MELO3C033534.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C033534.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Description60S ribosomal protein L32, putative
Locationchr09 : 1148375 .. 1148903 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGTCGAAGTTGGGATGGCCTAAGGAAACCCTAGTATCTATATAAGCGAAAATGGCGGTGCCTTTGCTGTCGAAGAAGATCGTGAATAAGAGGACAAAGAAGTTCAAGAGGCCTCAGAGTGATCGAAAGATCTTCATCAAGGAAAATTGAAGAAGAACCGAGGGTATTGATTCTAGAGTGAGAAGAAAGTTTAAAGGACGCACATTGATGCCAAATATTGGTACAGTACCGACAAGAAGACCTGTCACTACCTGCCTAATGGGATCAAGAAGTTCATTGTTCATAATGTCAAGGAGCTCAAACTGTTGATGATGCACAACAGGATATACTGTGCCGAGATTGCTCATGATGTTTCAATAGAGAATAGGAAAGAGATTCTAGAGAGGGCAGCTCAACTTGATGTTGCAGTTACCAACAAGCTTGCTAGGTTGCACAGCCAAGAAGATGAATGAACAATTTAGGTCCTTAAATGCCAGTTTTCTTCATGCTACAATAAGACTTCGTTATTATATATCCTTTTTTGGTTCA

mRNA sequence

ATTGTCGAAGTTGGGATGGCCTAAGGAAACCCTAGTATCTATATAAGCGAAAATGGCGGTGCCTTTGCTGTCGAAGAAGATCGTGAATAAGAGGACAAAGAAGTTCAAGAGGCCTCAGAGTGATCGAAAGATCTTCATCAAGGAAAATTGAAGAAGAACCGAGGGTATTGATTCTAGAGTGAGAAGAAAGTTTAAAGGACGCACATTGATGCCAAATATTGGTACAGTACCGACAAGAAGACCTGTCACTACCTGCCTAATGGGATCAAGAAGTTCATTGTTCATAATGTCAAGGAGCTCAAACTGTTGATGATGCACAACAGGATATACTGTGCCGAGATTGCTCATGATGTTTCAATAGAGAATAGGAAAGAGATTCTAGAGAGGGCAGCTCAACTTGATGTTGCAGTTACCAACAAGCTTGCTAGGTTGCACAGCCAAGAAGATGAATGAACAATTTAGGTCCTTAAATGCCAGTTTTCTTCATGCTACAATAAGACTTCGTTATTATATATCCTTTTTTGGTTCA

Coding sequence (CDS)

ATGATGCACAACAGGATATACTGTGCCGAGATTGCTCATGATGTTTCAATAGAGAATAGGAAAGAGATTCTAGAGAGGGCAGCTCAACTTGATGTTGCAGTTACCAACAAGCTTGCTAGGTTGCACAGCCAAGAAGATGAATGA

Protein sequence

MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE
Homology
[Close]
BLAST of MELO3C033534.2 vs. NCBI nr
Match: KGN52581.1 (hypothetical protein Csa_5G644575 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-13
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 1   MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 48
           MMHN IYCAEIAHDVSIEN KEILERAAQLDV VTNKLARL+SQ+DE
Sbjct: 56  MMHNSIYCAEIAHDVSIENGKEILERAAQLDVVVTNKLARLYSQDDE 102

[Close]
BLAST of MELO3C033534.2 vs. NCBI nr
Match: XP_021600018.1 (60S ribosomal protein L32-1 [Manihot esculenta] >OAY25061.1 hypothetical protein MANES_17G064800 [Manihot esculenta])

HSP 1 Score: 82.4 bits (202), Expect = 4.5e-13
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 1   MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 48
           MMHNRIYCAEIAHDVS   RKEI+ERAAQLDV VTNKLARL SQEDE
Sbjct: 87  MMHNRIYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLARLRSQEDE 133

[Close]
BLAST of MELO3C033534.2 vs. NCBI nr
Match: RAL47776.1 (hypothetical protein DM860_012401 [Cuscuta australis])

HSP 1 Score: 82.0 bits (201), Expect = 5.8e-13
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 1   MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 48
           MMHNR YCAEIAHDVS   RKEI+ERAAQLDVAVTNKLARL SQEDE
Sbjct: 95  MMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVAVTNKLARLRSQEDE 141

[Close]
BLAST of MELO3C033534.2 vs. NCBI nr
Match: XP_017699993.1 (PREDICTED: 60S ribosomal protein L32-1-like, partial [Phoenix dactylifera])

HSP 1 Score: 81.6 bits (200), Expect = 7.6e-13
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 1  MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 48
          MMHNR YCAEIAHDVS   RKEI+ERAAQLD+AVTNKLARL SQEDE
Sbjct: 29 MMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIAVTNKLARLRSQEDE 75

[Close]
BLAST of MELO3C033534.2 vs. NCBI nr
Match: XP_006352982.1 (PREDICTED: 60S ribosomal protein L32-1 isoform X1 [Solanum tuberosum] >XP_006354243.1 PREDICTED: 60S ribosomal protein L32-1 [Solanum tuberosum] >XP_006358333.1 PREDICTED: 60S ribosomal protein L32-1 [Solanum tuberosum] >XP_015166632.1 PREDICTED: 60S ribosomal protein L32-1 isoform X2 [Solanum tuberosum])

HSP 1 Score: 81.3 bits (199), Expect = 9.9e-13
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 1   MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 48
           MMHNR YCAEIAH+VS   RKEI+ERAAQLDV +TNKLARLHSQEDE
Sbjct: 87  MMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVITNKLARLHSQEDE 133

[Close]
BLAST of MELO3C033534.2 vs. TAIR10
Match: AT4G18100.1 (Ribosomal protein L32e)

HSP 1 Score: 74.3 bits (181), Expect = 2.2e-14
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 1   MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 48
           MMHNR YCAEIAH+VS + RK I+ERA+QLDV VTN+LARL SQEDE
Sbjct: 87  MMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLARLRSQEDE 133

[Close]
BLAST of MELO3C033534.2 vs. TAIR10
Match: AT5G46430.1 (Ribosomal protein L32e)

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-13
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 0 

Query: 1   MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 48
           MMHNR YCAEIAH++S + RK I+ERA+QLDV V+NKL RL SQEDE
Sbjct: 87  MMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGRLRSQEDE 133

[Close]
BLAST of MELO3C033534.2 vs. Swiss-Prot
Match: sp|P49211|RL321_ARATH (60S ribosomal protein L32-1 OS=Arabidopsis thaliana OX=3702 GN=RPL32A PE=2 SV=2)

HSP 1 Score: 74.3 bits (181), Expect = 4.0e-13
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 1   MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 48
           MMHNR YCAEIAH+VS + RK I+ERA+QLDV VTN+LARL SQEDE
Sbjct: 87  MMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLARLRSQEDE 133

[Close]
BLAST of MELO3C033534.2 vs. Swiss-Prot
Match: sp|Q9FHG2|RL322_ARATH (60S ribosomal protein L32-2 OS=Arabidopsis thaliana OX=3702 GN=RPL32B PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.0e-12
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 0 

Query: 1   MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 48
           MMHNR YCAEIAH++S + RK I+ERA+QLDV V+NKL RL SQEDE
Sbjct: 87  MMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGRLRSQEDE 133

[Close]
BLAST of MELO3C033534.2 vs. Swiss-Prot
Match: sp|P51421|RL32_MAIZE (60S ribosomal protein L32 (Fragment) OS=Zea mays OX=4577 GN=RPL32 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.5e-09
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 7  YCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 48
          YCAEIAH+VS + RKEI+ERAAQLD+ V  KLAR  SQEDE
Sbjct: 2  YCAEIAHNVSTKKRKEIVERAAQLDIVVPTKLARAPSQEDE 42

[Close]
BLAST of MELO3C033534.2 vs. Swiss-Prot
Match: sp|Q962T1|RL32_SPOFR (60S ribosomal protein L32 OS=Spodoptera frugiperda OX=7108 GN=RpL32 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.5e-09
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 1   MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 48
           MM NR YCAEIAH VS + RK I+ERA QL + VTN  ARL SQE+E
Sbjct: 88  MMQNRKYCAEIAHGVSSKKRKTIVERAQQLSIRVTNSAARLRSQENE 134

[Close]
BLAST of MELO3C033534.2 vs. Swiss-Prot
Match: sp|Q90YT6|RL32_ICTPU (60S ribosomal protein L32 OS=Ictalurus punctatus OX=7998 GN=rpl32 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 7.7e-09
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 0 

Query: 1   MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 48
           +M N+ YCAEIAH+VS +NRK I+ERAAQL + VTN  ARL S+E+E
Sbjct: 89  LMSNKSYCAEIAHNVSSKNRKVIVERAAQLAIKVTNPNARLRSEENE 135

[Close]
BLAST of MELO3C033534.2 vs. TrEMBL
Match: tr|A0A0A0KXQ5|A0A0A0KXQ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G644575 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.8e-14
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 1   MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 48
           MMHN IYCAEIAHDVSIEN KEILERAAQLDV VTNKLARL+SQ+DE
Sbjct: 56  MMHNSIYCAEIAHDVSIENGKEILERAAQLDVVVTNKLARLYSQDDE 102

[Close]
BLAST of MELO3C033534.2 vs. TrEMBL
Match: tr|A0A2C9U6K5|A0A2C9U6K5_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G064800 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.9e-13
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 1   MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 48
           MMHNRIYCAEIAHDVS   RKEI+ERAAQLDV VTNKLARL SQEDE
Sbjct: 87  MMHNRIYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLARLRSQEDE 133

[Close]
BLAST of MELO3C033534.2 vs. TrEMBL
Match: tr|A0A2H3ZV20|A0A2H3ZV20_PHODC (60S ribosomal protein L32-1-like OS=Phoenix dactylifera OX=42345 GN=LOC108511551 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.0e-13
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 1  MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 48
          MMHNR YCAEIAHDVS   RKEI+ERAAQLD+AVTNKLARL SQEDE
Sbjct: 29 MMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIAVTNKLARLRSQEDE 75

[Close]
BLAST of MELO3C033534.2 vs. TrEMBL
Match: tr|Q3HVK3|Q3HVK3_SOLTU (Ly200-like protein OS=Solanum tuberosum OX=4113 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.6e-13
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 1   MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 48
           MMHNR YCAEIAH+VS   RKEI+ERAAQLDV +TNKLARLHSQEDE
Sbjct: 87  MMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVITNKLARLHSQEDE 133

[Close]
BLAST of MELO3C033534.2 vs. TrEMBL
Match: tr|A0A0V0H7N8|A0A0V0H7N8_SOLCH (Putative 60S ribosomal protein L32-1-like OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.6e-13
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 1   MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 48
           MMHNR YCAEIAH+VS   RKEI+ERAAQLDV +TNKLARLHSQEDE
Sbjct: 87  MMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVITNKLARLHSQEDE 133

The following BLAST results are available for this feature:
BLAST of MELO3C033534.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52581.11.2e-1389.36hypothetical protein Csa_5G644575 [Cucumis sativus][more]
XP_021600018.14.5e-1387.2360S ribosomal protein L32-1 [Manihot esculenta] >OAY25061.1 hypothetical protein... [more]
RAL47776.15.8e-1387.23hypothetical protein DM860_012401 [Cuscuta australis][more]
XP_017699993.17.6e-1385.11PREDICTED: 60S ribosomal protein L32-1-like, partial [Phoenix dactylifera][more]
XP_006352982.19.9e-1382.98PREDICTED: 60S ribosomal protein L32-1 isoform X1 [Solanum tuberosum] >XP_006354... [more]
BLAST of MELO3C033534.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G18100.12.2e-1476.60Ribosomal protein L32e[more]
AT5G46430.11.1e-1372.34Ribosomal protein L32e[more]
BLAST of MELO3C033534.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P49211|RL321_ARATH4.0e-1376.6060S ribosomal protein L32-1 OS=Arabidopsis thaliana OX=3702 GN=RPL32A PE=2 SV=2[more]
sp|Q9FHG2|RL322_ARATH2.0e-1272.3460S ribosomal protein L32-2 OS=Arabidopsis thaliana OX=3702 GN=RPL32B PE=2 SV=1[more]
sp|P51421|RL32_MAIZE4.5e-0973.1760S ribosomal protein L32 (Fragment) OS=Zea mays OX=4577 GN=RPL32 PE=2 SV=1[more]
sp|Q962T1|RL32_SPOFR4.5e-0965.9660S ribosomal protein L32 OS=Spodoptera frugiperda OX=7108 GN=RpL32 PE=2 SV=1[more]
sp|Q90YT6|RL32_ICTPU7.7e-0963.8360S ribosomal protein L32 OS=Ictalurus punctatus OX=7998 GN=rpl32 PE=2 SV=1[more]
BLAST of MELO3C033534.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KXQ5|A0A0A0KXQ5_CUCSA7.8e-1489.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G644575 PE=4 SV=1[more]
tr|A0A2C9U6K5|A0A2C9U6K5_MANES2.9e-1387.23Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G064800 PE=4 SV=... [more]
tr|A0A2H3ZV20|A0A2H3ZV20_PHODC5.0e-1385.1160S ribosomal protein L32-1-like OS=Phoenix dactylifera OX=42345 GN=LOC108511551... [more]
tr|Q3HVK3|Q3HVK3_SOLTU6.6e-1382.98Ly200-like protein OS=Solanum tuberosum OX=4113 PE=2 SV=1[more]
tr|A0A0V0H7N8|A0A0V0H7N8_SOLCH6.6e-1382.98Putative 60S ribosomal protein L32-1-like OS=Solanum chacoense OX=4108 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR036351Ribosomal_L32e_sf
IPR001515Ribosomal_L32e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033534.2.1MELO3C033534.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001515Ribosomal protein L32ePFAMPF01655Ribosomal_L32ecoord: 1..36
e-value: 7.4E-11
score: 42.3
IPR001515Ribosomal protein L32ePANTHERPTHR2341360S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT Ncoord: 1..47
IPR001515Ribosomal protein L32ePRODOMPD003823coord: 1..36
e-value: 6.0E-11
score: 156.0
IPR036351Ribosomal protein L32e superfamilySUPERFAMILYSSF52042Ribosomal protein L32ecoord: 2..45

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C033534.2Cucsa.238030Cucumber (Gy14) v1cgymedB399
MELO3C033534.2CsGy5G029470Cucumber (Gy14) v2cgybmedB299
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C033534.2Cucumber (Chinese Long) v3cucmedB350
MELO3C033534.2Watermelon (97103) v2medwmbB014
MELO3C033534.2Wax gourdmedwgoB020
MELO3C033534.2Wax gourdmedwgoB027
MELO3C033534.2Cucumber (Gy14) v2cgybmedB297
MELO3C033534.2Cucurbita maxima (Rimu)cmamedB285
MELO3C033534.2Cucurbita maxima (Rimu)cmamedB714
MELO3C033534.2Cucurbita moschata (Rifu)cmomedB271
MELO3C033534.2Cucurbita moschata (Rifu)cmomedB705
MELO3C033534.2Cucurbita pepo (Zucchini)cpemedB182
MELO3C033534.2Cucurbita pepo (Zucchini)cpemedB408
MELO3C033534.2Cucurbita pepo (Zucchini)cpemedB409
MELO3C033534.2Wild cucumber (PI 183967)cpimedB334
MELO3C033534.2Wild cucumber (PI 183967)cpimedB339
MELO3C033534.2Cucumber (Chinese Long) v2cumedB333
MELO3C033534.2Cucumber (Chinese Long) v2cumedB337
MELO3C033534.2Bottle gourd (USVL1VR-Ls)lsimedB243
MELO3C033534.2Watermelon (Charleston Gray)medwcgB008
MELO3C033534.2Watermelon (97103) v1medwmB037
MELO3C033534.2Silver-seed gourdcarmedB0019
MELO3C033534.2Silver-seed gourdcarmedB0017
MELO3C033534.2Silver-seed gourdcarmedB0270