MELO3C034107.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C034107.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptiongirdin-like
Locationchr10 : 8516592 .. 8517841 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTAACATATCCAAGGAAGGAGGCTTGGTTGTCTTTCTTTGCAAAACTAATTTCTGAAAATGTCATATAGAAGGCTCAATGGATGCCTTTGAAGGTGGTGATATATAGATGTGAAGATTTTCACAGTGTGCCTTTGTTGGGACCATGGGTAGGGGTTAACTATACACCATTGTTAGTTTTGCGTCAGGTGTGGCTCAAACAGTTTATACCACTAACTCATAATCTGCAAGAGTCTGACTTTTCATACGATTCTGGAGATTGTCAAGGAAAAAACGTTGAGCAGTATGCGCATGGAAATATGTAAGGAAGATAAAAGACAAAGGACATTACGAAGAAGTTACTAGTGGGTACGAGGCATAGCAGGAAAACAGAAGGAAGAATATAATAGTTATCTCAATGGAAGTAGTTGAAAGGGGAAAATAGACATGCTTCGAACAACCAAATCAGTGGGTTGAGAAGAGCATAGAACTAGAAGAGAAAAATCGACTATTAGAGCAAGAGAACGAGAAACTTCGTAAAGAGATAAGTAAATGGATGGATCATGCGACTTATTTGCAGAACGAACTAGAAAAGACTAAGAGTTTCTTAAGAAATCAAGATAAGTTAGAAAAGAATCTTGAGACGTTAGATAAAGAGATGAGGCGAATGAATAAAGCAAATAGAAGTTTGGAAAATGAAAAGACAACATTACAAGCAACAGTGGGATCGCAAGATGAATATATTAAAGATTTAGAAAGTGGGAAGGAATATTTTCTCGAGCTTGTCAATGATTTGAATACATCAATTGGAAAACGAGAAATACAAATAATGGATTTGGAAGTACATAATCATTCTTTGCGTCGAACTGTTGATAGCCTACATCTGAAGATGGCCGAGCGCTCTAAAGAGTATGAGATACTGAAAAATTATGCCAATTCCTTACACTATCAACATACTGCATTTCAAAATTCAAGTGAGAGGATAGTGCAGGACTATGAGTCATTGAAGATGGATTGCGTGCAAATGAAATTTGATTATGATCTACAAATGAAAGATTTTCAAGTGCTAGTGGAACGTGTAGATCAGACGATTGAATTTCTCAAAATGGTGTCCAAAAGAGTAAATGGTTTTGCATAATTGGCAGCTAATTTGAGGGTTATTTTTTTCTCAATGCAACCTCATGCAGATGATCTAAATAGATTCTTGAAGATGATATGCAGAGCACTCAGACATTTTGGTCGTTTTCATTAATTGTTCATTCTGCTATTGA

mRNA sequence

ATCTAACATATCCAAGGAAGGAGGCTTGGTTGTCTTTCTTTGCAAAACTAATTTCTGAAAATGTCATATAGAAGGCTCAATGGATGCCTTTGAAGGTGGTGATATATAGATGTGAAGATTTTCACAGTGTGCCTTTGTTGGGACCATGGGTAGGGGTTAACTATACACCATTGTTAGTTTTGCGTCAGGTGTGGCTCAAACAGTTTATACCACTAACTCATAATCTGCAAGAGTCTGACTTTTCATACGATTCTGGAGATTGTCAAGGAAAAAACGTTGAGCAGTATGCGCATGGAAATATGTAAGGAAGATAAAAGACAAAGGACATTACGAAGAAGTTACTAGTGGGTACGAGGCATAGCAGGAAAACAGAAGGAAGAATATAATAGTTATCTCAATGGAAGTAGTTGAAAGGGGAAAATAGACATGCTTCGAACAACCAAATCAGTGGGTTGAGAAGAGCATAGAACTAGAAGAGAAAAATCGACTATTAGAGCAAGAGAACGAGAAACTTCGTAAAGAGATAAGTAAATGGATGGATCATGCGACTTATTTGCAGAACGAACTAGAAAAGACTAAGAGTTTCTTAAGAAATCAAGATAAGTTAGAAAAGAATCTTGAGACGTTAGATAAAGAGATGAGGCGAATGAATAAAGCAAATAGAAGTTTGGAAAATGAAAAGACAACATTACAAGCAACAGTGGGATCGCAAGATGAATATATTAAAGATTTAGAAAGTGGGAAGGAATATTTTCTCGAGCTTGTCAATGATTTGAATACATCAATTGGAAAACGAGAAATACAAATAATGGATTTGGAAGTACATAATCATTCTTTGCGTCGAACTGTTGATAGCCTACATCTGAAGATGGCCGAGCGCTCTAAAGAGTATGAGATACTGAAAAATTATGCCAATTCCTTACACTATCAACATACTGCATTTCAAAATTCAAGTGAGAGGATAGTGCAGGACTATGAGTCATTGAAGATGGATTGCGTGCAAATGAAATTTGATTATGATCTACAAATGAAAGATTTTCAAGTGCTAGTGGAACGTGTAGATCAGACGATTGAATTTCTCAAAATGGTGTCCAAAAGAGTAAATGGTTTTGCATAATTGGCAGCTAATTTGAGGGTTATTTTTTTCTCAATGCAACCTCATGCAGATGATCTAAATAGATTCTTGAAGATGATATGCAGAGCACTCAGACATTTTGGTCGTTTTCATTAATTGTTCATTCTGCTATTGA

Coding sequence (CDS)

ATGGATCATGCGACTTATTTGCAGAACGAACTAGAAAAGACTAAGAGTTTCTTAAGAAATCAAGATAAGTTAGAAAAGAATCTTGAGACGTTAGATAAAGAGATGAGGCGAATGAATAAAGCAAATAGAAGTTTGGAAAATGAAAAGACAACATTACAAGCAACAGTGGGATCGCAAGATGAATATATTAAAGATTTAGAAAGTGGGAAGGAATATTTTCTCGAGCTTGTCAATGATTTGAATACATCAATTGGAAAACGAGAAATACAAATAATGGATTTGGAAGTACATAATCATTCTTTGCGTCGAACTGTTGATAGCCTACATCTGAAGATGGCCGAGCGCTCTAAAGAGTATGAGATACTGAAAAATTATGCCAATTCCTTACACTATCAACATACTGCATTTCAAAATTCAAGTGAGAGGATAGTGCAGGACTATGAGTCATTGAAGATGGATTGCGTGCAAATGAAATTTGATTATGATCTACAAATGAAAGATTTTCAAGTGCTAGTGGAACGTGTAGATCAGACGATTGAATTTCTCAAAATGGTGTCCAAAAGAGTAAATGGTTTTGCATAA

Protein sequence

MDHATYLQNELEKTKSFLRNQDKLEKNLETLDKEMRRMNKANRSLENEKTTLQATVGSQDEYIKDLESGKEYFLELVNDLNTSIGKREIQIMDLEVHNHSLRRTVDSLHLKMAERSKEYEILKNYANSLHYQHTAFQNSSERIVQDYESLKMDCVQMKFDYDLQMKDFQVLVERVDQTIEFLKMVSKRVNGFA
Homology
[Close]
BLAST of MELO3C034107.2 vs. NCBI nr
Match: XP_016900531.1 (PREDICTED: girdin-like [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 3.7e-13
Identity = 90/140 (64.29%), Postives = 95/140 (67.86%), Query Frame = 0 

Query: 54  ATVGSQDEYIKDLESGKEYFLELVNDLNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 113
           ATVGS+DEYIKDLESGKEYFLE VND   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 205 ATVGSEDEYIKDLESGKEYFLEFVNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 264

Query: 114 XXXKEYEILKNYANSLHYQHTAFQNSSERIVQDYESLKMDCVQMKFDYDLQMKDFQVLVE 173
           XXX                                    D VQMK DYDLQ +DFQVLVE
Sbjct: 265 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDYVQMKVDYDLQTRDFQVLVE 324

Query: 174 RVDQTIEFLKMVSKRVNGFA 194
           R+DQTI+FL+MVSKR N FA
Sbjct: 325 RIDQTIKFLRMVSKRANVFA 344

[Close]
BLAST of MELO3C034107.2 vs. TrEMBL
Match: tr|A0A1S4DX26|A0A1S4DX26_CUCME (girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.4e-13
Identity = 90/140 (64.29%), Postives = 95/140 (67.86%), Query Frame = 0 

Query: 54  ATVGSQDEYIKDLESGKEYFLELVNDLNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 113
           ATVGS+DEYIKDLESGKEYFLE VND   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 205 ATVGSEDEYIKDLESGKEYFLEFVNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 264

Query: 114 XXXKEYEILKNYANSLHYQHTAFQNSSERIVQDYESLKMDCVQMKFDYDLQMKDFQVLVE 173
           XXX                                    D VQMK DYDLQ +DFQVLVE
Sbjct: 265 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDYVQMKVDYDLQTRDFQVLVE 324

Query: 174 RVDQTIEFLKMVSKRVNGFA 194
           R+DQTI+FL+MVSKR N FA
Sbjct: 325 RIDQTIKFLRMVSKRANVFA 344

The following BLAST results are available for this feature:
BLAST of MELO3C034107.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016900531.13.7e-1364.29PREDICTED: girdin-like [Cucumis melo][more]
BLAST of MELO3C034107.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C034107.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C034107.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DX26|A0A1S4DX26_CUCME2.4e-1364.29girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034107.2.1MELO3C034107.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 14..55

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C034107.2Cucumber (Chinese Long) v3cucmedB370
MELO3C034107.2Cucumber (Chinese Long) v3cucmedB362
MELO3C034107.2Watermelon (97103) v2medwmbB061
MELO3C034107.2Wax gourdmedwgoB080
MELO3C034107.2Wax gourdmedwgoB078
MELO3C034107.2Wax gourdmedwgoB083
MELO3C034107.2Cucumber (Gy14) v2cgybmedB312
MELO3C034107.2Cucumber (Gy14) v1cgymedB285
MELO3C034107.2Cucurbita maxima (Rimu)cmamedB738
MELO3C034107.2Cucurbita maxima (Rimu)cmamedB741
MELO3C034107.2Cucurbita moschata (Rifu)cmomedB733
MELO3C034107.2Cucurbita moschata (Rifu)cmomedB736
MELO3C034107.2Cucurbita pepo (Zucchini)cpemedB436
MELO3C034107.2Cucurbita pepo (Zucchini)cpemedB440
MELO3C034107.2Wild cucumber (PI 183967)cpimedB352
MELO3C034107.2Cucumber (Chinese Long) v2cumedB350
MELO3C034107.2Bottle gourd (USVL1VR-Ls)lsimedB297
MELO3C034107.2Watermelon (Charleston Gray)medwcgB064
MELO3C034107.2Watermelon (97103) v1medwmB054
MELO3C034107.2Silver-seed gourdcarmedB0091