MELO3C033321.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C033321.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionS locus-related glycoprotein 1 binding pollen coat
Locationchr08 : 19341596 .. 19344409 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTTAACAAAACAATAGTTTCAAAATTTGCATATCTTAAGAATATGGCTTCTTCCCGTATCATCTTCTTTGCTCTTATATTTGCAGGTTCGTTTCCTTTAATTTCTTCCATAAACACAATATTATCATGTGTTACGAAATCAAAAAACCAGGAGACATATTAGATTGCTAATTCGTATAGTTATGAGTTTTTTTAGTTAGTTATGTTTTTGTATAGTTGCATTGATCTTAGTGCCTCAAGATGCCTCAGCTTCCAAAAGATGTCAAGACGTTTTGTATAACACTGGGTGCTCTCTCAATGATTGTGGGAAGAAATGTTGGGAGAAGCATCATACCATCTCACATCAATGCATTCCAACTAATCCTTCTCAAACCATATATGCATGTTATTGTTTCTTTGATTGTAGTGATCAAAAGAATTGATCTGTATGCTAACATCTCCCAATTTTATGTAATGTACTTTGTCACCTAAACTTATAAATAATAACACATATCTTCCCTAATCTTTGACTGTGCTTCAACAATTTAATGTCTTGAACACAAGATTCCATAAACTAAAATTCTTTCAACATTATTGTCATGGATTAGCTTTCTTATGAACAACTTCAAAACTTACGACTTTGTATCAACCCTAATATTGGAATTCCAAATTAATTAGGAAATCCCACCAACTATAAATTAGACAAATAGAGTCACTCAATGTATTAAAATCATCTAAAATTATTATCTATAACCTAAATACTTTGTTTATGCATATTCCAATTGCTAGGAACTGTGATTAATTATCATAAGTATCATGTTAGCTACAATCATAAGTCAAACCCACAATAGACCTATACTAAGTTCTTAGGTGATGCCAGGATGAGCACTTAGCTTCCATCCTCAAATCAAGTCTCACCTTTTGCTTTTAAAGGAAACATTTGCTAATCTTCTCTTTCTTTGGAATTTGTCGTTTTATTTTTAGGTAGCGGTTTTTTTTTTTTGGTAGTTAGTTATGGGCTCTTCCTATTCTAGGATTCAGCTAGTAAACTTGATAGGAAGGCTGGCCTTTCGAGGAGTTAGTTTAAGTTAGTTCAACAAATGAATTTAAGCATGAGTACTCTTTTCTAAAGGATCATAGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGCTCTTCCTATTCTAGGATTCAGCTAGTAAACTTGATAGGAAGGCTGGCCTTTCGAGGAGTTAGTTTAAGTTAGTTCAACAAATGAATTTAAGCATGAGTACTCTTTTCTAAAGGATCATAGGTTTATTGTGACACTTAGCAAAGAATTAAAAAATGAATGAGATAATAAGAGAAAAAGTTTTAAAAATGACATGAAAACTGTGAATGCTTCTATTCTTAATTAAAATCAAGCAAGATAAGCTAGCATGAGTATGTCATCGACTATATGTGATATAGTCATCGGTTGTAGAGTTTTATGTTTAAATGTGATTTAAATATTAAAAATATGAATACATATTCGTTGTAATACATTAGCTAAAGCAACATTGTCATCTTAATAGACTACCTATAATACTTCCGTACAAGCCTTCATCCACCATTTTACCCAAATCATCCTTCAAAACCTTGAAATGAGTTGCAATAGAAGTTCTCTTGGCCTTGGCAAGATCAAGAGCAAATTTATTTATTAAAATTTTAAGCATATTTTTCTTGAGAAAGAAAAATTTCAGATTCACATAAATGAATTTGAAATCCAAGAAATAAGATTAACTTTCCTACCATACTCATTTCAAACTCTATCTTTACTATCTCGACGAATGTTAATATCATAGAATATGGTTGCCCTATAAAGATAATGTCATCCATGTATATTTGTGCAACTAAAAACTCAAGATAATATTTCTTGATAAACATTATTTTATCAGTGCCTCTTCGAGTAAAACCTTGTTTTACAAGAAATACTAACAATCTTTTATACCAAGCCCAAGGGGCTACTTGAGACCATATAATGCCTTGTGTAATTTATAAACATGATTTGGATTGACAGGATCTTCAAATCCTTTCGGTTGA

mRNA sequence

ACTTAACAAAACAATAGTTTCAAAATTTGCATATCTTAAGAATATGGCTTCTTCCCGTATCATCTTCTTTGCTCTTATATTTGCAGTTGCATTGATCTTAGTGCCTCAAGATGCCTCAGCTTCCAAAAGATGTCAAGACGTTTTGTATAACACTGGGTGCTCTCTCAATGATTGTGGGAAGAAATGTTGGGAGAAGCATCATACCATCTCACATCAATGCATTCCAACTAATCCTTCTCAAACCATATATGCATGTAGCGTTATGGGCTCTTCCTATTCTAGGATTCAGCTAGTAAACTTGATAGGAAGGCTGGCCTTTCGAGGAGTTAGTTTAAGATCTTCAAATCCTTTCGGTTGA

Coding sequence (CDS)

ATGGCTTCTTCCCGTATCATCTTCTTTGCTCTTATATTTGCAGTTGCATTGATCTTAGTGCCTCAAGATGCCTCAGCTTCCAAAAGATGTCAAGACGTTTTGTATAACACTGGGTGCTCTCTCAATGATTGTGGGAAGAAATGTTGGGAGAAGCATCATACCATCTCACATCAATGCATTCCAACTAATCCTTCTCAAACCATATATGCATGTAGCGTTATGGGCTCTTCCTATTCTAGGATTCAGCTAGTAAACTTGATAGGAAGGCTGGCCTTTCGAGGAGTTAGTTTAAGATCTTCAAATCCTTTCGGTTGA

Protein sequence

MASSRIIFFALIFAVALILVPQDASASKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPTNPSQTIYACSVMGSSYSRIQLVNLIGRLAFRGVSLRSSNPFG
Homology
[Close]
BLAST of MELO3C033321.2 vs. NCBI nr
Match: KGN54897.1 (hypothetical protein Csa_4G576870 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 1.7e-28
Identity = 61/71 (85.92%), Postives = 66/71 (92.96%), Query Frame = 0 

Query: 1  MASSRIIFFALIFAVALILVPQDASASKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCI 60
          M SSRII FALIFAVAL+L  QD SA++RCQDVLYNTGC+LNDCGKKCWEKHHT+SHQCI
Sbjct: 1  MDSSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCI 60

Query: 61 PTNPSQTIYAC 72
          PTNPSQTIYAC
Sbjct: 61 PTNPSQTIYAC 71

[Close]
BLAST of MELO3C033321.2 vs. NCBI nr
Match: KGN64987.1 (hypothetical protein Csa_1G172580 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 4.6e-18
Identity = 46/69 (66.67%), Postives = 55/69 (79.71%), Query Frame = 0 

Query: 3  SSRIIFFALIFAVALILVPQDASASKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPT 62
          SS I+   LI AVA+I +PQ A A+ RCQD+LYN+GC+L DCG+KCWEKHH  S QCIPT
Sbjct: 6  SSWILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPT 65

Query: 63 NPSQTIYAC 72
          +P QTIYAC
Sbjct: 66 DPDQTIYAC 73

[Close]
BLAST of MELO3C033321.2 vs. NCBI nr
Match: KGN54810.1 (hypothetical protein Csa_4G507400 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 6.6e-09
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 0 

Query: 1  MASSRIIFFALIFAVALILVPQDASASKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCI 60
          ++S R+    +IFAV++ILVPQ  SA K CQD LY  GC  ++CG+KC + HH  + +CI
Sbjct: 21 LSSFRVAIIIVIFAVSMILVPQGTSALK-CQDRLYVGGCIQHECGQKCSQLHHGGTSKCI 80

Query: 61 PTNPSQTIYAC 72
           T+P+ T YAC
Sbjct: 81 STDPTFTKYAC 90

[Close]
BLAST of MELO3C033321.2 vs. NCBI nr
Match: OMO95288.1 (S locus-related glycoprotein 1 binding pollen coat [Corchorus olitorius])

HSP 1 Score: 69.7 bits (169), Expect = 6.6e-09
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 20 VPQDASASKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPTNPSQTIYAC 72
          V   A A KRCQ +LY  GC+L DC KKC++K  +I  QCIPTN +QTIY C
Sbjct: 26 VAAQADAQKRCQKILYPKGCTLMDCRKKCFQKFGSIGGQCIPTNQAQTIYEC 77

[Close]
BLAST of MELO3C033321.2 vs. NCBI nr
Match: OMO53797.1 (S locus-related glycoprotein 1 binding pollen coat [Corchorus capsularis])

HSP 1 Score: 64.7 bits (156), Expect = 2.1e-07
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 28 KRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPTNPSQTIYAC 72
          KRCQ +LY  GC+L DC KKC++K  ++  QCIPTN +QTIY C
Sbjct: 33 KRCQKILYPRGCTLMDCRKKCFQKFGSVGGQCIPTNQAQTIYEC 76

[Close]
BLAST of MELO3C033321.2 vs. TrEMBL
Match: tr|A0A0A0L2R3|A0A0A0L2R3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.1e-28
Identity = 61/71 (85.92%), Postives = 66/71 (92.96%), Query Frame = 0 

Query: 1  MASSRIIFFALIFAVALILVPQDASASKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCI 60
          M SSRII FALIFAVAL+L  QD SA++RCQDVLYNTGC+LNDCGKKCWEKHHT+SHQCI
Sbjct: 1  MDSSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCI 60

Query: 61 PTNPSQTIYAC 72
          PTNPSQTIYAC
Sbjct: 61 PTNPSQTIYAC 71

[Close]
BLAST of MELO3C033321.2 vs. TrEMBL
Match: tr|A0A0A0LVZ5|A0A0A0LVZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.0e-18
Identity = 46/69 (66.67%), Postives = 55/69 (79.71%), Query Frame = 0 

Query: 3  SSRIIFFALIFAVALILVPQDASASKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPT 62
          SS I+   LI AVA+I +PQ A A+ RCQD+LYN+GC+L DCG+KCWEKHH  S QCIPT
Sbjct: 6  SSWILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPT 65

Query: 63 NPSQTIYAC 72
          +P QTIYAC
Sbjct: 66 DPDQTIYAC 73

[Close]
BLAST of MELO3C033321.2 vs. TrEMBL
Match: tr|A0A1R3JKF5|A0A1R3JKF5_9ROSI (S locus-related glycoprotein 1 binding pollen coat OS=Corchorus olitorius OX=93759 GN=COLO4_16008 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.4e-09
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 20 VPQDASASKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPTNPSQTIYAC 72
          V   A A KRCQ +LY  GC+L DC KKC++K  +I  QCIPTN +QTIY C
Sbjct: 26 VAAQADAQKRCQKILYPKGCTLMDCRKKCFQKFGSIGGQCIPTNQAQTIYEC 77

[Close]
BLAST of MELO3C033321.2 vs. TrEMBL
Match: tr|A0A0A0KYP7|A0A0A0KYP7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.4e-09
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 0 

Query: 1  MASSRIIFFALIFAVALILVPQDASASKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCI 60
          ++S R+    +IFAV++ILVPQ  SA K CQD LY  GC  ++CG+KC + HH  + +CI
Sbjct: 21 LSSFRVAIIIVIFAVSMILVPQGTSALK-CQDRLYVGGCIQHECGQKCSQLHHGGTSKCI 80

Query: 61 PTNPSQTIYAC 72
           T+P+ T YAC
Sbjct: 81 STDPTFTKYAC 90

[Close]
BLAST of MELO3C033321.2 vs. TrEMBL
Match: tr|A0A1R3G6W7|A0A1R3G6W7_COCAP (S locus-related glycoprotein 1 binding pollen coat OS=Corchorus capsularis OX=210143 GN=CCACVL1_28320 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-07
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 28 KRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPTNPSQTIYAC 72
          KRCQ +LY  GC+L DC KKC++K  ++  QCIPTN +QTIY C
Sbjct: 33 KRCQKILYPRGCTLMDCRKKCFQKFGSVGGQCIPTNQAQTIYEC 76

The following BLAST results are available for this feature:
BLAST of MELO3C033321.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54897.11.7e-2885.92hypothetical protein Csa_4G576870 [Cucumis sativus][more]
KGN64987.14.6e-1866.67hypothetical protein Csa_1G172580 [Cucumis sativus][more]
KGN54810.16.6e-0949.30hypothetical protein Csa_4G507400 [Cucumis sativus][more]
OMO95288.16.6e-0957.69S locus-related glycoprotein 1 binding pollen coat [Corchorus olitorius][more]
OMO53797.12.1e-0759.09S locus-related glycoprotein 1 binding pollen coat [Corchorus capsularis][more]
BLAST of MELO3C033321.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C033321.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C033321.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L2R3|A0A0A0L2R3_CUCSA1.1e-2885.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=4 SV=1[more]
tr|A0A0A0LVZ5|A0A0A0LVZ5_CUCSA3.0e-1866.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=4 SV=1[more]
tr|A0A1R3JKF5|A0A1R3JKF5_9ROSI4.4e-0957.69S locus-related glycoprotein 1 binding pollen coat OS=Corchorus olitorius OX=937... [more]
tr|A0A0A0KYP7|A0A0A0KYP7_CUCSA4.4e-0949.30Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=4 SV=1[more]
tr|A0A1R3G6W7|A0A1R3G6W7_COCAP1.4e-0759.09S locus-related glycoprotein 1 binding pollen coat OS=Corchorus capsularis OX=21... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033321.2.1MELO3C033321.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C033321.2Watermelon (97103) v2medwmbB529
MELO3C033321.2Wax gourdmedwgoB653
MELO3C033321.2Cucurbita maxima (Rimu)cmamedB908
MELO3C033321.2Cucurbita moschata (Rifu)cmomedB691
MELO3C033321.2Cucurbita moschata (Rifu)cmomedB898
MELO3C033321.2Cucurbita pepo (Zucchini)cpemedB094
MELO3C033321.2Cucurbita pepo (Zucchini)cpemedB534
MELO3C033321.2Cucumber (Chinese Long) v2cumedB326
MELO3C033321.2Bottle gourd (USVL1VR-Ls)lsimedB161
MELO3C033321.2Watermelon (Charleston Gray)medwcgB525
MELO3C033321.2Watermelon (97103) v1medwmB578
MELO3C033321.2Silver-seed gourdcarmedB0199
MELO3C033321.2Silver-seed gourdcarmedB0299