MELO3C033355.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C033355.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr08 : 21836517 .. 21837599 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGCaGTGGAGAATAGGGCTGGGGGGTTGGTTTGAAAACGGTAGGAAGGAAATGTAATGGAGATTATTGCAGGTTTGTAAGTATAGTTGTATTACAATATTGCAGGGTCTCTTTCTCTCTCAAGAATTACACTTTAGAGTTGAGATTTTAAGGTTTCAGAAACAATTTGGTTACTTGTTTACCCCTAAACATAGATAGATAAGTAAATGACCTCATTTCCTTCTTAATTATTCTGTTTCTTTGACTAGTTGCACTAAACATTCCCTGCTTCTGAAGTATTTGAAATCCGAAAAGAAAACTGTTGCAAACTTAAGTTTGATTGTTCTTACCTTAACACTAAATTTCTTATTTCCTTCTCTATTAGTCACATGTTGTCTCCAAGAAAGAGGTGCTAACTATTGGCAAAGCAAGGAGACAGATTATATGGAGTGAGAACTCATCAGAACCCAGTGAAATAGTGGATGATGAAGCTATGTTTCCAAGTGCTACAAGTGTTGGAGAAATTGTGCCGTTTCAAAAACCTGATTCAAGCCTTGGTATTGTTCTGAACATGCAGCTTTAGTGTGACATACTTAATTTGACAAACACCCCATTCTTTCCTATCTCCATCACTTATCTCTGAGTTAAGTAGAGGTTTGTTTAGAGTGGAAGTTCATGCTTTTTAAACAATCTAGCTAAAGATTTCAGTTTCTGTTGTAGAAGAGGGGTTTTTCTTCCTTTTcTTAATTTTTCTAAAAAAATTGAAATGAAAATGTTGAATGCTTCTGCCAAATGAAGATTATTATCTAATGTGAATTTTTAAATTACCGCAGAGGAGATAAGTGCTAAGAAAGAAAGAGAAATAAAAAAAGACCTGACCCGACCCGAATGTGGGTCGGGTCGGATTTCAGAATTAACCGTACATTTTAGGTCGAGTCGGTTTTGAAGAAAACCCGATCCGTCCCGACCCAATTACACCCCTAGTTTGTATATCAACCAAGAATACAATAAGGAGTTGTGTACAGGATGGTCTTCTCAAAGGAAGAGCGTATTTAATTAAGCTTACCACTATCTCGACCCGGGAACCTGTTGGGAGTTGA

mRNA sequence

ATGATAGCaGTGGAGAATAGGGCTGGGGGGTTGGGTCTCTTTCTCTCTCAAGAATTACACTTTAGAGTTGAGATTTTAAGTTGCACTAAACATTCCCTGCTTCTGAAGTATTTGAAATCCGAAAAGAAAACTGTTGCAAACTTAAGTTTGATTTCACATGTTGTCTCCAAGAAAGAGGTGCTAACTATTGGCAAAGCAAGGAGACAGATTATATGGAGTGAGAACTCATCAGAACCCAGTGAAATAGTGGATGATGAAGCTATGTTTCCAAGTGCTACAAGTGTTGGAGAAATTGTGCCGTTTCAAAAACCTGATTCAAGCCTTGGTCGAGTCGGTTTTGAAGAAAACCCGATCCGTCCCGACCCAATTACACCCCTAGTTTGTATATCAACCAAGAATACAATAAGGAGTTGTGTACAGGATGGTCTTCTCAAAGGAAGAGCGTATTTAATTAAGCTTACCACTATCTCGACCCGGGAACCTGTTGGGAGTTGA

Coding sequence (CDS)

ATGATAGCaGTGGAGAATAGGGCTGGGGGGTTGGGTCTCTTTCTCTCTCAAGAATTACACTTTAGAGTTGAGATTTTAAGTTGCACTAAACATTCCCTGCTTCTGAAGTATTTGAAATCCGAAAAGAAAACTGTTGCAAACTTAAGTTTGATTTCACATGTTGTCTCCAAGAAAGAGGTGCTAACTATTGGCAAAGCAAGGAGACAGATTATATGGAGTGAGAACTCATCAGAACCCAGTGAAATAGTGGATGATGAAGCTATGTTTCCAAGTGCTACAAGTGTTGGAGAAATTGTGCCGTTTCAAAAACCTGATTCAAGCCTTGGTCGAGTCGGTTTTGAAGAAAACCCGATCCGTCCCGACCCAATTACACCCCTAGTTTGTATATCAACCAAGAATACAATAAGGAGTTGTGTACAGGATGGTCTTCTCAAAGGAAGAGCGTATTTAATTAAGCTTACCACTATCTCGACCCGGGAACCTGTTGGGAGTTGA

Protein sequence

MIAVENRAGGLGLFLSQELHFRVEILSCTKHSLLLKYLKSEKKTVANLSLISHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLGRVGFEENPIRPDPITPLVCISTKNTIRSCVQDGLLKGRAYLIKLTTISTREPVGS

Homology

[Close]

BLAST of MELO3C033355.2 vs. NCBI nr
Match: XP_004140849.1 (PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X4 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 2.8e-14
Identity = 53/88 (60.23%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 52  SHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLGRV 111
           S VVSKKEVLTIGKARRQIIWSEN+SEPSE+VD EAMFP+A SVGE V F  PD SLG +
Sbjct: 78  SPVVSKKEVLTIGKARRQIIWSENTSEPSEMVDGEAMFPNA-SVGETVLFPIPDPSLGGI 137

Query: 112 GFEENPIRPDPITPLVCISTKNTIRSCV 140
             + +   P     L     KN I   V
Sbjct: 138 SAKPHCSTPTDAKGLKQSDGKNDISEIV 164

[Close]

BLAST of MELO3C033355.2 vs. NCBI nr
Match: XP_011651144.1 (PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X2 [Cucumis sativus] >KGN57363.1 hypothetical protein Csa_3G181990 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 2.8e-14
Identity = 53/88 (60.23%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 52  SHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLGRV 111
           S VVSKKEVLTIGKARRQIIWSEN+SEPSE+VD EAMFP+A SVGE V F  PD SLG +
Sbjct: 117 SPVVSKKEVLTIGKARRQIIWSENTSEPSEMVDGEAMFPNA-SVGETVLFPIPDPSLGGI 176

Query: 112 GFEENPIRPDPITPLVCISTKNTIRSCV 140
             + +   P     L     KN I   V
Sbjct: 177 SAKPHCSTPTDAKGLKQSDGKNDISEIV 203

[Close]

BLAST of MELO3C033355.2 vs. NCBI nr
Match: XP_011651143.1 (PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 2.8e-14
Identity = 53/88 (60.23%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 52  SHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLGRV 111
           S VVSKKEVLTIGKARRQIIWSEN+SEPSE+VD EAMFP+A SVGE V F  PD SLG +
Sbjct: 153 SPVVSKKEVLTIGKARRQIIWSENTSEPSEMVDGEAMFPNA-SVGETVLFPIPDPSLGGI 212

Query: 112 GFEENPIRPDPITPLVCISTKNTIRSCV 140
             + +   P     L     KN I   V
Sbjct: 213 SAKPHCSTPTDAKGLKQSDGKNDISEIV 239

[Close]

BLAST of MELO3C033355.2 vs. NCBI nr
Match: XP_011651145.1 (PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X3 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 2.8e-14
Identity = 53/88 (60.23%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 52  SHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLGRV 111
           S VVSKKEVLTIGKARRQIIWSEN+SEPSE+VD EAMFP+A SVGE V F  PD SLG +
Sbjct: 110 SPVVSKKEVLTIGKARRQIIWSENTSEPSEMVDGEAMFPNA-SVGETVLFPIPDPSLGGI 169

Query: 112 GFEENPIRPDPITPLVCISTKNTIRSCV 140
             + +   P     L     KN I   V
Sbjct: 170 SAKPHCSTPTDAKGLKQSDGKNDISEIV 196

[Close]

BLAST of MELO3C033355.2 vs. NCBI nr
Match: XP_022984607.1 (methyl-CpG-binding domain-containing protein 13-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 86.7 bits (213), Expect = 8.2e-14
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 52  SHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLGRV 111
           S  VSKKE+L IGKA+RQIIWS+NS EPSEI DDEA+FP A SVGE +PF KP+ + GR+
Sbjct: 155 SSSVSKKEMLAIGKAKRQIIWSDNSPEPSEIADDEAIFPKAASVGERMPFLKPNLTHGRI 214

Query: 112 G 113
           G
Sbjct: 215 G 215

[Close]

BLAST of MELO3C033355.2 vs. TrEMBL
Match: tr|A0A0A0L6H4|A0A0A0L6H4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G181990 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.9e-14
Identity = 53/88 (60.23%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 52  SHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLGRV 111
           S VVSKKEVLTIGKARRQIIWSEN+SEPSE+VD EAMFP+A SVGE V F  PD SLG +
Sbjct: 117 SPVVSKKEVLTIGKARRQIIWSENTSEPSEMVDGEAMFPNA-SVGETVLFPIPDPSLGGI 176

Query: 112 GFEENPIRPDPITPLVCISTKNTIRSCV 140
             + +   P     L     KN I   V
Sbjct: 177 SAKPHCSTPTDAKGLKQSDGKNDISEIV 203

The following BLAST results are available for this feature:

BLAST of MELO3C033355.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140849.1	2.8e-14	60.23	PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X4 [Cucumis s...	[more]
XP_011651144.1	2.8e-14	60.23	PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X2 [Cucumis s...	[more]
XP_011651143.1	2.8e-14	60.23	PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucumis s...	[more]
XP_011651145.1	2.8e-14	60.23	PREDICTED: methyl-CpG-binding domain-containing protein 13 isoform X3 [Cucumis s...	[more]
XP_022984607.1	8.2e-14	68.85	methyl-CpG-binding domain-containing protein 13-like isoform X1 [Cucurbita maxim...	[more]

BLAST of MELO3C033355.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C033355.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C033355.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L6H4\|A0A0A0L6H4_CUCSA	1.9e-14	60.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G181990 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033355.2.1	MELO3C033355.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C033355.2	Cucumber (Gy14) v2	cgybmedB285
MELO3C033355.2	Cucumber (Gy14) v1	cgymedB577
MELO3C033355.2	Cucurbita maxima (Rimu)	cmamedB698
MELO3C033355.2	Cucurbita maxima (Rimu)	cmamedB909
MELO3C033355.2	Cucurbita moschata (Rifu)	cmomedB689
MELO3C033355.2	Cucurbita moschata (Rifu)	cmomedB897
MELO3C033355.2	Cucurbita pepo (Zucchini)	cpemedB095
MELO3C033355.2	Cucurbita pepo (Zucchini)	cpemedB533
MELO3C033355.2	Wild cucumber (PI 183967)	cpimedB324
MELO3C033355.2	Cucumber (Chinese Long) v2	cumedB312
MELO3C033355.2	Cucumber (Chinese Long) v2	cumedB321
MELO3C033355.2	Bottle gourd (USVL1VR-Ls)	lsimedB159
MELO3C033355.2	Watermelon (Charleston Gray)	medwcgB522
MELO3C033355.2	Watermelon (97103) v1	medwmB565
MELO3C033355.2	Silver-seed gourd	carmedB0298
MELO3C033355.2	Silver-seed gourd	carmedB0858
MELO3C033355.2	Cucumber (Chinese Long) v3	cucmedB329
MELO3C033355.2	Watermelon (97103) v2	medwmbB526
MELO3C033355.2	Wax gourd	medwgoB650
MELO3C033355.2	Wax gourd	medwgoB670