MELO3C033807.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C033807.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionReceptor-like protein kinase
Locationchr09 : 21483623 .. 21484684 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTAGATTTTGATTTTTAAAAATTAAGTATATAATATTAAGATACATCTTATACTTCTAAACATTTAAAATCATTTTTATTTGTCTAAAACAAAAAAATCGAAGATCAAAATTTTACCTTAATCTCAGTCCTTCAGGTCTTAAATACTCTTTGAGTCGAGTTTGGATCAGTCAAATAACTTTTTAACGTAAGTATAATTTTTTGGTCCATATTTTGAAGAATAGATGCATTTAGTTCCTCGTGTTTTAAATTAGGCAATTGAATTCCTGAGTTTTTAATTTGACAAGTTCTACCTAGTCGAATTATCTATTGACAAGCTCTGTTAGTTTTTTTAGAAGAATGTTTAGTAGGAAACTCCATGAAAATGTATATATATATATATATTTATATTCGTTTTCTCAATAATTTAATTTGGAAATGATTTTTTTTAAGAAAAGAAATGATTTGTTTTATATTAATTTTATTTTAGACAAGATTATTGGGTTGATTATGAAAGTTGAAACTAAGTTATAAAATATCAAAATTTAAAGTATAAAATATCTTTTAATGAGAAATTAAGTAAAAGGCGTGACTAAGTCAAAGTCGTCTAAAAAAATAATTAAACATTTTAGTGAAACATCACATGTGTTTGTGTTTTATTATCTCTATCTTAATAACTACCTCTATAATTGTCATATCTAGTACAACTCATCGAATCAAGTGATTTAAATTACTTCATGGAACAACTAAAAACGTTCTCGGTAAATAAACTTCTTCAAAAACCATTTGGTTGATTCCATACCAAGTAAGATAATTATGCTTAAAGGATTATTTGGATTGAATTTGTCCCACAATAATCTAACCGAGACAATTCCTACAGAAATAGGAGAAATAGAGGTGTTAGAATCACTTGACTTATCTTTCAACCAACTTTCAGGACCAATTATTCCTAGAAGCATATCAAAACTAAGTAAATTAGGCCTGTTGATATTATCCCACAAAATTTTTTGTAGAGAATTTTCTCGTGAAGGTCATCTCTCCACATTCAATGAAACTTTAAGTTTCGGTGACAATCCATATTTA

mRNA sequence

TCTAGATTTTGATTTTTAAAAATTAAGTATATAATATTAAGATACATCTTATACTTCTAAACATTTAAAATCATTTTTATTTGTCTAAAACAAAAAAATCGAAGATCAAAATTTTACCTTAATCTCAGTCCTTCAGGTCTTAAATACTCTTTGAGTCGAGTTTGGATCAGTCAAATAACTTTTTAACGTAAGTATAATTTTTTGGTCCATATTTTGAAGAATAGATGCATTTAGTTCCTCGTGTTTTAAATTAGGCAATTGAATTCCTGAGTTTTTAATTTGACAAGTTCTACCTAGTCGAATTATCTATTGACAAGCTCTGTTAGTTTTTTTAGAAGAATGTTTAGTAGGAAACTCCATGAAAATGTATATATATATATATATTTATATTCGTTTTCTCAATAATTTAATTTGGAAATGATTTTTTTTAAGAAAAGAAATGATTTGTTTTATATTAATTTTATTTTAGACAAGATTATTGGGTTGATTATGAAAGTTGAAAAAATTAAGTAAAAGGCGTGACTAAGTCAAAGTCGTCTAAAAAAATAATTAAACATTTTAGTGAAACATCACATGTGTTTGTGTTTTATTATCTCTATCTTAATAACTACCTCTATAATTGTCATATCTAGTACAACTCATCGAATCAAGTGATTTAAATTACTTCATGGAACAACTAAAAACGTTCTCGGTAAATAAACTTCTTCAAAAACCATTTGGTTGATTCCATACCAAGTAAGATAATTATGCTTAAAGGATTATTTGGATTGAATTTGTCCCACAATAATCTAACCGAGACAATTCCTACAGAAATAGGAGAAATAGAGGTGTTAGAATCACTTGACTTATCTTTCAACCAACTTTCAGGACCAATTATTCCTAGAAGCATATCAAAACTAAGTAAATTAGGCCTGTTGATATTATCCCACAAAATTTTTTGTAGAGAATTTTCTCGTGAAGGTCATCTCTCCACATTCAATGAAACTTTAAGTTTCGGTGACAATCCATATTTA

Coding sequence (CDS)

ATGCTTAAAGGATTATTTGGATTGAATTTGTCCCACAATAATCTAACCGAGACAATTCCTACAGAAATAGGAGAAATAGAGGTGTTAGAATCACTTGACTTATCTTTCAACCAACTTTCAGGACCAATTATTCCTAGAAGCATATCAAAACTAAGTAAATTAGGCCTGTTGATATTATCCCACAAAATTTTTTGTAGAGAATTTTCTCGTGAAGGTCATCTCTCCACATTCAATGAAACTTTAAGTTTCGGTGACAATCCATATTTA

Protein sequence

MLKGLFGLNLSHNNLTETIPTEIGEIEVLESLDLSFNQLSGPIIPRSISKLSKLGLLILSHKIFCREFSREGHLSTFNETLSFGDNPYL
Homology
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BLAST of MELO3C033807.2 vs. NCBI nr
Match: GAU14516.1 (hypothetical protein TSUD_250580 [Trifolium subterraneum])

HSP 1 Score: 52.4 bits (124), Expect = 9.3e-04
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 0 

Query: 6   FGLNLSHNNLTETIPTEIGEIEVLESLDLSFNQLSGPIIPRSISKLSKLGLLI---LSHK 65
           +GLNLS N LT  IP+EIG++++L+SLD+S N LSG     SI  L  LG LI   +S+ 
Sbjct: 187 YGLNLSANGLTGGIPSEIGKLKMLQSLDISLNNLSG-----SIHALEDLGSLIEVNISYN 243

The following BLAST results are available for this feature:
BLAST of MELO3C033807.2 vs. NCBI nr
Match NameE-valueIdentityDescription
GAU14516.19.3e-0450.00hypothetical protein TSUD_250580 [Trifolium subterraneum][more]
BLAST of MELO3C033807.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C033807.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C033807.2 vs. TrEMBL
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016310 phosphorylation
biological_process GO:0007165 signal transduction
biological_process GO:0008150 biological_process
biological_process GO:0006468 protein phosphorylation
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005575 cellular_component
cellular_component GO:0016020 membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005576 extracellular region
molecular_function GO:0005524 ATP binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0019199 transmembrane receptor protein kinase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0016301 kinase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033807.2.1MELO3C033807.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3DG3DSA:3.80.10.10coord: 1..89
e-value: 1.1E-20
score: 75.2
IPR001611Leucine-rich repeatPFAMPF00560LRR_1coord: 29..51
e-value: 0.15
score: 12.5
NoneNo IPR availablePANTHERPTHR27004FAMILY NOT NAMEDcoord: 2..89
NoneNo IPR availableSUPERFAMILYSSF52058L domain-likecoord: 2..83

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C033807.2CsaV3_5G005310Cucumber (Chinese Long) v3cucmedB352
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C033807.2Silver-seed gourdcarmedB0718
MELO3C033807.2Silver-seed gourdcarmedB1014
MELO3C033807.2Watermelon (97103) v2medwmbB007
MELO3C033807.2Wax gourdmedwgoB006
MELO3C033807.2Wax gourdmedwgoB014
MELO3C033807.2Cucumber (Gy14) v2cgybmedB301
MELO3C033807.2Cucumber (Gy14) v1cgymedB204
MELO3C033807.2Cucurbita maxima (Rimu)cmamedB291
MELO3C033807.2Cucurbita maxima (Rimu)cmamedB610
MELO3C033807.2Cucurbita moschata (Rifu)cmomedB277
MELO3C033807.2Cucurbita moschata (Rifu)cmomedB597
MELO3C033807.2Cucurbita pepo (Zucchini)cpemedB174
MELO3C033807.2Cucurbita pepo (Zucchini)cpemedB775
MELO3C033807.2Wild cucumber (PI 183967)cpimedB341
MELO3C033807.2Cucumber (Chinese Long) v2cumedB339
MELO3C033807.2Bottle gourd (USVL1VR-Ls)lsimedB013
MELO3C033807.2Bottle gourd (USVL1VR-Ls)lsimedB356
MELO3C033807.2Watermelon (Charleston Gray)medwcgB017
MELO3C033807.2Watermelon (97103) v1medwmB021
MELO3C033807.2Watermelon (97103) v1medwmB022