MELO3C033786.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C033786.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr09 : 19660445 .. 19660630 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCAAGAAAAGGCGATCTTGTGCTATACTCCGGTGATCTCTTTCCTACCGAGGCACGCAAACTCCCATCGTGTCCCAAATCACATTCCGTGAAGAGAAAGGGGAAGCCTACTCATCCATCAGCTCCTCTCCGTCATCGGTGCGGTTTTACGAAGCGTCTAAGCACAGTTCACTCGCGTTGA

mRNA sequence

ATGGCAGCAAGAAAAGGCGATCTTGTGCTATACTCCGGTGATCTCTTTCCTACCGAGGCACGCAAACTCCCATCGTGTCCCAAATCACATTCCGTGAAGAGAAAGGGGAAGCCTACTCATCCATCAGCTCCTCTCCGTCATCGGTGCGGTTTTACGAAGCGTCTAAGCACAGTTCACTCGCGTTGA

Coding sequence (CDS)

ATGGCAGCAAGAAAAGGCGATCTTGTGCTATACTCCGGTGATCTCTTTCCTACCGAGGCACGCAAACTCCCATCGTGTCCCAAATCACATTCCGTGAAGAGAAAGGGGAAGCCTACTCATCCATCAGCTCCTCTCCGTCATCGGTGCGGTTTTACGAAGCGTCTAAGCACAGTTCACTCGCGTTGA

Protein sequence

MAARKGDLVLYSGDLFPTEARKLPSCPKSHSVKRKGKPTHPSAPLRHRCGFTKRLSTVHSR

Homology

[Close]

BLAST of MELO3C033786.2 vs. NCBI nr
Match: PPR89037.1 (hypothetical protein GOBAR_AA31657 [Gossypium barbadense])

HSP 1 Score: 120.2 bits (300), Expect = 2.5e-24
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 1  MAARKGDLVLYSGDLFPTEARKLPSCPKSHSVKRKGKPTHPSAPLRHRCGFTKRLSTVHS 60
          MAARKGDLVLYSGDLFPTEARKLPSCP+SHSV RKGKPTHPSAPL  RCGFTKRLSTVHS
Sbjct: 21 MAARKGDLVLYSGDLFPTEARKLPSCPRSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHS 80

Query: 61 R 62
          R
Sbjct: 81 R 81

[Close]

BLAST of MELO3C033786.2 vs. NCBI nr
Match: PNY07357.1 (hypothetical protein L195_g003851 [Trifolium pratense])

HSP 1 Score: 110.9 bits (276), Expect = 1.5e-21
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 4   RKGDLVLYSGDLFPTEARKLPSCPKSHSVKRKGKPTHPSAPLRHRCGFTKRLSTVHSR 62
           +KGDLVLYSGDLFPTEARK PSCP+SHSV RKGKPTHPSAPL  RCGFTKRLSTVHSR
Sbjct: 184 KKGDLVLYSGDLFPTEARKPPSCPRSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHSR 241

[Close]

BLAST of MELO3C033786.2 vs. NCBI nr
Match: KRH04768.1 (hypothetical protein GLYMA_17G185400 [Glycine max])

HSP 1 Score: 106.7 bits (265), Expect = 2.9e-20
Identity = 53/62 (85.48%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 1  MAAR-KGDLVLYSGDLFPTEARKLPSCPKSHSVKRKGKPTHPSAPLRHRCGFTKRLSTVH 60
          MAAR KGDLVLY GDLFPTEARK PSCP+SHSV RKGKPTHP APL  RCGFTKRL TVH
Sbjct: 1  MAARKKGDLVLYFGDLFPTEARKPPSCPRSHSVNRKGKPTHPLAPLVDRCGFTKRLGTVH 60

Query: 61 SR 62
          SR
Sbjct: 61 SR 62

[Close]

BLAST of MELO3C033786.2 vs. NCBI nr
Match: PHT34151.1 (hypothetical protein CQW23_25951 [Capsicum baccatum])

HSP 1 Score: 105.5 bits (262), Expect = 6.4e-20
Identity = 50/60 (83.33%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1   MAARKGDLVLYSGDLFPTEARKLPSCPKSHSVKRKGKPTHPSAPLRHRCGFTKRLSTVHS 60
           MAARKGDLVLYSGD+FPTE  KLPSCP+S+ V RKGKPTH SAPL  RCGFTKRLSTVHS
Sbjct: 112 MAARKGDLVLYSGDIFPTETHKLPSCPRSYFVNRKGKPTHLSAPLIDRCGFTKRLSTVHS 171

[Close]

BLAST of MELO3C033786.2 vs. NCBI nr
Match: PHT45870.1 (hypothetical protein CQW23_15028 [Capsicum baccatum])

HSP 1 Score: 99.4 bits (246), Expect = 4.6e-18
Identity = 49/60 (81.67%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1   MAARKGDLVLYSGDLFPTEARKLPSCPKSHSVKRKGKPTHPSAPLRHRCGFTKRLSTVHS 60
           MA RKGDLVLYSGD+F TE RKLPSCPKS+ V RKGKPTH SAPL  R GFTKRLSTVHS
Sbjct: 109 MAVRKGDLVLYSGDIFSTETRKLPSCPKSYFVNRKGKPTHLSAPLVDRRGFTKRLSTVHS 168

[Close]

BLAST of MELO3C033786.2 vs. TrEMBL
Match: tr|A0A2P5WDA1|A0A2P5WDA1_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA31657 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-24
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 1  MAARKGDLVLYSGDLFPTEARKLPSCPKSHSVKRKGKPTHPSAPLRHRCGFTKRLSTVHS 60
          MAARKGDLVLYSGDLFPTEARKLPSCP+SHSV RKGKPTHPSAPL  RCGFTKRLSTVHS
Sbjct: 21 MAARKGDLVLYSGDLFPTEARKLPSCPRSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHS 80

Query: 61 R 62
          R
Sbjct: 81 R 81

[Close]

BLAST of MELO3C033786.2 vs. TrEMBL
Match: tr|A0A0V0GGV8|A0A0V0GGV8_SOLCH (Putative ovule protein (Fragment) OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-22
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1  MAARKGDLVLYSGDLFPTEARKLPSCPKSHSVKRKGKPTHPSAPLRHRCGFTKRLSTVHS 60
          MAARKGDLVLYSGD+FPTE RKLPSCP+SHSV RKGKPTH SAPL  RCGFTKRLSTVHS
Sbjct: 26 MAARKGDLVLYSGDIFPTETRKLPSCPRSHSVNRKGKPTHLSAPLVDRCGFTKRLSTVHS 85

Query: 61 R 62
          R
Sbjct: 86 R 86

[Close]

BLAST of MELO3C033786.2 vs. TrEMBL
Match: tr|A0A2K3NWF0|A0A2K3NWF0_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g003851 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-21
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 4   RKGDLVLYSGDLFPTEARKLPSCPKSHSVKRKGKPTHPSAPLRHRCGFTKRLSTVHSR 62
           +KGDLVLYSGDLFPTEARK PSCP+SHSV RKGKPTHPSAPL  RCGFTKRLSTVHSR
Sbjct: 184 KKGDLVLYSGDLFPTEARKPPSCPRSHSVNRKGKPTHPSAPLVDRCGFTKRLSTVHSR 241

[Close]

BLAST of MELO3C033786.2 vs. TrEMBL
Match: tr|A0A0R0FEU0|A0A0R0FEU0_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_17G185400 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.9e-20
Identity = 53/62 (85.48%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 1  MAAR-KGDLVLYSGDLFPTEARKLPSCPKSHSVKRKGKPTHPSAPLRHRCGFTKRLSTVH 60
          MAAR KGDLVLY GDLFPTEARK PSCP+SHSV RKGKPTHP APL  RCGFTKRL TVH
Sbjct: 1  MAARKKGDLVLYFGDLFPTEARKPPSCPRSHSVNRKGKPTHPLAPLVDRCGFTKRLGTVH 60

Query: 61 SR 62
          SR
Sbjct: 61 SR 62

[Close]

BLAST of MELO3C033786.2 vs. TrEMBL
Match: tr|A0A2G2VMD5|A0A2G2VMD5_CAPBA (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_25951 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.2e-20
Identity = 50/60 (83.33%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1   MAARKGDLVLYSGDLFPTEARKLPSCPKSHSVKRKGKPTHPSAPLRHRCGFTKRLSTVHS 60
           MAARKGDLVLYSGD+FPTE  KLPSCP+S+ V RKGKPTH SAPL  RCGFTKRLSTVHS
Sbjct: 112 MAARKGDLVLYSGDIFPTETHKLPSCPRSYFVNRKGKPTHLSAPLIDRCGFTKRLSTVHS 171

The following BLAST results are available for this feature:

BLAST of MELO3C033786.2 vs. NCBI nr


Match Name	E-value	Identity	Description
PPR89037.1	2.5e-24	93.44	hypothetical protein GOBAR_AA31657 [Gossypium barbadense]	[more]
PNY07357.1	1.5e-21	89.66	hypothetical protein L195_g003851 [Trifolium pratense]	[more]
KRH04768.1	2.9e-20	85.48	hypothetical protein GLYMA_17G185400 [Glycine max]	[more]
PHT34151.1	6.4e-20	83.33	hypothetical protein CQW23_25951 [Capsicum baccatum]	[more]
PHT45870.1	4.6e-18	81.67	hypothetical protein CQW23_15028 [Capsicum baccatum]	[more]

BLAST of MELO3C033786.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C033786.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C033786.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5WDA1\|A0A2P5WDA1_GOSBA	1.7e-24	93.44	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA31657 PE=4 SV...	[more]
tr\|A0A0V0GGV8\|A0A0V0GGV8_SOLCH	1.2e-22	88.52	Putative ovule protein (Fragment) OS=Solanum chacoense OX=4108 PE=4 SV=1	[more]
tr\|A0A2K3NWF0\|A0A2K3NWF0_TRIPR	1.0e-21	89.66	Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g003851 PE=4 SV=1	[more]
tr\|A0A0R0FEU0\|A0A0R0FEU0_SOYBN	1.9e-20	85.48	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_17G185400 PE=4 SV=1	[more]
tr\|A0A2G2VMD5\|A0A2G2VMD5_CAPBA	4.2e-20	83.33	Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_25951 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033786.2.1	MELO3C033786.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..61

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C033786.2	Silver-seed gourd	carmedB0437
MELO3C033786.2	Cucumber (Chinese Long) v3	cucmedB342
MELO3C033786.2	Cucumber (Chinese Long) v3	cucmedB356
MELO3C033786.2	Watermelon (97103) v2	medwmbB029
MELO3C033786.2	Cucumber (Gy14) v2	cgybmedB293
MELO3C033786.2	Cucumber (Gy14) v2	cgybmedB306
MELO3C033786.2	Cucurbita maxima (Rimu)	cmamedB293
MELO3C033786.2	Cucurbita maxima (Rimu)	cmamedB710
MELO3C033786.2	Cucurbita moschata (Rifu)	cmomedB279
MELO3C033786.2	Cucurbita moschata (Rifu)	cmomedB703
MELO3C033786.2	Cucurbita pepo (Zucchini)	cpemedB176
MELO3C033786.2	Cucurbita pepo (Zucchini)	cpemedB407
MELO3C033786.2	Cucurbita pepo (Zucchini)	cpemedB422
MELO3C033786.2	Wild cucumber (PI 183967)	cpimedB331
MELO3C033786.2	Cucumber (Chinese Long) v2	cumedB329
MELO3C033786.2	Cucumber (Chinese Long) v2	cumedB343
MELO3C033786.2	Watermelon (Charleston Gray)	medwcgB034