MELO3C033819.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C033819.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionBHLH transcription factor
Locationchr09 : 22934444 .. 22934680 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTCTTCAATGTTGAGTCCcCCTTTTCTTTTGACTTGGGGGAAGATCTAGTCCCTCTGCCCTCTCTTCCATCGTCCTCCGTCATCTCTCCGCCATTGGACAACGACGGTAACCGTGTTTCCCAAAAGCCAAAAAATGGCCGCCGGAAAAAGCCACTGCCCAACACTTGCAATGATGATGGCGGCGATGAGAACCTTGACGAACAAAAGAAGAAGAAGATAATACATAGAGAT

mRNA sequence

ATGGAATTCTTCAATGTTGAGTCCcCCTTTTCTTTTGACTTGGGGGAAGATCTAGTCCCTCTGCCCTCTCTTCCATCGTCCTCCGTCATCTCTCCGCCATTGGACAACGACGGTAACCGTGTTTCCCAAAAGCCAAAAAATGGCCGCCGGAAAAAGCCACTGCCCAACACTTGCAATGATGATGGCGGCGATGAGAACCTTGACGAACAAAAGAAGAAGAAGATAATACATAGAGAT

Coding sequence (CDS)

ATGGAATTCTTCAATGTTGAGTCCcCCTTTTCTTTTGACTTGGGGGAAGATCTAGTCCCTCTGCCCTCTCTTCCATCGTCCTCCGTCATCTCTCCGCCATTGGACAACGACGGTAACCGTGTTTCCCAAAAGCCAAAAAATGGCCGCCGGAAAAAGCCACTGCCCAACACTTGCAATGATGATGGCGGCGATGAGAACCTTGACGAACAAAAGAAGAAGAAGATAATACATAGAGAT

Protein sequence

MEFFNVESPFSFDLGEDLVPLPSLPSSSVISPPLDNDGNRVSQKPKNGRRKKPLPNTCNDDGGDENLDEQKKKKIIHRD
Homology
[Close]
BLAST of MELO3C033819.2 vs. NCBI nr
Match: NP_001295816.1 (transcription factor bHLH118-like [Cucumis sativus] >AIT72026.1 bHLH transcription factor [Cucumis sativus] >KGN50162.1 hypothetical protein Csa_5G156220 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 2.3e-22
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0 

Query: 1  MEFFNVESPFSFDLGEDLVPLPSLPSSSVISPPLDNDGNRVSQKPKNGRRKKPLPNTCN 60
          ME FN ESPFSFD+GEDLVPLPSLPSSSVISPPLDN GNRVSQKPKNGRRKKPLPNTCN
Sbjct: 1  MEMFNAESPFSFDVGEDLVPLPSLPSSSVISPPLDNYGNRVSQKPKNGRRKKPLPNTCN 59

[Close]
BLAST of MELO3C033819.2 vs. NCBI nr
Match: XP_022958459.1 (transcription factor bHLH118-like [Cucurbita moschata])

HSP 1 Score: 75.9 bits (185), Expect = 7.0e-11
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 0 

Query: 5  NVESPFSFDLGEDLVPLPSLPSSSVISP------PLDNDGNRVSQKPKNGRRKKPLPNTC 64
          N+ SPFS+DLGE+L PLPSL    +  P      PLDN+ +  +QKPKNGRRKKP P   
Sbjct: 4  NIGSPFSYDLGEELFPLPSLSCIDIPVPQFPSISPLDNNKSG-TQKPKNGRRKKP-PANS 63

Query: 65 NDDGGDENLDEQKKKKIIHRD 80
          +DD GD N +E KKKKI+HRD
Sbjct: 64 SDDIGDMNPNEHKKKKIMHRD 82

[Close]
BLAST of MELO3C033819.2 vs. NCBI nr
Match: XP_023522249.1 (transcription factor bHLH118-like [Cucurbita pepo subsp. pepo] >XP_023534748.1 transcription factor bHLH118-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 74.3 bits (181), Expect = 2.0e-10
Identity = 46/81 (56.79%), Postives = 55/81 (67.90%), Query Frame = 0 

Query: 5  NVESPFSFDLGEDLVPLPSLPSSSVISP------PLDNDGNRVSQKPKNGRRKKPLPNTC 64
          NV SPFS+DLGE+L PLPSL    +  P      PLDN+ +  +QKPKNGRRK P P   
Sbjct: 4  NVGSPFSYDLGEELFPLPSLSCIDIPVPQFPSISPLDNNKSG-TQKPKNGRRKNP-PANS 63

Query: 65 NDDGGDENLDEQKKKKIIHRD 80
          +DD GD N +E KKKKI+HRD
Sbjct: 64 SDDIGDMNPNEHKKKKIMHRD 82

[Close]
BLAST of MELO3C033819.2 vs. NCBI nr
Match: XP_022995893.1 (transcription factor bHLH118-like [Cucurbita maxima])

HSP 1 Score: 73.2 bits (178), Expect = 4.5e-10
Identity = 45/81 (55.56%), Postives = 55/81 (67.90%), Query Frame = 0 

Query: 5  NVESPFSFDLGEDLVPLPSLPSSSVISP------PLDNDGNRVSQKPKNGRRKKPLPNTC 64
          N+ SPFS+DLGE+L PLPSL    +  P      PLD++ +  SQKPKNGRRK P P   
Sbjct: 4  NIGSPFSYDLGEELFPLPSLSCIDIPVPQFPSISPLDSNKSG-SQKPKNGRRKNP-PANS 63

Query: 65 NDDGGDENLDEQKKKKIIHRD 80
          +DD GD N +E KKKKI+HRD
Sbjct: 64 SDDIGDMNPNEHKKKKIMHRD 82

[Close]
BLAST of MELO3C033819.2 vs. NCBI nr
Match: XP_022156904.1 (transcription factor bHLH118-like [Momordica charantia])

HSP 1 Score: 53.9 bits (128), Expect = 2.9e-04
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 0 

Query: 6  VESPFSFDLGEDLVPLPSLPSSSVISPPLDNDGNR--VSQKPKNGRRKKPLPNTCNDDGG 65
          ++SPFSFD+ +DL PLP L    +  P L +  +R   + KPKN RR+KP P + +    
Sbjct: 5  IDSPFSFDVVDDLFPLPPLSCMDIPLPQLPSVVSRPAAALKPKNCRRRKPPPVSSD---- 64

Query: 66 DENLDEQKKKKIIHRD 80
            N +E KK+KIIHRD
Sbjct: 65 HSNPNEHKKRKIIHRD 76

[Close]
BLAST of MELO3C033819.2 vs. TrEMBL
Match: tr|A0A097IYN6|A0A097IYN6_CUCSA (BHLH transcription factor OS=Cucumis sativus OX=3659 GN=Csa5G156220 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-22
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0 

Query: 1  MEFFNVESPFSFDLGEDLVPLPSLPSSSVISPPLDNDGNRVSQKPKNGRRKKPLPNTCN 60
          ME FN ESPFSFD+GEDLVPLPSLPSSSVISPPLDN GNRVSQKPKNGRRKKPLPNTCN
Sbjct: 1  MEMFNAESPFSFDVGEDLVPLPSLPSSSVISPPLDNYGNRVSQKPKNGRRKKPLPNTCN 59

The following BLAST results are available for this feature:
BLAST of MELO3C033819.2 vs. NCBI nr
Match NameE-valueIdentityDescription
NP_001295816.12.3e-2293.22transcription factor bHLH118-like [Cucumis sativus] >AIT72026.1 bHLH transcripti... [more]
XP_022958459.17.0e-1156.79transcription factor bHLH118-like [Cucurbita moschata][more]
XP_023522249.12.0e-1056.79transcription factor bHLH118-like [Cucurbita pepo subsp. pepo] >XP_023534748.1 t... [more]
XP_022995893.14.5e-1055.56transcription factor bHLH118-like [Cucurbita maxima][more]
XP_022156904.12.9e-0444.74transcription factor bHLH118-like [Momordica charantia][more]
BLAST of MELO3C033819.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C033819.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C033819.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A097IYN6|A0A097IYN6_CUCSA1.5e-2293.22BHLH transcription factor OS=Cucumis sativus OX=3659 GN=Csa5G156220 PE=2 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033819.2.1MELO3C033819.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..79

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C033819.2Cla97C01G003430Watermelon (97103) v2medwmbB006
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C033819.2Cucumber (Gy14) v2cgybmedB136
MELO3C033819.2Cucumber (Gy14) v2cgybmedB137
MELO3C033819.2Cucumber (Gy14) v2cgybmedB140
MELO3C033819.2Cucumber (Gy14) v2cgybmedB298
MELO3C033819.2Cucumber (Gy14) v1cgymedB421
MELO3C033819.2Cucumber (Gy14) v1cgymedB422
MELO3C033819.2Cucumber (Gy14) v1cgymedB494
MELO3C033819.2Cucumber (Gy14) v1cgymedB531
MELO3C033819.2Cucurbita maxima (Rimu)cmamedB284
MELO3C033819.2Cucurbita maxima (Rimu)cmamedB407
MELO3C033819.2Cucurbita maxima (Rimu)cmamedB609
MELO3C033819.2Cucurbita maxima (Rimu)cmamedB843
MELO3C033819.2Cucurbita moschata (Rifu)cmomedB270
MELO3C033819.2Cucurbita moschata (Rifu)cmomedB315
MELO3C033819.2Cucurbita moschata (Rifu)cmomedB392
MELO3C033819.2Cucurbita moschata (Rifu)cmomedB596
MELO3C033819.2Cucurbita moschata (Rifu)cmomedB834
MELO3C033819.2Cucurbita moschata (Rifu)cmomedB835
MELO3C033819.2Cucurbita pepo (Zucchini)cpemedB024
MELO3C033819.2Cucurbita pepo (Zucchini)cpemedB183
MELO3C033819.2Cucurbita pepo (Zucchini)cpemedB774
MELO3C033819.2Cucurbita pepo (Zucchini)cpemedB928
MELO3C033819.2Wild cucumber (PI 183967)cpimedB153
MELO3C033819.2Wild cucumber (PI 183967)cpimedB154
MELO3C033819.2Wild cucumber (PI 183967)cpimedB158
MELO3C033819.2Wild cucumber (PI 183967)cpimedB338
MELO3C033819.2Cucumber (Chinese Long) v2cumedB154
MELO3C033819.2Cucumber (Chinese Long) v2cumedB336
MELO3C033819.2Melon (DHL92) v3.6.1medmedB012
MELO3C033819.2Melon (DHL92) v3.6.1medmedB013
MELO3C033819.2Melon (DHL92) v3.6.1medmedB017
MELO3C033819.2Bottle gourd (USVL1VR-Ls)lsimedB012
MELO3C033819.2Bottle gourd (USVL1VR-Ls)lsimedB354
MELO3C033819.2Bottle gourd (USVL1VR-Ls)lsimedB357
MELO3C033819.2Bottle gourd (USVL1VR-Ls)lsimedB446
MELO3C033819.2Watermelon (Charleston Gray)medwcgB016
MELO3C033819.2Watermelon (Charleston Gray)medwcgB004
MELO3C033819.2Watermelon (Charleston Gray)medwcgB025
MELO3C033819.2Watermelon (97103) v1medwmB015
MELO3C033819.2Watermelon (97103) v1medwmB027
MELO3C033819.2Silver-seed gourdcarmedB0499
MELO3C033819.2Silver-seed gourdcarmedB0627
MELO3C033819.2Silver-seed gourdcarmedB0865
MELO3C033819.2Silver-seed gourdcarmedB0910
MELO3C033819.2Silver-seed gourdcarmedB0927
MELO3C033819.2Cucumber (Chinese Long) v3cucmedB154
MELO3C033819.2Cucumber (Chinese Long) v3cucmedB155
MELO3C033819.2Cucumber (Chinese Long) v3cucmedB159
MELO3C033819.2Cucumber (Chinese Long) v3cucmedB349
MELO3C033819.2Watermelon (97103) v2medwmbB010
MELO3C033819.2Watermelon (97103) v2medwmbB021
MELO3C033819.2Watermelon (97103) v2medwmbB026
MELO3C033819.2Wax gourdmedwgoB010
MELO3C033819.2Wax gourdmedwgoB037
MELO3C033819.2Wax gourdmedwgoB039