MELO3C033483.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C033483.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionLOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like
Locationchr08 : 32759466 .. 32760189 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTTCTTCTCAATAACATGCGACTCTGACTCTTAGGAGACGTGCGCAGTCTCGACTCTTGGAGTTAGAGCGCCACGTTGCAATAAATGGGCGCATTCCGATAACGATCGCCCCTTGAGCGGAGAAGCCTATTTCCCCACACGTCGTTCACTTTAGCCAGGCCATAGGTGTGTACGTGCGAAAGATATTTCTCGTTCGCTGTCTTAAGTAGGCGGACGTTGGGAGAGAAGACATTGAGATCGTCAAGGGCGACCTCCAAGTAATTAAATTCACTACACATTTATATATGATTTCATTTGAAACATATCTAACTTTAACCAATCTAATGTGTTATGTTTGTAATGTGTAACGATTGTTTGCACTTGATTTCAATGATCAAGCAATGAACAGGTTTATTAAGCATCAAATGTTCACGACCTTTAAAGAGTTCCGGACCGACTGTCATAGACATTTCAAAAAGTACAGCGACCTGGAGGAGGCTCGTGTCAACCCACCAAATGCATTGGTTGGATGTCATGAGGATTGGCACTTCCTCTGCGACCACTATATCAGTCGTGCATTCCAAGTATTTGTCATGATTAATTATGATAACAAGTTTTAATATGTATAAGAAATAAACAATATAATTGTTTTAATGTAGGAGCAATCACGGACGAACAAGGCTGCTAGACAGAAGCAGCCTTACAATCATAGTAGCGGGTCCAAGTCGTTTCTACAACGATAG

mRNA sequence

GTCTTCTTCTCAATAACATGCGACTCTGACTCTTAGGAGACGTGCGCAGTCTCGACTCTTGGAGTTAGAGCGCCACGTTGCAATAAATGGGCGCATTCCGATAACGATCGCCCCTTGAGCGGAGAAGCCTATTTCCCCACACGTCGTTCACTTTAGCCAGGCCATAGGTGTGTACGTGCGAAAGATATTTCTCGTTCGCTGTCTTAAGTAGGCGGACGTTGGGAGAGAAGACATTGAGATCGTCAAGGGCGACCTCCAAGTAATTAAATTCACTACACATTTATATATGATTTCATTTGAAACATATCTAACTTTAACCAATCTAATGTGTTATGTTTGTAATGTGTAACGATTGTTTGCACTTGATTTCAATGATCAAGCAATGAACAGGTTTATTAAGCATCAAATGTTCACGACCTTTAAAGAGTTCCGGACCGACTGTCATAGACATTTCAAAAAGTACAGCGACCTGGAGGAGGCTCGTGTCAACCCACCAAATGCATTGGTTGGATGTCATGAGGATTGGCACTTCCTCTGCGACCACTATATCAGTCGTGCATTCCAAGAGCAATCACGGACGAACAAGGCTGCTAGACAGAAGCAGCCTTACAATCATAGTAGCGGGTCCAAGTCGTTTCTACAACGATAG

Coding sequence (CDS)

ATGAACAGGTTTATTAAGCATCAAATGTTCACGACCTTTAAAGAGTTCCGGACCGACTGTCATAGACATTTCAAAAAGTACAGCGACCTGGAGGAGGCTCGTGTCAACCCACCAAATGCATTGGTTGGATGTCATGAGGATTGGCACTTCCTCTGCGACCACTATATCAGTCGTGCATTCCAAGAGCAATCACGGACGAACAAGGCTGCTAGACAGAAGCAGCCTTACAATCATAGTAGCGGGTCCAAGTCGTTTCTACAACGATAG

Protein sequence

MNRFIKHQMFTTFKEFRTDCHRHFKKYSDLEEARVNPPNALVGCHEDWHFLCDHYISRAFQEQSRTNKAARQKQPYNHSSGSKSFLQR
BLAST of MELO3C033483.2 vs. NCBI nr
Match: ADN34071.1 (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 160.6 bits (405), Expect = 2.4e-36
Identity = 76/88 (86.36%), Postives = 79/88 (89.77%), Query Frame = 0

Query: 1   MNRFIKHQMFTTFKEFRTDCHRHFKKYSDLEEARVNPPNALVGCHEDWHFLCDHYISRAF 60
           MNRF++HQM TTFKEF+ DCHRHFKKYSD EEAR NPPNALVG  EDWHFL DHYI RAF
Sbjct: 126 MNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDEDWHFLYDHYIRRAF 185

Query: 61  QEQSRTNKAARQKQPYNHSSGSKSFLQR 89
           QEQS TNKAARQKQPYNHSSGSKSFLQR
Sbjct: 186 QEQSWTNKAARQKQPYNHSSGSKSFLQR 213

BLAST of MELO3C033483.2 vs. NCBI nr
Match: XP_016901155.1 (PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 1.6e-16
Identity = 42/61 (68.85%), Postives = 48/61 (78.69%), Query Frame = 0

Query: 1   MNRFIKHQMFTTFKEFRTDCHRHFKKYSDLEEARVNPPNALVGCHEDWHFLCDHYISRAF 60
           MN  +++QM  TFKEF  DCH+ FKKYSD EEAR NPPN LVG +EDWHFL DHY+S AF
Sbjct: 139 MNTSVEYQMSNTFKEFWGDCHKQFKKYSDPEEARANPPNLLVGRNEDWHFLYDHYMSHAF 198

Query: 61  Q 62
           Q
Sbjct: 199 Q 199

BLAST of MELO3C033483.2 vs. NCBI nr
Match: XP_022156286.1 (uncharacterized protein LOC111023212 [Momordica charantia])

HSP 1 Score: 82.4 bits (202), Expect = 8.3e-13
Identity = 39/87 (44.83%), Postives = 60/87 (68.97%), Query Frame = 0

Query: 1   MNRFIKHQMFTTFKEFRTDCHRHFKKYSDLEEARVNPPNALVGCHEDWHFLCDHYISRAF 60
           +N+FI+ QM  +FK++R+D H+++ ++ D  EAR NPP  L    EDW+ LCD + +  +
Sbjct: 30  VNKFIEQQMQISFKQYRSDLHQYYCEFEDPVEARANPPERLTN-PEDWNHLCDRWETPEW 89

Query: 61  QEQSRTNKAARQKQPYNHSSGSKSFLQ 88
           +E ++ NK  R K P+NH +GSKSFLQ
Sbjct: 90  KEITKKNKKNRAKLPFNHRAGSKSFLQ 115

BLAST of MELO3C033483.2 vs. NCBI nr
Match: XP_019078959.1 (PREDICTED: uncharacterized protein LOC104881002 [Vitis vinifera])

HSP 1 Score: 72.8 bits (177), Expect = 6.6e-10
Identity = 33/87 (37.93%), Postives = 53/87 (60.92%), Query Frame = 0

Query: 1   MNRFIKHQMFTTFKEFRTDCHRHFKKYSDLEEARVNPPNALVGCHEDWHFLCDHYISRAF 60
           + + ++ Q+   F+ +R D H+HFKK+  + EA+ NP  + V   EDW +LCD + S  F
Sbjct: 109 VKKSLEKQLSDRFRNWRCDLHKHFKKFPTVVEAKRNPHES-VSNQEDWDYLCDRFSSEEF 168

Query: 61  QEQSRTNKAARQKQPYNHSSGSKSFLQ 88
           + +S  N   R K P++H  GS+SF+Q
Sbjct: 169 KRRSAINSVNRSKMPFHHRGGSRSFIQ 194

BLAST of MELO3C033483.2 vs. NCBI nr
Match: XP_019080375.1 (PREDICTED: uncharacterized protein LOC104881475 [Vitis vinifera])

HSP 1 Score: 72.8 bits (177), Expect = 6.6e-10
Identity = 33/87 (37.93%), Postives = 53/87 (60.92%), Query Frame = 0

Query: 1   MNRFIKHQMFTTFKEFRTDCHRHFKKYSDLEEARVNPPNALVGCHEDWHFLCDHYISRAF 60
           + + ++ Q+   F+ +R D H+HFKK+  + EA+ NP  + V   EDW +LCD + S  F
Sbjct: 96  VKKSLEKQLSDRFRNWRCDLHKHFKKFPTVVEAKRNPHES-VSNQEDWDYLCDRFSSEEF 155

Query: 61  QEQSRTNKAARQKQPYNHSSGSKSFLQ 88
           + +S  N   R K P++H  GS+SF+Q
Sbjct: 156 KRRSAINSVNRSKMPFHHRGGSRSFIQ 181

BLAST of MELO3C033483.2 vs. TrEMBL
Match: tr|E5GC72|E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.6e-36
Identity = 76/88 (86.36%), Postives = 79/88 (89.77%), Query Frame = 0

Query: 1   MNRFIKHQMFTTFKEFRTDCHRHFKKYSDLEEARVNPPNALVGCHEDWHFLCDHYISRAF 60
           MNRF++HQM TTFKEF+ DCHRHFKKYSD EEAR NPPNALVG  EDWHFL DHYI RAF
Sbjct: 126 MNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDEDWHFLYDHYIRRAF 185

Query: 61  QEQSRTNKAARQKQPYNHSSGSKSFLQR 89
           QEQS TNKAARQKQPYNHSSGSKSFLQR
Sbjct: 186 QEQSWTNKAARQKQPYNHSSGSKSFLQR 213

BLAST of MELO3C033483.2 vs. TrEMBL
Match: tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME (LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103493054 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 42/61 (68.85%), Postives = 48/61 (78.69%), Query Frame = 0

Query: 1   MNRFIKHQMFTTFKEFRTDCHRHFKKYSDLEEARVNPPNALVGCHEDWHFLCDHYISRAF 60
           MN  +++QM  TFKEF  DCH+ FKKYSD EEAR NPPN LVG +EDWHFL DHY+S AF
Sbjct: 139 MNTSVEYQMSNTFKEFWGDCHKQFKKYSDPEEARANPPNLLVGRNEDWHFLYDHYMSHAF 198

Query: 61  Q 62
           Q
Sbjct: 199 Q 199

BLAST of MELO3C033483.2 vs. TrEMBL
Match: tr|A0A218X4L7|A0A218X4L7_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr019339 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-09
Identity = 34/80 (42.50%), Postives = 51/80 (63.75%), Query Frame = 0

Query: 9   MFTTFKEFRTDCHRHFKKYSDLEEARVNPPNALVGCHEDWHFLCDHYISRAFQEQSRTNK 68
           M   +++F+ +C +H++K+S +EEAR NPP  +     DW  LC+H+ S  F+  S+ N 
Sbjct: 129 MADRYRQFKHNCRKHYRKFSTIEEARQNPPIDVE--EADWIPLCEHFESDEFKRASKANT 188

Query: 69  AARQKQPYNHSSGSKSFLQR 89
           A R K   NH+SGSKS+ QR
Sbjct: 189 ANRSKLEMNHTSGSKSYCQR 206

BLAST of MELO3C033483.2 vs. TrEMBL
Match: tr|A0A1S4DZ93|A0A1S4DZ93_CUCME (uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.2e-09
Identity = 32/47 (68.09%), Postives = 35/47 (74.47%), Query Frame = 0

Query: 1   MNRFIKHQMFTTFKEFRTDCHRHFKKYSDLEEARVNPPNALVGCHED 48
           +NRF++HQM TTFKEF  DCHRHFK      EAR NPPN LVG HED
Sbjct: 135 INRFVEHQMLTTFKEFWGDCHRHFK------EARANPPNVLVGRHED 175

BLAST of MELO3C033483.2 vs. TrEMBL
Match: tr|A0A2H5Q237|A0A2H5Q237_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_188460 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.0e-08
Identity = 32/82 (39.02%), Postives = 48/82 (58.54%), Query Frame = 0

Query: 4  FIKHQMFTTFKEFRTDCHRHFKKYSDLEEARVNPPNALVGCHEDWHFLCDHYISRAFQEQ 63
          ++ H M   + + R +CH+HFKKY+   EAR +    +    +DW +LC+H+ S  F+E+
Sbjct: 9  YVTHSMVERYLDHRYNCHKHFKKYATPSEARQHAYKNI--SQQDWDWLCNHFESDKFKEK 68

Query: 64 SRTNKAARQKQPYNHSSGSKSF 86
           R N   R+K  YNH  GS SF
Sbjct: 69 VRKNVDNRKKLKYNHRGGSLSF 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ADN34071.12.4e-3686.36CACTA en-spm transposon protein [Cucumis melo subsp. melo][more]
XP_016901155.11.6e-1668.85PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochond... [more]
XP_022156286.18.3e-1344.83uncharacterized protein LOC111023212 [Momordica charantia][more]
XP_019078959.16.6e-1037.93PREDICTED: uncharacterized protein LOC104881002 [Vitis vinifera][more]
XP_019080375.16.6e-1037.93PREDICTED: uncharacterized protein LOC104881475 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|E5GC72|E5GC72_CUCME1.6e-3686.36CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME1.1e-1668.85LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like O... [more]
tr|A0A218X4L7|A0A218X4L7_PUNGR2.2e-0942.50Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr019339 PE=4 SV=1[more]
tr|A0A1S4DZ93|A0A1S4DZ93_CUCME8.2e-0968.09uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=... [more]
tr|A0A2H5Q237|A0A2H5Q237_CITUN7.0e-0839.02Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_188460 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004252Probable_transposase_24
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0008483 transaminase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033483.2.1MELO3C033483.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004252Probable transposase, Ptta/En/Spm, plantPFAMPF03004Transposase_24coord: 47..87
e-value: 4.7E-6
score: 26.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..88
NoneNo IPR availablePANTHERPTHR33499FAMILY NOT NAMEDcoord: 5..87

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C033483.2Watermelon (97103) v1medwmB555
MELO3C033483.2Cucumber (Gy14) v2cgybmedB226
MELO3C033483.2Cucumber (Gy14) v2cgybmedB279
MELO3C033483.2Cucumber (Gy14) v1cgymedB064
MELO3C033483.2Cucumber (Gy14) v1cgymedB288
MELO3C033483.2Cucumber (Gy14) v1cgymedB313
MELO3C033483.2Cucurbita maxima (Rimu)cmamedB283
MELO3C033483.2Cucurbita maxima (Rimu)cmamedB705
MELO3C033483.2Cucurbita maxima (Rimu)cmamedB800
MELO3C033483.2Cucurbita maxima (Rimu)cmamedB803
MELO3C033483.2Cucurbita maxima (Rimu)cmamedB878
MELO3C033483.2Cucurbita maxima (Rimu)cmamedB898
MELO3C033483.2Cucurbita moschata (Rifu)cmomedB269
MELO3C033483.2Cucurbita moschata (Rifu)cmomedB696
MELO3C033483.2Cucurbita moschata (Rifu)cmomedB798
MELO3C033483.2Cucurbita moschata (Rifu)cmomedB799
MELO3C033483.2Cucurbita moschata (Rifu)cmomedB887
MELO3C033483.2Cucurbita pepo (Zucchini)cpemedB082
MELO3C033483.2Cucurbita pepo (Zucchini)cpemedB506
MELO3C033483.2Cucurbita pepo (Zucchini)cpemedB541
MELO3C033483.2Cucurbita pepo (Zucchini)cpemedB703
MELO3C033483.2Wild cucumber (PI 183967)cpimedB251
MELO3C033483.2Wild cucumber (PI 183967)cpimedB313
MELO3C033483.2Wild cucumber (PI 183967)cpimedB406
MELO3C033483.2Cucumber (Chinese Long) v2cumedB249
MELO3C033483.2Cucumber (Chinese Long) v2cumedB310
MELO3C033483.2Cucumber (Chinese Long) v2cumedB398
MELO3C033483.2Melon (DHL92) v3.6.1medmedB033
MELO3C033483.2Melon (DHL92) v3.6.1medmedB140
MELO3C033483.2Bottle gourd (USVL1VR-Ls)lsimedB158
MELO3C033483.2Bottle gourd (USVL1VR-Ls)lsimedB288
MELO3C033483.2Watermelon (Charleston Gray)medwcgB502
MELO3C033483.2Watermelon (Charleston Gray)medwcgB527
MELO3C033483.2Watermelon (Charleston Gray)medwcgB540
MELO3C033483.2Watermelon (97103) v1medwmB540
MELO3C033483.2Watermelon (97103) v1medwmB571
MELO3C033483.2Silver-seed gourdcarmedB0095
MELO3C033483.2Silver-seed gourdcarmedB0567
MELO3C033483.2Silver-seed gourdcarmedB0591
MELO3C033483.2Silver-seed gourdcarmedB0985
MELO3C033483.2Cucumber (Chinese Long) v3cucmedB257
MELO3C033483.2Cucumber (Chinese Long) v3cucmedB320
MELO3C033483.2Cucumber (Chinese Long) v3cucmedB414
MELO3C033483.2Watermelon (97103) v2medwmbB511
MELO3C033483.2Watermelon (97103) v2medwmbB532
MELO3C033483.2Watermelon (97103) v2medwmbB545
MELO3C033483.2Wax gourdmedwgoB644