MELO3C033318.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C033318.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	S locus-related glycoprotein 1 binding pollen coat
Location	chr08 : 19226702 .. 19227179 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACAATAGTTTCAAAATTTGGATATCTTAAGATTATGGCTTCTTCCCGTATCATATGCTTTGCTCTTATATTTGCAGGTTCGTTTCCTTTAATTTCTTCCACAAATACAATATTATCATGTGTTACAAAATCAAAAAACCATGAGACATATTAGATTGCTAGTTTGTATAGTTATGTTTTTATGTTTTTGTATAGTTGCATTGATCTTAGTGCCTCAAGATGTCTCAGCTGCCAAAAGATGTCAAGACGTTTTGTATAACACTGGGTGCTCTCTCAATGATTGTGGGAAGCAATGTTGGAAGAAGCATCATACTATTTCACATCAATGCATTCCAACTAATCCTTCTCAAACCATATATGCGTGTTATTGTTTCTTTGATTGTGGTGATCAAAAGAATTGATCTGCATGCTGACATCTCCCAATTTTATGTAATGTACTTTGTCACTTAAACTTATAAATAATATCAAACATCTTCC

mRNA sequence

AAACAATAGTTTCAAAATTTGGATATCTTAAGATTATGGCTTCTTCCCGTATCATATGCTTTGCTCTTATATTTGCAGTTGCATTGATCTTAGTGCCTCAAGATGTCTCAGCTGCCAAAAGATGTCAAGACGTTTTGTATAACACTGGGTGCTCTCTCAATGATTGTGGGAAGCAATGTTGGAAGAAGCATCATACTATTTCACATCAATGCATTCCAACTAATCCTTCTCAAACCATATATGCGTGTTATTGTTTCTTTGATTGTGGTGATCAAAAGAATTGATCTGCATGCTGACATCTCCCAATTTTATGTAATGTACTTTGTCACTTAAACTTATAAATAATATCAAACATCTTCC

Coding sequence (CDS)

ATGGCTTCTTCCCGTATCATATGCTTTGCTCTTATATTTGCAGTTGCATTGATCTTAGTGCCTCAAGATGTCTCAGCTGCCAAAAGATGTCAAGACGTTTTGTATAACACTGGGTGCTCTCTCAATGATTGTGGGAAGCAATGTTGGAAGAAGCATCATACTATTTCACATCAATGCATTCCAACTAATCCTTCTCAAACCATATATGCGTGTTATTGTTTCTTTGATTGTGGTGATCAAAAGAATTGA

Protein sequence

MASSRIICFALIFAVALILVPQDVSAAKRCQDVLYNTGCSLNDCGKQCWKKHHTISHQCIPTNPSQTIYACYCFFDCGDQKN

Homology

[Close]

BLAST of MELO3C033318.2 vs. NCBI nr
Match: KGN54897.1 (hypothetical protein Csa_4G576870 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 3.5e-37
Identity = 72/82 (87.80%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MASSRIICFALIFAVALILVPQDVSAAKRCQDVLYNTGCSLNDCGKQCWKKHHTISHQCI 60
          M SSRIICFALIFAVAL+L  QDVSAA+RCQDVLYNTGC+LNDCGK+CW+KHHT+SHQCI
Sbjct: 1  MDSSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCI 60

Query: 61 PTNPSQTIYACYCFFDCGDQKN 83
          PTNPSQTIYACYCFFDCG QKN
Sbjct: 61 PTNPSQTIYACYCFFDCGGQKN 82

[Close]

BLAST of MELO3C033318.2 vs. NCBI nr
Match: KGN64987.1 (hypothetical protein Csa_1G172580 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-21
Identity = 49/76 (64.47%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 3  SSRIICFALIFAVALILVPQDVSAAKRCQDVLYNTGCSLNDCGKQCWKKHHTISHQCIPT 62
          SS I+   LI AVA+I +PQ   AA RCQD+LYN+GC+L DCG++CW+KHH  S QCIPT
Sbjct: 6  SSWILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPT 65

Query: 63 NPSQTIYACYCFFDCG 79
          +P QTIYACYCF+ CG
Sbjct: 66 DPDQTIYACYCFYTCG 80

[Close]

BLAST of MELO3C033318.2 vs. NCBI nr
Match: KGN54810.1 (hypothetical protein Csa_4G507400 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 2.3e-12
Identity = 38/77 (49.35%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 1  MASSRIICFALIFAVALILVPQDVSAAKRCQDVLYNTGCSLNDCGKQCWKKHHTISHQCI 60
          ++S R+    +IFAV++ILVPQ  SA K CQD LY  GC  ++CG++C + HH  + +CI
Sbjct: 21 LSSFRVAIIIVIFAVSMILVPQGTSALK-CQDRLYVGGCIQHECGQKCSQLHHGGTSKCI 80

Query: 61 PTNPSQTIYACYCFFDC 78
           T+P+ T YACYCF++C
Sbjct: 81 STDPTFTKYACYCFYNC 96

[Close]

BLAST of MELO3C033318.2 vs. NCBI nr
Match: OMO95288.1 (S locus-related glycoprotein 1 binding pollen coat [Corchorus olitorius])

HSP 1 Score: 73.2 bits (178), Expect = 4.7e-10
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 20 VPQDVSAAKRCQDVLYNTGCSLNDCGKQCWKKHHTISHQCIPTNPSQTIYACYCFFDC 78
          V     A KRCQ +LY  GC+L DC K+C++K  +I  QCIPTN +QTIY C C ++C
Sbjct: 26 VAAQADAQKRCQKILYPKGCTLMDCRKKCFQKFGSIGGQCIPTNQAQTIYECLCVYNC 83

[Close]

BLAST of MELO3C033318.2 vs. NCBI nr
Match: XP_018498384.1 (PREDICTED: putative defensin-like protein 165 [Pyrus x bretschneideri])

HSP 1 Score: 71.2 bits (173), Expect = 1.8e-09
Identity = 35/72 (48.61%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 7  ICFALIFAVALILVP-QDVSAAKRCQDVLYNTGCSLNDCGKQCWKKHHTISHQCIPTNPS 66
          I   LIF+VAL     +   A KRCQ++LY + C+L DCG++C+ KHH   H CI  NP+
Sbjct: 10 ILLVLIFSVALKCGNLRQTYAQKRCQELLYPSNCTLLDCGEKCFNKHHDQGHTCI-ANPA 69

Query: 67 QTIYACYCFFDC 78
           T YACYC ++C
Sbjct: 70 GTDYACYCIYNC 80

[Close]

BLAST of MELO3C033318.2 vs. TrEMBL
Match: tr|A0A0A0L2R3|A0A0A0L2R3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.3e-37
Identity = 72/82 (87.80%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MASSRIICFALIFAVALILVPQDVSAAKRCQDVLYNTGCSLNDCGKQCWKKHHTISHQCI 60
          M SSRIICFALIFAVAL+L  QDVSAA+RCQDVLYNTGC+LNDCGK+CW+KHHT+SHQCI
Sbjct: 1  MDSSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCI 60

Query: 61 PTNPSQTIYACYCFFDCGDQKN 83
          PTNPSQTIYACYCFFDCG QKN
Sbjct: 61 PTNPSQTIYACYCFFDCGGQKN 82

[Close]

BLAST of MELO3C033318.2 vs. TrEMBL
Match: tr|A0A0A0LVZ5|A0A0A0LVZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.9e-22
Identity = 49/76 (64.47%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 3  SSRIICFALIFAVALILVPQDVSAAKRCQDVLYNTGCSLNDCGKQCWKKHHTISHQCIPT 62
          SS I+   LI AVA+I +PQ   AA RCQD+LYN+GC+L DCG++CW+KHH  S QCIPT
Sbjct: 6  SSWILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPT 65

Query: 63 NPSQTIYACYCFFDCG 79
          +P QTIYACYCF+ CG
Sbjct: 66 DPDQTIYACYCFYTCG 80

[Close]

BLAST of MELO3C033318.2 vs. TrEMBL
Match: tr|A0A0A0KYP7|A0A0A0KYP7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-12
Identity = 38/77 (49.35%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 1  MASSRIICFALIFAVALILVPQDVSAAKRCQDVLYNTGCSLNDCGKQCWKKHHTISHQCI 60
          ++S R+    +IFAV++ILVPQ  SA K CQD LY  GC  ++CG++C + HH  + +CI
Sbjct: 21 LSSFRVAIIIVIFAVSMILVPQGTSALK-CQDRLYVGGCIQHECGQKCSQLHHGGTSKCI 80

Query: 61 PTNPSQTIYACYCFFDC 78
           T+P+ T YACYCF++C
Sbjct: 81 STDPTFTKYACYCFYNC 96

[Close]

BLAST of MELO3C033318.2 vs. TrEMBL
Match: tr|A0A1R3JKF5|A0A1R3JKF5_9ROSI (S locus-related glycoprotein 1 binding pollen coat OS=Corchorus olitorius OX=93759 GN=COLO4_16008 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.1e-10
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 20 VPQDVSAAKRCQDVLYNTGCSLNDCGKQCWKKHHTISHQCIPTNPSQTIYACYCFFDC 78
          V     A KRCQ +LY  GC+L DC K+C++K  +I  QCIPTN +QTIY C C ++C
Sbjct: 26 VAAQADAQKRCQKILYPKGCTLMDCRKKCFQKFGSIGGQCIPTNQAQTIYECLCVYNC 83

[Close]

BLAST of MELO3C033318.2 vs. TrEMBL
Match: tr|A0A1R3G6W7|A0A1R3G6W7_COCAP (S locus-related glycoprotein 1 binding pollen coat OS=Corchorus capsularis OX=210143 GN=CCACVL1_28320 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-09
Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 28 KRCQDVLYNTGCSLNDCGKQCWKKHHTISHQCIPTNPSQTIYACYCFFDC 78
          KRCQ +LY  GC+L DC K+C++K  ++  QCIPTN +QTIY C C ++C
Sbjct: 33 KRCQKILYPRGCTLMDCRKKCFQKFGSVGGQCIPTNQAQTIYECLCVYNC 82

The following BLAST results are available for this feature:

BLAST of MELO3C033318.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54897.1	3.5e-37	87.80	hypothetical protein Csa_4G576870 [Cucumis sativus]	[more]
KGN64987.1	1.2e-21	64.47	hypothetical protein Csa_1G172580 [Cucumis sativus]	[more]
KGN54810.1	2.3e-12	49.35	hypothetical protein Csa_4G507400 [Cucumis sativus]	[more]
OMO95288.1	4.7e-10	51.72	S locus-related glycoprotein 1 binding pollen coat [Corchorus olitorius]	[more]
XP_018498384.1	1.8e-09	48.61	PREDICTED: putative defensin-like protein 165 [Pyrus x bretschneideri]	[more]

BLAST of MELO3C033318.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C033318.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C033318.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L2R3\|A0A0A0L2R3_CUCSA	2.3e-37	87.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=4 SV=1	[more]
tr\|A0A0A0LVZ5\|A0A0A0LVZ5_CUCSA	7.9e-22	64.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=4 SV=1	[more]
tr\|A0A0A0KYP7\|A0A0A0KYP7_CUCSA	1.5e-12	49.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=4 SV=1	[more]
tr\|A0A1R3JKF5\|A0A1R3JKF5_9ROSI	3.1e-10	51.72	S locus-related glycoprotein 1 binding pollen coat OS=Corchorus olitorius OX=937...	[more]
tr\|A0A1R3G6W7\|A0A1R3G6W7_COCAP	2.0e-09	54.00	S locus-related glycoprotein 1 binding pollen coat OS=Corchorus capsularis OX=21...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010851	SLR1_pollen-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033318.2.1	MELO3C033318.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010851	S locus-related glycoprotein 1 binding pollen coat protein	PFAM	PF07333	SLR1-BP	coord: 26..77 e-value: 1.7E-6 score: 28.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C033318.2	Cucurbita maxima (Rimu)	cmamedB908
MELO3C033318.2	Cucurbita moschata (Rifu)	cmomedB691
MELO3C033318.2	Cucurbita moschata (Rifu)	cmomedB898
MELO3C033318.2	Cucurbita pepo (Zucchini)	cpemedB094
MELO3C033318.2	Cucurbita pepo (Zucchini)	cpemedB534
MELO3C033318.2	Cucumber (Chinese Long) v2	cumedB326
MELO3C033318.2	Bottle gourd (USVL1VR-Ls)	lsimedB161
MELO3C033318.2	Watermelon (Charleston Gray)	medwcgB525
MELO3C033318.2	Watermelon (97103) v1	medwmB578
MELO3C033318.2	Silver-seed gourd	carmedB0199
MELO3C033318.2	Silver-seed gourd	carmedB0299
MELO3C033318.2	Watermelon (97103) v2	medwmbB529
MELO3C033318.2	Wax gourd	medwgoB653