MELO3C033614.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C033614.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	UDP-sugar transporter, putative
Location	chr09 : 6806118 .. 6806369 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTCTACATCACCGTGTTCTTTTACCAAATCCCAATTCATTTCTACTCTTCACAGCCAAGGCAAGCTCAAATATATCATTGAAGCCATCAAATTTCGAGAAGGATTTGATGCTGCCGGTGTCGGATCCTCCTCGCAGCACTGAAGAGAAAGACCGATTGATCAGAGGCGATGAGAAGCTCTCTAGAGGATCCTCCATGACCAAACGAGGAGCCTATGTTGCTCTCTCTTACACGGCTTACAGATGCGCGTAA

mRNA sequence

GCTCTACATCACCGTGTTCTTTTACCAAATCCCAATTCATTTCTACTCTTCACAGCCAAGGCAAGCTCAAATATATCATTGAAGCCATCAAATTTCGAGAAGGATTTGATGCTGCCGGTGTCGGATCCTCCTCGCAGCACTGAAGAGAAAGACCGATTGATCAGAGGCGATGAGAAGCTCTCTAGAGGATCCTCCATGACCAAACGAGGAGCCTATGTTGCTCTCTCTTACACGGCTTACAGATGCGCGTAA

Coding sequence (CDS)

GCTCTACATCACCGTGTTCTTTTACCAAATCCCAATTCATTTCTACTCTTCACAGCCAAGGCAAGCTCAAATATATCATTGAAGCCATCAAATTTCGAGAAGGATTTGATGCTGCCGGTGTCGGATCCTCCTCGCAGCACTGAAGAGAAAGACCGATTGATCAGAGGCGATGAGAAGCTCTCTAGAGGATCCTCCATGACCAAACGAGGAGCCTATGTTGCTCTCTCTTACACGGCTTACAGATGCGCGTAA

Protein sequence

ALHHRVLLPNPNSFLLFTAKASSNISLKPSNFEKDLMLPVSDPPRSTEEKDRLIRGDEKLSRGSSMTKRGAYVALSYTAYRCA

Homology

[Close]

BLAST of MELO3C033614.2 vs. NCBI nr
Match: XP_008466419.1 (PREDICTED: putative UDP-sugar transporter DDB_G0278631 [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 2.2e-15
Identity = 46/55 (83.64%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 25 ISLKPSNFEKDLMLPVSDPPRSTEEKDRLIRGDEKLSRGSSMTKRGAYVALSYTA 80
          +SLKPSN EK+LMLPVSDPP  TE+KDRLIRGDEKL RGSSMTKRGAY ALSY A
Sbjct: 1  MSLKPSNSEKNLMLPVSDPPHGTEDKDRLIRGDEKLFRGSSMTKRGAYAALSYMA 55

[Close]

BLAST of MELO3C033614.2 vs. NCBI nr
Match: XP_011652478.1 (PREDICTED: putative UDP-sugar transporter DDB_G0278631 [Cucumis sativus] >KGN60093.1 hypothetical protein Csa_3G877640 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 2.9e-15
Identity = 46/55 (83.64%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 25 ISLKPSNFEKDLMLPVSDPPRSTEEKDRLIRGDEKLSRGSSMTKRGAYVALSYTA 80
          +SLKPSN EK+LMLPVSDPP  TEEK+RLIRGDEKL RGSSMTKRGAY ALSY A
Sbjct: 1  MSLKPSNSEKNLMLPVSDPPHGTEEKERLIRGDEKLFRGSSMTKRGAYAALSYMA 55

[Close]

BLAST of MELO3C033614.2 vs. NCBI nr
Match: XP_022142379.1 (nucleotide-sugar uncharacterized transporter 3 [Momordica charantia])

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 25 ISLKPSNFEKDLMLPVSDPPRSTEEKDRLIRGDEKLSRGSSMTKRGAYVALSYTA 80
          +SLK SN EK+L+LPVSDPP  +EEKDRLIRGDEKL RGS+MTKRGAY ALSY A
Sbjct: 1  MSLKASNSEKNLLLPVSDPPHGSEEKDRLIRGDEKLFRGSAMTKRGAYAALSYMA 55

[Close]

BLAST of MELO3C033614.2 vs. NCBI nr
Match: XP_022937346.1 (nucleotide-sugar uncharacterized transporter 3 [Cucurbita moschata])

HSP 1 Score: 84.7 bits (208), Expect = 1.6e-13
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 25 ISLKPSNFEKDLMLPVSDPPRSTEEKDRLIRGDEKLSRGSSMTKRGAYVALSYTA 80
          +SLK SN EK+LMLPVSDPP  +EEK+RLIRGDEKL RGS+MTKRGAY ALSY A
Sbjct: 1  MSLKASNSEKNLMLPVSDPPHGSEEKERLIRGDEKLFRGSAMTKRGAYAALSYMA 55

[Close]

BLAST of MELO3C033614.2 vs. NCBI nr
Match: XP_022976174.1 (nucleotide-sugar uncharacterized transporter 3 [Cucurbita maxima])

HSP 1 Score: 84.7 bits (208), Expect = 1.6e-13
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 25 ISLKPSNFEKDLMLPVSDPPRSTEEKDRLIRGDEKLSRGSSMTKRGAYVALSYTA 80
          +SLK SN EK+LMLPVSDPP  +EEK+RLIRGDEKL RGS+MTKRGAY ALSY A
Sbjct: 1  MSLKASNSEKNLMLPVSDPPHGSEEKERLIRGDEKLFRGSAMTKRGAYAALSYMA 55

[Close]

BLAST of MELO3C033614.2 vs. TAIR10
Match: AT4G32272.2 (Nucleotide/sugar transporter family protein)

HSP 1 Score: 45.4 bits (106), Expect = 1.9e-05
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 37 MLPVSDPPRSTEEKDRLIRGDEKLSRGSSMTKRGAYVALSYTA 80
          +LPVSDPP + E        D++L +GS+MTKRGAY ALSY A
Sbjct: 6  VLPVSDPPLAGENDSDGKGVDDRLFKGSAMTKRGAYAALSYMA 48

[Close]

BLAST of MELO3C033614.2 vs. Swiss-Prot
Match: sp|A8MRY9|NSTU3_ARATH (Nucleotide-sugar uncharacterized transporter 3 OS=Arabidopsis thaliana OX=3702 GN=At4g32272 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.5e-04
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 37 MLPVSDPPRSTEEKDRLIRGDEKLSRGSSMTKRGAYVALSYTA 80
          +LPVSDPP + E        D++L +GS+MTKRGAY ALSY A
Sbjct: 6  VLPVSDPPLAGENDSDGKGVDDRLFKGSAMTKRGAYAALSYMA 48

[Close]

BLAST of MELO3C033614.2 vs. TrEMBL
Match: tr|A0A1S3CR80|A0A1S3CR80_CUCME (putative UDP-sugar transporter DDB_G0278631 OS=Cucumis melo OX=3656 GN=LOC103503832 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-15
Identity = 46/55 (83.64%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 25 ISLKPSNFEKDLMLPVSDPPRSTEEKDRLIRGDEKLSRGSSMTKRGAYVALSYTA 80
          +SLKPSN EK+LMLPVSDPP  TE+KDRLIRGDEKL RGSSMTKRGAY ALSY A
Sbjct: 1  MSLKPSNSEKNLMLPVSDPPHGTEDKDRLIRGDEKLFRGSSMTKRGAYAALSYMA 55

[Close]

BLAST of MELO3C033614.2 vs. TrEMBL
Match: tr|A0A0A0LEB6|A0A0A0LEB6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G877640 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.9e-15
Identity = 46/55 (83.64%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 25 ISLKPSNFEKDLMLPVSDPPRSTEEKDRLIRGDEKLSRGSSMTKRGAYVALSYTA 80
          +SLKPSN EK+LMLPVSDPP  TEEK+RLIRGDEKL RGSSMTKRGAY ALSY A
Sbjct: 1  MSLKPSNSEKNLMLPVSDPPHGTEEKERLIRGDEKLFRGSSMTKRGAYAALSYMA 55

[Close]

BLAST of MELO3C033614.2 vs. TrEMBL
Match: tr|A0A2P5E782|A0A2P5E782_9ROSA (Ubiquitin-related domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_227620 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-09
Identity = 35/53 (66.04%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 25 ISLKPSNFEKDLMLPVSDPPRSTEEKDRLIRGDEKLSRGSSMTKRGAYVALSY 78
          +SLK S+  K+LMLP+SDPPR  EE++RL+RG++KL +GSSMTKRGAY A+SY
Sbjct: 1  MSLKGSSSGKNLMLPISDPPRE-EERERLVRGEDKLFKGSSMTKRGAYAAISY 52

[Close]

BLAST of MELO3C033614.2 vs. TrEMBL
Match: tr|A0A2P5DDJ2|A0A2P5DDJ2_PARAD (Ubiquitin-related domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_074940 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.7e-08
Identity = 34/53 (64.15%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 25 ISLKPSNFEKDLMLPVSDPPRSTEEKDRLIRGDEKLSRGSSMTKRGAYVALSY 78
          +SLK S+  K+ MLP+SDPPR  EE++RL+RG++KL +GSSMTKRGAY A+SY
Sbjct: 1  MSLKGSSSGKNPMLPISDPPRE-EERERLVRGEDKLFKGSSMTKRGAYAAVSY 52

[Close]

BLAST of MELO3C033614.2 vs. TrEMBL
Match: tr|A0A2I4E0G6|A0A2I4E0G6_9ROSI (putative UDP-sugar transporter DDB_G0278631 OS=Juglans regia OX=51240 GN=LOC108985152 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-07
Identity = 32/53 (60.38%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 25 ISLKPSNFEKDLMLPVSDPPRSTEEKDRLIRGDEKLSRGSSMTKRGAYVALSY 78
          +SLK S+   +L+LPV+DPPR  EE+ +L++GDEKL +GS+MTKRGAY A+SY
Sbjct: 1  MSLKASSSSNNLILPVADPPRD-EERGKLLKGDEKLFQGSAMTKRGAYAAISY 52

The following BLAST results are available for this feature:

BLAST of MELO3C033614.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466419.1	2.2e-15	83.64	PREDICTED: putative UDP-sugar transporter DDB_G0278631 [Cucumis melo]	[more]
XP_011652478.1	2.9e-15	83.64	PREDICTED: putative UDP-sugar transporter DDB_G0278631 [Cucumis sativus] >KGN600...	[more]
XP_022142379.1	1.2e-13	78.18	nucleotide-sugar uncharacterized transporter 3 [Momordica charantia]	[more]
XP_022937346.1	1.6e-13	78.18	nucleotide-sugar uncharacterized transporter 3 [Cucurbita moschata]	[more]
XP_022976174.1	1.6e-13	78.18	nucleotide-sugar uncharacterized transporter 3 [Cucurbita maxima]	[more]

BLAST of MELO3C033614.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G32272.2	1.9e-05	55.81	Nucleotide/sugar transporter family protein	[more]

BLAST of MELO3C033614.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A8MRY9\|NSTU3_ARATH	3.5e-04	55.81	Nucleotide-sugar uncharacterized transporter 3 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of MELO3C033614.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CR80\|A0A1S3CR80_CUCME	1.5e-15	83.64	putative UDP-sugar transporter DDB_G0278631 OS=Cucumis melo OX=3656 GN=LOC103503...	[more]
tr\|A0A0A0LEB6\|A0A0A0LEB6_CUCSA	1.9e-15	83.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G877640 PE=4 SV=1	[more]
tr\|A0A2P5E782\|A0A2P5E782_9ROSA	2.0e-09	66.04	Ubiquitin-related domain containing protein OS=Trema orientalis OX=63057 GN=TorR...	[more]
tr\|A0A2P5DDJ2\|A0A2P5DDJ2_PARAD	1.7e-08	64.15	Ubiquitin-related domain containing protein OS=Parasponia andersonii OX=3476 GN=...	[more]
tr\|A0A2I4E0G6\|A0A2I4E0G6_9ROSI	1.1e-07	60.38	putative UDP-sugar transporter DDB_G0278631 OS=Juglans regia OX=51240 GN=LOC1089...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008643	carbohydrate transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033614.2.1	MELO3C033614.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..61

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C033614.2	Wax gourd	medwgoB028
MELO3C033614.2	Cucumber (Gy14) v2	cgybmedB300
MELO3C033614.2	Cucumber (Gy14) v1	cgymedB457
MELO3C033614.2	Cucurbita maxima (Rimu)	cmamedB285
MELO3C033614.2	Cucurbita maxima (Rimu)	cmamedB720
MELO3C033614.2	Cucurbita moschata (Rifu)	cmomedB271
MELO3C033614.2	Cucurbita moschata (Rifu)	cmomedB713
MELO3C033614.2	Cucurbita pepo (Zucchini)	cpemedB182
MELO3C033614.2	Cucurbita pepo (Zucchini)	cpemedB418
MELO3C033614.2	Wild cucumber (PI 183967)	cpimedB340
MELO3C033614.2	Cucumber (Chinese Long) v2	cumedB338
MELO3C033614.2	Bottle gourd (USVL1VR-Ls)	lsimedB171
MELO3C033614.2	Watermelon (Charleston Gray)	medwcgB000
MELO3C033614.2	Watermelon (97103) v1	medwmB001
MELO3C033614.2	Silver-seed gourd	carmedB0694
MELO3C033614.2	Cucumber (Chinese Long) v3	cucmedB351
MELO3C033614.2	Watermelon (97103) v2	medwmbB034