MELO3C033566.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C033566.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionTranslation initiation factor IF-1, chloroplastic
Locationchr09 : 4008604 .. 4008842 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAGAGCAGAAAAGGATTTCTGAAGGTTGCATTACTGAACCACTTACCAATTATATGTTTTGGGTTTGTTTAGATAATGAGGATCCAGTTCTAGATTACGTTTTAGGAAGGATTCGACATAGTTTGATTCATATAATAAGTAATAGAGAGTTAAAATTTTAGCAAGTTGTTACGATTCAACAAAGACTCGAAAACATATAATTTATAGACTACAAAACAAAGATTCGAATGATTAG

mRNA sequence

ATGATAGAGCAGAAAAGGATTTCTGAAGGTTGCATTACTGAACCACTTACCAATTATATGTTTTGGGTTTGTTTAGATAATGAGGATCCAGTTCTAGATTACGTTTTAGGAAGGATTCGACATAGTTTGATTCATATAATAACAAGTTGTTACGATTCAACAAAGACTCGAAAACATATAATTTATAGACTACAAAACAAAGATTCGAATGATTAG

Coding sequence (CDS)

ATGATAGAGCAGAAAAGGATTTCTGAAGGTTGCATTACTGAACCACTTACCAATTATATGTTTTGGGTTTGTTTAGATAATGAGGATCCAGTTCTAGATTACGTTTTAGGAAGGATTCGACATAGTTTGATTCATATAATAACAAGTTGTTACGATTCAACAAAGACTCGAAAACATATAATTTATAGACTACAAAACAAAGATTCGAATGATTAG

Protein sequence

MIEQKRISEGCITEPLTNYMFWVCLDNEDPVLDYVLGRIRHSLIHIITSCYDSTKTRKHIIYRLQNKDSND
Homology
[Close]
BLAST of MELO3C033566.2 vs. NCBI nr
Match: YP_004841818.1 (translational initiation factor 1 [Cucumis melo subsp. melo] >AEM76927.1 translational initiation factor 1 (chloroplast) [Cucumis melo subsp. melo])

HSP 1 Score: 116.3 bits (290), Expect = 4.2e-23
Identity = 56/75 (74.67%), Postives = 62/75 (82.67%), Query Frame = 0 

Query: 1  MIEQKRISEGCITEPLTNYMFWVCLDNEDPVLDYVLGRIRHSLIHII----TSCYDSTKT 60
          M EQKRISEG ITE LTN MFWVCLDNEDP+L YV GRI+HS IHI+     SCYDST+T
Sbjct: 1  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILVKISVSCYDSTRT 60

Query: 61 RKHIIYRLQNKDSND 72
          R+ IIYRL+NKDSND
Sbjct: 61 RRRIIYRLRNKDSND 75

[Close]
BLAST of MELO3C033566.2 vs. NCBI nr
Match: A5J1W9.1 (RecName: Full=Translation initiation factor IF-1, chloroplastic >ABI97451.1 translation initiation factor 1 (chloroplast) [Cucumis sativus] >ABI98780.1 translational initiation factor 1 (chloroplast) [Cucumis sativus] >ARQ16113.1 translation initiation factor 1 (chloroplast) [Cucumis sativus] >ARQ16196.1 translation initiation factor 1 (chloroplast) [Cucumis sativus] >ARQ16279.1 translation initiation factor 1 (chloroplast) [Cucumis sativus] >ARQ16362.1 translation initiation factor 1 (chloroplast) [Cucumis sativus] >AVE15366.1 InfA (chloroplast) [Cucumis sativus var. sativus])

HSP 1 Score: 114.0 bits (284), Expect = 2.1e-22
Identity = 55/75 (73.33%), Postives = 61/75 (81.33%), Query Frame = 0 

Query: 1  MIEQKRISEGCITEPLTNYMFWVCLDNEDPVLDYVLGRIRHSLIHII----TSCYDSTKT 60
          M EQKRISE  ITE LTN MFWVCL+NEDP+L YV GRIRHS IHI+     SCYDST+T
Sbjct: 1  MKEQKRISESLITESLTNDMFWVCLENEDPILGYVSGRIRHSFIHILVKISVSCYDSTRT 60

Query: 61 RKHIIYRLQNKDSND 72
          R+ IIYRL+NKDSND
Sbjct: 61 RRRIIYRLRNKDSND 75

[Close]
BLAST of MELO3C033566.2 vs. NCBI nr
Match: AHM88719.1 (translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM88778.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM88836.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM88893.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM88951.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM89009.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM89068.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM89127.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM89186.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM89245.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM89305.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM89364.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM89423.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM89482.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM89542.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM89601.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM89660.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM89719.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM89778.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM89837.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM89896.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM89955.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM90014.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM90073.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM90132.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM90191.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM90250.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM90309.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM90368.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM90427.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM90486.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM90545.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM90604.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM90663.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM90722.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM90781.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM90840.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM90899.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM90958.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM91017.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM91076.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM91194.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >AHM91309.1 translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 86.3 bits (212), Expect = 4.7e-14
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 0 

Query: 8  SEGCITEPLTNYMFWVCLDNEDPVLDYVLGRIRHSLIHII----TSCYDSTKTRKHII 62
          SEG ITE LTN MFWVCLDNEDP+L YV GRIRHS IHI+     SCYDST+T+  II
Sbjct: 1  SEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHILVKISVSCYDSTRTKGRII 58

[Close]
BLAST of MELO3C033566.2 vs. NCBI nr
Match: NP_054969.2 (translation initiation factor 1 (plastid) [Spinacia oleracea] >P08698.1 RecName: Full=Translation initiation factor IF-1, chloroplastic >CAA27212.1 unnamed protein product (chloroplast) [Spinacia oleracea])

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13
Identity = 49/79 (62.03%), Postives = 53/79 (67.09%), Query Frame = 0 

Query: 1  MIEQKRISEGCITEPLTNYMFWVCLDNEDPVLDYVLGRIRHSLIHII--------TSCYD 60
          M EQK I EG ITE L N MFWV LDNEDP+L YV GRIR S I I+         S YD
Sbjct: 1  MKEQKWIHEGLITESLPNGMFWVRLDNEDPILGYVSGRIRRSSIRILPGDRVKIEVSRYD 60

Query: 61 STKTRKHIIYRLQNKDSND 72
          ST+ R  IIYRL+NKDSND
Sbjct: 61 STRGR--IIYRLRNKDSND 77

[Close]
BLAST of MELO3C033566.2 vs. NCBI nr
Match: YP_009488970.1 (InfA (chloroplast) [Nuphar pumila] >YP_009489055.1 InfA (chloroplast) [Nuphar shimadae] >AWD77799.1 InfA (chloroplast) [Nuphar pumila] >AWD77884.1 InfA (chloroplast) [Nuphar shimadae])

HSP 1 Score: 83.2 bits (204), Expect = 3.9e-13
Identity = 49/79 (62.03%), Postives = 52/79 (65.82%), Query Frame = 0 

Query: 1  MIEQKRISEGCITEPLTNYMFWVCLDNEDPVLDYVLGRIRHSLIHII--------TSCYD 60
          M EQK I EG ITE L N MFWV LDNED VL YV GRIR S I I+         S YD
Sbjct: 1  MKEQKLIHEGLITESLPNGMFWVRLDNEDQVLGYVSGRIRRSFIRILPGDRVKIEVSRYD 60

Query: 61 STKTRKHIIYRLQNKDSND 72
          ST+ R  IIYRL+NKDSND
Sbjct: 61 STRGR--IIYRLRNKDSND 77

[Close]
BLAST of MELO3C033566.2 vs. TAIR10
Match: AT4G11175.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-08
Identity = 31/72 (43.06%), Postives = 43/72 (59.72%), Query Frame = 0 

Query: 5   KRISEGCITEPLTNYMFWVCLDNEDPVLDYVLGRIRHSLIHII--------TSCYDSTKT 64
           K + EG +TE L N MF V L+N D +L Y+ G+IR + I I+         S YDSTK 
Sbjct: 72  KTVIEGLVTESLPNGMFRVDLENGDNILGYICGKIRKNFIRILPGDKVKVEMSVYDSTKG 131

Query: 65  RKHIIYRLQNKD 69
           R  II+R+ ++D
Sbjct: 132 R--IIFRMSSRD 141

[Close]
BLAST of MELO3C033566.2 vs. Swiss-Prot
Match: sp|A5J1W9|IF1C_CUCSA (Translation initiation factor IF-1, chloroplastic OS=Cucumis sativus OX=3659 GN=infA PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 6.8e-25
Identity = 55/75 (73.33%), Postives = 61/75 (81.33%), Query Frame = 0 

Query: 1  MIEQKRISEGCITEPLTNYMFWVCLDNEDPVLDYVLGRIRHSLIHII----TSCYDSTKT 60
          M EQKRISE  ITE LTN MFWVCL+NEDP+L YV GRIRHS IHI+     SCYDST+T
Sbjct: 1  MKEQKRISESLITESLTNDMFWVCLENEDPILGYVSGRIRHSFIHILVKISVSCYDSTRT 60

Query: 61 RKHIIYRLQNKDSND 72
          R+ IIYRL+NKDSND
Sbjct: 61 RRRIIYRLRNKDSND 75

[Close]
BLAST of MELO3C033566.2 vs. Swiss-Prot
Match: sp|P08698|IF1C_SPIOL (Translation initiation factor IF-1, chloroplastic OS=Spinacia oleracea OX=3562 GN=infA PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.4e-16
Identity = 49/79 (62.03%), Postives = 53/79 (67.09%), Query Frame = 0 

Query: 1  MIEQKRISEGCITEPLTNYMFWVCLDNEDPVLDYVLGRIRHSLIHII--------TSCYD 60
          M EQK I EG ITE L N MFWV LDNEDP+L YV GRIR S I I+         S YD
Sbjct: 1  MKEQKWIHEGLITESLPNGMFWVRLDNEDPILGYVSGRIRRSSIRILPGDRVKIEVSRYD 60

Query: 61 STKTRKHIIYRLQNKDSND 72
          ST+ R  IIYRL+NKDSND
Sbjct: 61 STRGR--IIYRLRNKDSND 77

[Close]
BLAST of MELO3C033566.2 vs. Swiss-Prot
Match: sp|Q95GN8|IF1C_CABCA (Translation initiation factor IF-1, chloroplastic OS=Cabomba caroliniana OX=4426 GN=infA PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.2e-15
Identity = 49/79 (62.03%), Postives = 52/79 (65.82%), Query Frame = 0 

Query: 1  MIEQKRISEGCITEPLTNYMFWVCLDNEDPVLDYVLGRIRHSLIHII--------TSCYD 60
          M EQK I EG ITE L N MFWV LDNED VL YV GRIR S I I+         S YD
Sbjct: 1  MKEQKLIHEGLITESLPNGMFWVRLDNEDLVLGYVSGRIRRSFIRILPGDRVKIEVSRYD 60

Query: 61 STKTRKHIIYRLQNKDSND 72
          ST+ R  IIYRL+NKDSND
Sbjct: 61 STRGR--IIYRLRNKDSND 77

[Close]
BLAST of MELO3C033566.2 vs. Swiss-Prot
Match: sp|A1XFZ0|IF1C_NUPAD (Translation initiation factor IF-1, chloroplastic OS=Nuphar advena OX=77108 GN=infA PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.2e-15
Identity = 49/79 (62.03%), Postives = 52/79 (65.82%), Query Frame = 0 

Query: 1  MIEQKRISEGCITEPLTNYMFWVCLDNEDPVLDYVLGRIRHSLIHII--------TSCYD 60
          M EQK I EG ITE L N MFWV LDNED VL YV GRIR S I I+         S YD
Sbjct: 1  MKEQKLIHEGLITESLPNGMFWVRLDNEDLVLGYVSGRIRRSFIRILPGDRVKIEVSRYD 60

Query: 61 STKTRKHIIYRLQNKDSND 72
          ST+ R  IIYRL+NKDSND
Sbjct: 61 STRGR--IIYRLRNKDSND 77

[Close]
BLAST of MELO3C033566.2 vs. Swiss-Prot
Match: sp|Q6EW17|IF1C_NYMAL (Translation initiation factor IF-1, chloroplastic OS=Nymphaea alba OX=34301 GN=infA PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.2e-15
Identity = 49/79 (62.03%), Postives = 52/79 (65.82%), Query Frame = 0 

Query: 1  MIEQKRISEGCITEPLTNYMFWVCLDNEDPVLDYVLGRIRHSLIHII--------TSCYD 60
          M EQK I EG ITE L N MFWV LDNED VL YV GRIR S I I+         S YD
Sbjct: 1  MKEQKLIHEGLITESLPNGMFWVRLDNEDLVLGYVSGRIRRSFIRILPGDRVKIEVSRYD 60

Query: 61 STKTRKHIIYRLQNKDSND 72
          ST+ R  IIYRL+NKDSND
Sbjct: 61 STRGR--IIYRLRNKDSND 77

[Close]
BLAST of MELO3C033566.2 vs. TrEMBL
Match: tr|G3ETT2|G3ETT2_CUCME (Translational initiation factor 1 OS=Cucumis melo subsp. melo OX=412675 GN=infA PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.8e-23
Identity = 56/75 (74.67%), Postives = 62/75 (82.67%), Query Frame = 0 

Query: 1  MIEQKRISEGCITEPLTNYMFWVCLDNEDPVLDYVLGRIRHSLIHII----TSCYDSTKT 60
          M EQKRISEG ITE LTN MFWVCLDNEDP+L YV GRI+HS IHI+     SCYDST+T
Sbjct: 1  MKEQKRISEGLITESLTNDMFWVCLDNEDPILGYVSGRIQHSFIHILVKISVSCYDSTRT 60

Query: 61 RKHIIYRLQNKDSND 72
          R+ IIYRL+NKDSND
Sbjct: 61 RRRIIYRLRNKDSND 75

[Close]
BLAST of MELO3C033566.2 vs. TrEMBL
Match: tr|A0A1X9Q1P3|A0A1X9Q1P3_CUCSA (Translation initiation factor 1 OS=Cucumis sativus OX=3659 GN=infA PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-22
Identity = 55/75 (73.33%), Postives = 61/75 (81.33%), Query Frame = 0 

Query: 1  MIEQKRISEGCITEPLTNYMFWVCLDNEDPVLDYVLGRIRHSLIHII----TSCYDSTKT 60
          M EQKRISE  ITE LTN MFWVCL+NEDP+L YV GRIRHS IHI+     SCYDST+T
Sbjct: 1  MKEQKRISESLITESLTNDMFWVCLENEDPILGYVSGRIRHSFIHILVKISVSCYDSTRT 60

Query: 61 RKHIIYRLQNKDSND 72
          R+ IIYRL+NKDSND
Sbjct: 61 RRRIIYRLRNKDSND 75

[Close]
BLAST of MELO3C033566.2 vs. TrEMBL
Match: tr|X2F7S7|X2F7S7_LAGSI (Translational initiation factor 1 (Fragment) OS=Lagenaria siceraria OX=3668 GN=infA PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.1e-14
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 0 

Query: 8  SEGCITEPLTNYMFWVCLDNEDPVLDYVLGRIRHSLIHII----TSCYDSTKTRKHII 62
          SEG ITE LTN MFWVCLDNEDP+L YV GRIRHS IHI+     SCYDST+T+  II
Sbjct: 1  SEGLITESLTNGMFWVCLDNEDPILGYVSGRIRHSFIHILVKISVSCYDSTRTKGRII 58

[Close]
BLAST of MELO3C033566.2 vs. TrEMBL
Match: tr|A0A2S1FYC3|A0A2S1FYC3_9MAGN (InfA OS=Nuphar pumila OX=38861 GN=infA PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.6e-13
Identity = 49/79 (62.03%), Postives = 52/79 (65.82%), Query Frame = 0 

Query: 1  MIEQKRISEGCITEPLTNYMFWVCLDNEDPVLDYVLGRIRHSLIHII--------TSCYD 60
          M EQK I EG ITE L N MFWV LDNED VL YV GRIR S I I+         S YD
Sbjct: 1  MKEQKLIHEGLITESLPNGMFWVRLDNEDQVLGYVSGRIRRSFIRILPGDRVKIEVSRYD 60

Query: 61 STKTRKHIIYRLQNKDSND 72
          ST+ R  IIYRL+NKDSND
Sbjct: 61 STRGR--IIYRLRNKDSND 77

[Close]
BLAST of MELO3C033566.2 vs. TrEMBL
Match: tr|A0A2S1FYJ8|A0A2S1FYJ8_9MAGN (InfA OS=Nuphar shimadae OX=54802 GN=infA PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.6e-13
Identity = 49/79 (62.03%), Postives = 52/79 (65.82%), Query Frame = 0 

Query: 1  MIEQKRISEGCITEPLTNYMFWVCLDNEDPVLDYVLGRIRHSLIHII--------TSCYD 60
          M EQK I EG ITE L N MFWV LDNED VL YV GRIR S I I+         S YD
Sbjct: 1  MKEQKLIHEGLITESLPNGMFWVRLDNEDQVLGYVSGRIRRSFIRILPGDRVKIEVSRYD 60

Query: 61 STKTRKHIIYRLQNKDSND 72
          ST+ R  IIYRL+NKDSND
Sbjct: 61 STRGR--IIYRLRNKDSND 77

The following BLAST results are available for this feature:
BLAST of MELO3C033566.2 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_004841818.14.2e-2374.67translational initiation factor 1 [Cucumis melo subsp. melo] >AEM76927.1 transla... [more]
A5J1W9.12.1e-2273.33RecName: Full=Translation initiation factor IF-1, chloroplastic >ABI97451.1 tran... [more]
AHM88719.14.7e-1470.69translational initiation factor 1, partial (chloroplast) [Lagenaria siceraria] >... [more]
NP_054969.21.4e-1362.03translation initiation factor 1 (plastid) [Spinacia oleracea] >P08698.1 RecName:... [more]
YP_009488970.13.9e-1362.03InfA (chloroplast) [Nuphar pumila] >YP_009489055.1 InfA (chloroplast) [Nuphar sh... [more]
BLAST of MELO3C033566.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G11175.13.6e-0843.06Nucleic acid-binding, OB-fold-like protein[more]
BLAST of MELO3C033566.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|A5J1W9|IF1C_CUCSA6.8e-2573.33Translation initiation factor IF-1, chloroplastic OS=Cucumis sativus OX=3659 GN=... [more]
sp|P08698|IF1C_SPIOL4.4e-1662.03Translation initiation factor IF-1, chloroplastic OS=Spinacia oleracea OX=3562 G... [more]
sp|Q95GN8|IF1C_CABCA2.2e-1562.03Translation initiation factor IF-1, chloroplastic OS=Cabomba caroliniana OX=4426... [more]
sp|A1XFZ0|IF1C_NUPAD2.2e-1562.03Translation initiation factor IF-1, chloroplastic OS=Nuphar advena OX=77108 GN=i... [more]
sp|Q6EW17|IF1C_NYMAL2.2e-1562.03Translation initiation factor IF-1, chloroplastic OS=Nymphaea alba OX=34301 GN=i... [more]
BLAST of MELO3C033566.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|G3ETT2|G3ETT2_CUCME2.8e-2374.67Translational initiation factor 1 OS=Cucumis melo subsp. melo OX=412675 GN=infA ... [more]
tr|A0A1X9Q1P3|A0A1X9Q1P3_CUCSA1.4e-2273.33Translation initiation factor 1 OS=Cucumis sativus OX=3659 GN=infA PE=4 SV=1[more]
tr|X2F7S7|X2F7S7_LAGSI3.1e-1470.69Translational initiation factor 1 (Fragment) OS=Lagenaria siceraria OX=3668 GN=i... [more]
tr|A0A2S1FYC3|A0A2S1FYC3_9MAGN2.6e-1362.03InfA OS=Nuphar pumila OX=38861 GN=infA PE=4 SV=1[more]
tr|A0A2S1FYJ8|A0A2S1FYJ8_9MAGN2.6e-1362.03InfA OS=Nuphar shimadae OX=54802 GN=infA PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR004368TIF_IF1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0006413 translational initiation
cellular_component GO:0009507 chloroplast
cellular_component GO:0009536 plastid
molecular_function GO:0003723 RNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003743 translation initiation factor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033566.2.1MELO3C033566.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:2.40.50.140coord: 2..65
e-value: 5.2E-9
score: 37.7
IPR004368Translation initiation factor IF-1PANTHERPTHR33370FAMILY NOT NAMEDcoord: 3..69
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILYSSF50249Nucleic acid-binding proteinscoord: 3..63

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C033566.2Wax gourdmedwgoB020
MELO3C033566.2Wax gourdmedwgoB043
MELO3C033566.2Cucumber (Gy14) v2cgybmedB001
MELO3C033566.2Cucumber (Gy14) v2cgybmedB300
MELO3C033566.2Cucurbita maxima (Rimu)cmamedB205
MELO3C033566.2Cucumber (Gy14) v1cgymedB111
MELO3C033566.2Cucumber (Gy14) v1cgymedB331
MELO3C033566.2Cucurbita maxima (Rimu)cmamedB285
MELO3C033566.2Cucurbita maxima (Rimu)cmamedB404
MELO3C033566.2Cucurbita maxima (Rimu)cmamedB720
MELO3C033566.2Cucurbita moschata (Rifu)cmomedB271
MELO3C033566.2Cucurbita moschata (Rifu)cmomedB713
MELO3C033566.2Cucurbita pepo (Zucchini)cpemedB022
MELO3C033566.2Cucurbita pepo (Zucchini)cpemedB182
MELO3C033566.2Cucurbita pepo (Zucchini)cpemedB418
MELO3C033566.2Wild cucumber (PI 183967)cpimedB000
MELO3C033566.2Wild cucumber (PI 183967)cpimedB340
MELO3C033566.2Cucumber (Chinese Long) v2cumedB000
MELO3C033566.2Cucumber (Chinese Long) v2cumedB338
MELO3C033566.2Melon (DHL92) v3.6.1medmedB008
MELO3C033566.2Bottle gourd (USVL1VR-Ls)lsimedB171
MELO3C033566.2Bottle gourd (USVL1VR-Ls)lsimedB172
MELO3C033566.2Watermelon (Charleston Gray)medwcgB000
MELO3C033566.2Watermelon (97103) v1medwmB001
MELO3C033566.2Silver-seed gourdcarmedB0270
MELO3C033566.2Silver-seed gourdcarmedB0694
MELO3C033566.2Cucumber (Chinese Long) v3cucmedB000
MELO3C033566.2Cucumber (Chinese Long) v3cucmedB351
MELO3C033566.2Watermelon (97103) v2medwmbB034