=Gossypium hirsutum OX=3635 GN=LOC107959333 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.2e-09
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 6   VIYRCEDFHSVPLLGPWVGVNYTPLLVLRQVWLKQFIPLTHNLQESDFSYDSGDCQGKNV 65
           ++YRC  +  VPLLG W  V Y PL VLRQ   +QFIP+TH L +S FSY   D + K+ 
Sbjct: 213 ILYRCGSYDWVPLLGIWGAVGYVPLFVLRQYRSRQFIPITHGLTQSGFSYGEKDSKKKSR 272

Query: 66  EQY 69
           E Y
Sbjct: 273 EIY 275

[Close]

BLAST of MELO3C034108.2 vs. TrEMBL
Match: tr|A0A1U8J0Z5|A0A1U8J0Z5_GOSHI (uncharacterized protein LOC107902327 OS=Gossypium hirsutum OX=3635 GN=LOC107902327 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.2e-09
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 6   VIYRCEDFHSVPLLGPWVGVNYTPLLVLRQVWLKQFIPLTHNLQESDFSYDSGDCQGK 64
           ++YRC  F  VPLLG W  + Y PLLVLRQ  L+QF+P TH L +S+F+Y   D + K
Sbjct: 151 ILYRCGSFDWVPLLGIWGAIGYAPLLVLRQFGLRQFVPATHGLIQSEFAYRGADYKKK 208

The following BLAST results are available for this feature:

BLAST of MELO3C034108.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900531.1	6.0e-25	88.89	PREDICTED: girdin-like [Cucumis melo]	[more]
XP_022147190.1	2.1e-14	57.14	uncharacterized protein LOC111016201 [Momordica charantia]	[more]
XP_022150759.1	6.9e-13	55.56	uncharacterized protein LOC111018820 [Momordica charantia]	[more]
XP_016694384.1	1.2e-09	51.56	PREDICTED: uncharacterized protein LOC107910990 [Gossypium hirsutum]	[more]
XP_017618057.1	3.6e-09	55.56	PREDICTED: uncharacterized protein LOC108462643 [Gossypium arboreum]	[more]

BLAST of MELO3C034108.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C034108.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C034108.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DX26\|A0A1S4DX26_CUCME	4.0e-25	88.89	girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1	[more]
tr\|A0A1U8K1F0\|A0A1U8K1F0_GOSHI	8.1e-10	51.56	uncharacterized protein LOC107910990 OS=Gossypium hirsutum OX=3635 GN=LOC1079109...	[more]
tr\|A0A1U8LPD9\|A0A1U8LPD9_GOSHI	3.1e-09	53.70	uncharacterized protein LOC107929524 OS=Gossypium hirsutum OX=3635 GN=LOC1079295...	[more]
tr\|A0A1U8PI65\|A0A1U8PI65_GOSHI	5.2e-09	50.79	uncharacterized protein LOC107959333 OS=Gossypium hirsutum OX=3635 GN=LOC1079593...	[more]
tr\|A0A1U8J0Z5\|A0A1U8J0Z5_GOSHI	5.2e-09	51.72	uncharacterized protein LOC107902327 OS=Gossypium hirsutum OX=3635 GN=LOC1079023...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034108.2.1	MELO3C034108.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C034108.2	Bottle gourd (USVL1VR-Ls)	lsimedB297
MELO3C034108.2	Watermelon (Charleston Gray)	medwcgB064
MELO3C034108.2	Watermelon (97103) v1	medwmB054
MELO3C034108.2	Silver-seed gourd	carmedB0091
MELO3C034108.2	Cucumber (Chinese Long) v3	cucmedB370
MELO3C034108.2	Cucumber (Chinese Long) v3	cucmedB362
MELO3C034108.2	Watermelon (97103) v2	medwmbB061
MELO3C034108.2	Wax gourd	medwgoB080
MELO3C034108.2	Wax gourd	medwgoB078
MELO3C034108.2	Wax gourd	medwgoB083
MELO3C034108.2	Cucumber (Gy14) v2	cgybmedB312
MELO3C034108.2	Cucumber (Gy14) v1	cgymedB285
MELO3C034108.2	Cucurbita maxima (Rimu)	cmamedB738
MELO3C034108.2	Cucurbita maxima (Rimu)	cmamedB741
MELO3C034108.2	Cucurbita moschata (Rifu)	cmomedB733
MELO3C034108.2	Cucurbita moschata (Rifu)	cmomedB736
MELO3C034108.2	Cucurbita pepo (Zucchini)	cpemedB436
MELO3C034108.2	Cucurbita pepo (Zucchini)	cpemedB440
MELO3C034108.2	Wild cucumber (PI 183967)	cpimedB352
MELO3C034108.2	Cucumber (Chinese Long) v2	cumedB350