MELO3C033851.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C033851.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionOJ1005_B10.22 protein
Locationchr09 : 9370896 .. 9371162 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACATTCGTCGGCACGAAATGTCATCGAAAGAGCATTTGGGTTGTTAAAAGGTCGCTGGGCAATTTTAAGAGGAAAGTCATACTACCCAGTCGATGTCCAATGTCGAACAATCATGGTGTGTTGTCTGCTACACAATCTTATCAATAGAGAGATGACTAACAGTGAAATAATTGATGATTTGGATGAGGGTGATTCAACATACGCTACAACTGGAGGTGACGAGATTAATTACATTGAGGCTTCAAACGAATGGAGTGAATAG

mRNA sequence

ATGAAACATTCGTCGGCACGAAATGTCATCGAAAGAGCATTTGGGTTGTTAAAAGGTCGCTGGGCAATTTTAAGAGGAAAGTCATACTACCCAGTCGATGTCCAATGTCGAACAATCATGGTGTGTTGTCTGCTACACAATCTTATCAATAGAGAGATGACTAACAGTGAAATAATTGATGATTTGGATGAGGGTGATTCAACATACGCTACAACTGGAGGTGACGAGATTAATTACATTGAGGCTTCAAACGAATGGAGTGAATAG

Coding sequence (CDS)

ATGAAACATTCGTCGGCACGAAATGTCATCGAAAGAGCATTTGGGTTGTTAAAAGGTCGCTGGGCAATTTTAAGAGGAAAGTCATACTACCCAGTCGATGTCCAATGTCGAACAATCATGGTGTGTTGTCTGCTACACAATCTTATCAATAGAGAGATGACTAACAGTGAAATAATTGATGATTTGGATGAGGGTGATTCAACATACGCTACAACTGGAGGTGACGAGATTAATTACATTGAGGCTTCAAACGAATGGAGTGAATAG

Protein sequence

MKHSSARNVIERAFGLLKGRWAILRGKSYYPVDVQCRTIMVCCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEASNEWSE
Homology
[Close]
BLAST of MELO3C033851.2 vs. NCBI nr
Match: XP_008441953.1 (PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo])

HSP 1 Score: 175.3 bits (443), Expect = 9.5e-41
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 0 

Query: 1   MKHSSARNVIERAFGLLKGRWAILRGKSYYPVDVQCRTIMVCCLLHNLINREMTNSEIID 60
           MKH SARNVIERAFGLLKGRW ILRGKSYYPVDVQCRTIM CCLLHNLI REMTN+EIID
Sbjct: 143 MKHLSARNVIERAFGLLKGRWTILRGKSYYPVDVQCRTIMACCLLHNLIKREMTNNEIID 202

Query: 61  DLDEGDSTYATTGGDEINYIEASNEWSE 89
           DLDEGDSTYATTGGDEINYIEASNEWSE
Sbjct: 203 DLDEGDSTYATTGGDEINYIEASNEWSE 230

[Close]
BLAST of MELO3C033851.2 vs. NCBI nr
Match: XP_008466673.1 (PREDICTED: uncharacterized protein LOC103504027 [Cucumis melo])

HSP 1 Score: 166.4 bits (420), Expect = 4.4e-38
Identity = 80/88 (90.91%), Postives = 83/88 (94.32%), Query Frame = 0 

Query: 1   MKHSSARNVIERAFGLLKGRWAILRGKSYYPVDVQCRTIMVCCLLHNLINREMTNSEIID 60
           MKHSSARNVIERAFGLLKG W ILRGKSYYPVDVQ RTIMVCCLLHNLINREMTNSEII+
Sbjct: 158 MKHSSARNVIERAFGLLKGHWTILRGKSYYPVDVQSRTIMVCCLLHNLINREMTNSEIIN 217

Query: 61  DLDEGDSTYATTGGDEINYIEASNEWSE 89
           +LDEGD+TYATT GDEINYI ASNEWSE
Sbjct: 218 NLDEGDATYATTRGDEINYIAASNEWSE 245

[Close]
BLAST of MELO3C033851.2 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 151.8 bits (382), Expect = 1.1e-33
Identity = 70/88 (79.55%), Postives = 80/88 (90.91%), Query Frame = 0 

Query: 1   MKHSSARNVIERAFGLLKGRWAILRGKSYYPVDVQCRTIMVCCLLHNLINREMTNSEIID 60
           MKH SARNVIERAFG+LKGRWAILRGKSYYPV+VQCRTI+ CCLLHNLINREMTN +I D
Sbjct: 259 MKHYSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLHNLINREMTNFDIED 318

Query: 61  DLDEGDSTYATTGGDEINYIEASNEWSE 89
           ++DE DST+ATT  D+I+YIE SNEWS+
Sbjct: 319 NIDEVDSTHATTAADDIHYIETSNEWSQ 346

[Close]
BLAST of MELO3C033851.2 vs. NCBI nr
Match: XP_011659758.1 (PREDICTED: putative nuclease HARBI1 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 1.1e-33
Identity = 70/88 (79.55%), Postives = 79/88 (89.77%), Query Frame = 0 

Query: 1   MKHSSARNVIERAFGLLKGRWAILRGKSYYPVDVQCRTIMVCCLLHNLINREMTNSEIID 60
           MKHSSARNVIERAFG+LK RWAIL+GKSYYPV  QC TI+ CCLLHNLINREMTN +I D
Sbjct: 99  MKHSSARNVIERAFGVLKSRWAILQGKSYYPVKAQCWTILACCLLHNLINREMTNIDIPD 158

Query: 61  DLDEGDSTYATTGGDEINYIEASNEWSE 89
           D+DEGDST+ATT GD+I+YIE SNEWS+
Sbjct: 159 DVDEGDSTHATTAGDDIHYIETSNEWSQ 186

[Close]
BLAST of MELO3C033851.2 vs. NCBI nr
Match: XP_016902382.1 (PREDICTED: uncharacterized protein LOC107991657 [Cucumis melo])

HSP 1 Score: 150.2 bits (378), Expect = 3.3e-33
Identity = 70/88 (79.55%), Postives = 80/88 (90.91%), Query Frame = 0 

Query: 1   MKHSSARNVIERAFGLLKGRWAILRGKSYYPVDVQCRTIMVCCLLHNLINREMTNSEIID 60
           MKHSSARNVIERAFG+LKGRWAILRGKSYYPV VQCRTI+ CCLLHNLINREMTN +I D
Sbjct: 47  MKHSSARNVIERAFGVLKGRWAILRGKSYYPVGVQCRTILACCLLHNLINREMTNFDIED 106

Query: 61  DLDEGDSTYATTGGDEINYIEASNEWSE 89
           +++E DST+ATT  D+I+YIE SNEWS+
Sbjct: 107 NINEVDSTHATTTADDIHYIETSNEWSQ 134

[Close]
BLAST of MELO3C033851.2 vs. TAIR10
Match: AT5G35695.1 (Putative harbinger transposase-derived nuclease (InterPro:IPR006912))

HSP 1 Score: 50.1 bits (118), Expect = 8.3e-07
Identity = 21/57 (36.84%), Postives = 32/57 (56.14%), Query Frame = 0 

Query: 1   MKHSSARNVIERAFGLLKGRWAILRGKSYYPVDVQCRTIMVCCLLHNLINREMTNSE 58
           ++H S RNVIER FG+ K R+AI +    +    Q   ++ C  LHN + +E  + E
Sbjct: 92  LRHVSLRNVIERIFGIFKSRFAIFKSAPPFSYKKQAGLVLTCAALHNFLRKECRSDE 148

[Close]
BLAST of MELO3C033851.2 vs. TAIR10
Match: AT3G55350.1 (PIF / Ping-Pong family of plant transposases)

HSP 1 Score: 43.1 bits (100), Expect = 1.0e-04
Identity = 21/49 (42.86%), Postives = 27/49 (55.10%), Query Frame = 0 

Query: 2   KHSSARNVIERAFGLLKGRWAILRGKSYYPVDVQC-RTIMVCCLLHNLI 50
           +HS A    + A   LK RW I+ G  + P   +  R I VCCLLHN+I
Sbjct: 307 RHSEATKAAQMALSKLKDRWRIINGVMWMPDRNRLPRIIFVCCLLHNII 355

[Close]
BLAST of MELO3C033851.2 vs. TAIR10
Match: AT3G19120.1 (PIF / Ping-Pong family of plant transposases)

HSP 1 Score: 41.6 bits (96), Expect = 3.0e-04
Identity = 28/60 (46.67%), Postives = 36/60 (60.00%), Query Frame = 0 

Query: 7   RNVIERAFGLLKGRWAILRGKSYYPVDVQCRTIMVCCLLHNL--INREMTNSEIIDDLDE 65
           R+V+  A GLLK RW IL+  +   V+   +TI+ CC+LHNL  I RE    EI  D DE
Sbjct: 353 RSVVVEAIGLLKARWKILQSLN-VGVNHAPQTIVACCVLHNLCQIARE-PEPEIWKDPDE 410

[Close]
BLAST of MELO3C033851.2 vs. TAIR10
Match: AT5G12010.1 (unknown protein)

HSP 1 Score: 41.2 bits (95), Expect = 3.9e-04
Identity = 22/66 (33.33%), Postives = 32/66 (48.48%), Query Frame = 0 

Query: 2   KHSSARNVIERAFGLLKGRWAILRGKSYYPVDVQCRTIMVCCLLHNLINREMTNS----- 61
           K S  + V + AFG LKGRWA L+ ++   +      +  CC+LHN+             
Sbjct: 402 KMSEVQGVAKEAFGRLKGRWACLQKRTEVKLQDLPTVLGACCVLHNICEMREEKMEPELM 461

[Close]
BLAST of MELO3C033851.2 vs. TrEMBL
Match: tr|A0A1S3B4J8|A0A1S3B4J8_CUCME (uncharacterized protein LOC103485952 OS=Cucumis melo OX=3656 GN=LOC103485952 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 6.3e-41
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 0 

Query: 1   MKHSSARNVIERAFGLLKGRWAILRGKSYYPVDVQCRTIMVCCLLHNLINREMTNSEIID 60
           MKH SARNVIERAFGLLKGRW ILRGKSYYPVDVQCRTIM CCLLHNLI REMTN+EIID
Sbjct: 143 MKHLSARNVIERAFGLLKGRWTILRGKSYYPVDVQCRTIMACCLLHNLIKREMTNNEIID 202

Query: 61  DLDEGDSTYATTGGDEINYIEASNEWSE 89
           DLDEGDSTYATTGGDEINYIEASNEWSE
Sbjct: 203 DLDEGDSTYATTGGDEINYIEASNEWSE 230

[Close]
BLAST of MELO3C033851.2 vs. TrEMBL
Match: tr|A0A1S3CRU3|A0A1S3CRU3_CUCME (uncharacterized protein LOC103504027 OS=Cucumis melo OX=3656 GN=LOC103504027 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.9e-38
Identity = 80/88 (90.91%), Postives = 83/88 (94.32%), Query Frame = 0 

Query: 1   MKHSSARNVIERAFGLLKGRWAILRGKSYYPVDVQCRTIMVCCLLHNLINREMTNSEIID 60
           MKHSSARNVIERAFGLLKG W ILRGKSYYPVDVQ RTIMVCCLLHNLINREMTNSEII+
Sbjct: 158 MKHSSARNVIERAFGLLKGHWTILRGKSYYPVDVQSRTIMVCCLLHNLINREMTNSEIIN 217

Query: 61  DLDEGDSTYATTGGDEINYIEASNEWSE 89
           +LDEGD+TYATT GDEINYI ASNEWSE
Sbjct: 218 NLDEGDATYATTRGDEINYIAASNEWSE 245

[Close]
BLAST of MELO3C033851.2 vs. TrEMBL
Match: tr|E5GCB5|E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 7.4e-34
Identity = 70/88 (79.55%), Postives = 80/88 (90.91%), Query Frame = 0 

Query: 1   MKHSSARNVIERAFGLLKGRWAILRGKSYYPVDVQCRTIMVCCLLHNLINREMTNSEIID 60
           MKH SARNVIERAFG+LKGRWAILRGKSYYPV+VQCRTI+ CCLLHNLINREMTN +I D
Sbjct: 259 MKHYSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLHNLINREMTNFDIED 318

Query: 61  DLDEGDSTYATTGGDEINYIEASNEWSE 89
           ++DE DST+ATT  D+I+YIE SNEWS+
Sbjct: 319 NIDEVDSTHATTAADDIHYIETSNEWSQ 346

[Close]
BLAST of MELO3C033851.2 vs. TrEMBL
Match: tr|A0A1S4E2C9|A0A1S4E2C9_CUCME (uncharacterized protein LOC107991657 OS=Cucumis melo OX=3656 GN=LOC107991657 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.2e-33
Identity = 70/88 (79.55%), Postives = 80/88 (90.91%), Query Frame = 0 

Query: 1   MKHSSARNVIERAFGLLKGRWAILRGKSYYPVDVQCRTIMVCCLLHNLINREMTNSEIID 60
           MKHSSARNVIERAFG+LKGRWAILRGKSYYPV VQCRTI+ CCLLHNLINREMTN +I D
Sbjct: 47  MKHSSARNVIERAFGVLKGRWAILRGKSYYPVGVQCRTILACCLLHNLINREMTNFDIED 106

Query: 61  DLDEGDSTYATTGGDEINYIEASNEWSE 89
           +++E DST+ATT  D+I+YIE SNEWS+
Sbjct: 107 NINEVDSTHATTTADDIHYIETSNEWSQ 134

[Close]
BLAST of MELO3C033851.2 vs. TrEMBL
Match: tr|A0A1S3C5E3|A0A1S3C5E3_CUCME (uncharacterized protein LOC103496660 OS=Cucumis melo OX=3656 GN=LOC103496660 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.2e-33
Identity = 70/82 (85.37%), Postives = 75/82 (91.46%), Query Frame = 0 

Query: 7   RNVIERAFGLLKGRWAILRGKSYYPVDVQCRTIMVCCLLHNLINREMTNSEIIDDLDEGD 66
           +  +ERAFGLLKGRW ILRGKSYYPV+VQCRTIM CCLLHNLIN+EM NSEIIDDLDEGD
Sbjct: 137 KECLERAFGLLKGRWKILRGKSYYPVNVQCRTIMACCLLHNLINKEMANSEIIDDLDEGD 196

Query: 67  STYATTGGDEINYIEASNEWSE 89
           STYATT GDEINYIEASNE S+
Sbjct: 197 STYATTEGDEINYIEASNELSD 218

The following BLAST results are available for this feature:
BLAST of MELO3C033851.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008441953.19.5e-4194.32PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo][more]
XP_008466673.14.4e-3890.91PREDICTED: uncharacterized protein LOC103504027 [Cucumis melo][more]
ADN34114.11.1e-3379.55retrotransposon protein [Cucumis melo subsp. melo][more]
XP_011659758.11.1e-3379.55PREDICTED: putative nuclease HARBI1 [Cucumis sativus][more]
XP_016902382.13.3e-3379.55PREDICTED: uncharacterized protein LOC107991657 [Cucumis melo][more]
BLAST of MELO3C033851.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G35695.18.3e-0736.84Putative harbinger transposase-derived nuclease (InterPro:IPR006912)[more]
AT3G55350.11.0e-0442.86PIF / Ping-Pong family of plant transposases[more]
AT3G19120.13.0e-0446.67PIF / Ping-Pong family of plant transposases[more]
AT5G12010.13.9e-0433.33unknown protein[more]
BLAST of MELO3C033851.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C033851.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B4J8|A0A1S3B4J8_CUCME6.3e-4194.32uncharacterized protein LOC103485952 OS=Cucumis melo OX=3656 GN=LOC103485952 PE=... [more]
tr|A0A1S3CRU3|A0A1S3CRU3_CUCME2.9e-3890.91uncharacterized protein LOC103504027 OS=Cucumis melo OX=3656 GN=LOC103504027 PE=... [more]
tr|E5GCB5|E5GCB5_CUCME7.4e-3479.55Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S4E2C9|A0A1S4E2C9_CUCME2.2e-3379.55uncharacterized protein LOC107991657 OS=Cucumis melo OX=3656 GN=LOC107991657 PE=... [more]
tr|A0A1S3C5E3|A0A1S3C5E3_CUCME8.2e-3385.37uncharacterized protein LOC103496660 OS=Cucumis melo OX=3656 GN=LOC103496660 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027806HARBI1_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033851.2.1MELO3C033851.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027806Harbinger transposase-derived nuclease domainPFAMPF13359DDE_Tnp_4coord: 2..47
e-value: 5.1E-9
score: 35.9
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 2..72
NoneNo IPR availablePANTHERPTHR22930:SF118SUBFAMILY NOT NAMEDcoord: 2..72

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C033851.2Cucumber (Gy14) v2cgybmedB300
MELO3C033851.2Cucumber (Gy14) v1cgymedB006
MELO3C033851.2Cucurbita maxima (Rimu)cmamedB159
MELO3C033851.2Cucurbita maxima (Rimu)cmamedB805
MELO3C033851.2Cucurbita moschata (Rifu)cmomedB149
MELO3C033851.2Cucurbita moschata (Rifu)cmomedB803
MELO3C033851.2Cucurbita pepo (Zucchini)cpemedB878
MELO3C033851.2Wild cucumber (PI 183967)cpimedB340
MELO3C033851.2Cucumber (Chinese Long) v2cumedB338
MELO3C033851.2Bottle gourd (USVL1VR-Ls)lsimedB173
MELO3C033851.2Watermelon (Charleston Gray)medwcgB001
MELO3C033851.2Watermelon (97103) v1medwmB002
MELO3C033851.2Silver-seed gourdcarmedB0331
MELO3C033851.2Cucumber (Chinese Long) v3cucmedB351
MELO3C033851.2Watermelon (97103) v2medwmbB035
MELO3C033851.2Wax gourdmedwgoB026