MELO3C033317.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C033317.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionS locus-related glycoprotein 1 binding pollen coat
Locationchr08 : 19213959 .. 19214442 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTTAACAAAACAATAGTTTCAAAATTTGCATATCTTAAGAATATGGCTTCTTTCCGTATCATTTGCTTTGCTCTTATATTTGCAGGTTCGTTTCCCTTAATTTCTTCCACAAATACAATATTATCATGTGTTAAAAAATCAAAAAATCATGAGACATATTAGGTTGCTAATTTGTATAGTTATGTTTTTATGCTTTTGTATAGTTGCATTGATCTTAGTGCCTCAAGATGTCTCAGCTGCCAAAAGATGTCAAGACGTTTTGTATAACACTGGGTGCTCTCTCAATGATTGTGGGAAGAAATGTTGGGAGAAGCATCATACTATTTCACATCAATGCATTCCAACTAATCCTTCTCAAACCATATATGCGTGTTATTGTTTCTTTGATTGTGGTGATCAAAAGAATTGATCTGCATGCTGACATCTCCCAATTTTATGTAATGTACTTTGTCACTTAAACATACAAATAATATCACACATCTT

mRNA sequence

ACTTAACAAAACAATAGTTTCAAAATTTGCATATCTTAAGAATATGGCTTCTTTCCGTATCATTTGCTTTGCTCTTATATTTGCAGTTGCATTGATCTTAGTGCCTCAAGATGTCTCAGCTGCCAAAAGATGTCAAGACGTTTTGTATAACACTGGGTGCTCTCTCAATGATTGTGGGAAGAAATGTTGGGAGAAGCATCATACTATTTCACATCAATGCATTCCAACTAATCCTTCTCAAACCATATATGCGTGTTATTGTTTCTTTGATTGTGGTGATCAAAAGAATTGATCTGCATGCTGACATCTCCCAATTTTATGTAATGTACTTTGTCACTTAAACATACAAATAATATCACACATCTT

Coding sequence (CDS)

ATGGCTTCTTTCCGTATCATTTGCTTTGCTCTTATATTTGCAGTTGCATTGATCTTAGTGCCTCAAGATGTCTCAGCTGCCAAAAGATGTCAAGACGTTTTGTATAACACTGGGTGCTCTCTCAATGATTGTGGGAAGAAATGTTGGGAGAAGCATCATACTATTTCACATCAATGCATTCCAACTAATCCTTCTCAAACCATATATGCGTGTTATTGTTTCTTTGATTGTGGTGATCAAAAGAATTGA

Protein sequence

MASFRIICFALIFAVALILVPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPTNPSQTIYACYCFFDCGDQKN
Homology
[Close]
BLAST of MELO3C033317.2 vs. NCBI nr
Match: KGN54897.1 (hypothetical protein Csa_4G576870 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 2.7e-37
Identity = 73/82 (89.02%), Postives = 77/82 (93.90%), Query Frame = 0 

Query: 1  MASFRIICFALIFAVALILVPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCI 60
          M S RIICFALIFAVAL+L  QDVSAA+RCQDVLYNTGC+LNDCGKKCWEKHHT+SHQCI
Sbjct: 1  MDSSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCI 60

Query: 61 PTNPSQTIYACYCFFDCGDQKN 83
          PTNPSQTIYACYCFFDCG QKN
Sbjct: 61 PTNPSQTIYACYCFFDCGGQKN 82

[Close]
BLAST of MELO3C033317.2 vs. NCBI nr
Match: KGN64987.1 (hypothetical protein Csa_1G172580 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 9.2e-22
Identity = 49/73 (67.12%), Postives = 58/73 (79.45%), Query Frame = 0 

Query: 6  IICFALIFAVALILVPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPTNPS 65
          I+   LI AVA+I +PQ   AA RCQD+LYN+GC+L DCG+KCWEKHH  S QCIPT+P 
Sbjct: 9  ILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPTDPD 68

Query: 66 QTIYACYCFFDCG 79
          QTIYACYCF+ CG
Sbjct: 69 QTIYACYCFYTCG 80

[Close]
BLAST of MELO3C033317.2 vs. NCBI nr
Match: KGN54810.1 (hypothetical protein Csa_4G507400 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 40/77 (51.95%), Postives = 56/77 (72.73%), Query Frame = 0 

Query: 1  MASFRIICFALIFAVALILVPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCI 60
          ++SFR+    +IFAV++ILVPQ  SA K CQD LY  GC  ++CG+KC + HH  + +CI
Sbjct: 21 LSSFRVAIIIVIFAVSMILVPQGTSALK-CQDRLYVGGCIQHECGQKCSQLHHGGTSKCI 80

Query: 61 PTNPSQTIYACYCFFDC 78
           T+P+ T YACYCF++C
Sbjct: 81 STDPTFTKYACYCFYNC 96

[Close]
BLAST of MELO3C033317.2 vs. NCBI nr
Match: OMO95288.1 (S locus-related glycoprotein 1 binding pollen coat [Corchorus olitorius])

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-10
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 0 

Query: 20 VPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPTNPSQTIYACYCFFDC 78
          V     A KRCQ +LY  GC+L DC KKC++K  +I  QCIPTN +QTIY C C ++C
Sbjct: 26 VAAQADAQKRCQKILYPKGCTLMDCRKKCFQKFGSIGGQCIPTNQAQTIYECLCVYNC 83

[Close]
BLAST of MELO3C033317.2 vs. NCBI nr
Match: XP_018498384.1 (PREDICTED: putative defensin-like protein 165 [Pyrus x bretschneideri])

HSP 1 Score: 72.8 bits (177), Expect = 6.2e-10
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 0 

Query: 7  ICFALIFAVALILVP-QDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPTNPS 66
          I   LIF+VAL     +   A KRCQ++LY + C+L DCG+KC+ KHH   H CI  NP+
Sbjct: 10 ILLVLIFSVALKCGNLRQTYAQKRCQELLYPSNCTLLDCGEKCFNKHHDQGHTCI-ANPA 69

Query: 67 QTIYACYCFFDC 78
           T YACYC ++C
Sbjct: 70 GTDYACYCIYNC 80

[Close]
BLAST of MELO3C033317.2 vs. TrEMBL
Match: tr|A0A0A0L2R3|A0A0A0L2R3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.8e-37
Identity = 73/82 (89.02%), Postives = 77/82 (93.90%), Query Frame = 0 

Query: 1  MASFRIICFALIFAVALILVPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCI 60
          M S RIICFALIFAVAL+L  QDVSAA+RCQDVLYNTGC+LNDCGKKCWEKHHT+SHQCI
Sbjct: 1  MDSSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCI 60

Query: 61 PTNPSQTIYACYCFFDCGDQKN 83
          PTNPSQTIYACYCFFDCG QKN
Sbjct: 61 PTNPSQTIYACYCFFDCGGQKN 82

[Close]
BLAST of MELO3C033317.2 vs. TrEMBL
Match: tr|A0A0A0LVZ5|A0A0A0LVZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 6.1e-22
Identity = 49/73 (67.12%), Postives = 58/73 (79.45%), Query Frame = 0 

Query: 6  IICFALIFAVALILVPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPTNPS 65
          I+   LI AVA+I +PQ   AA RCQD+LYN+GC+L DCG+KCWEKHH  S QCIPT+P 
Sbjct: 9  ILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPTDPD 68

Query: 66 QTIYACYCFFDCG 79
          QTIYACYCF+ CG
Sbjct: 69 QTIYACYCFYTCG 80

[Close]
BLAST of MELO3C033317.2 vs. TrEMBL
Match: tr|A0A0A0KYP7|A0A0A0KYP7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.9e-14
Identity = 40/77 (51.95%), Postives = 56/77 (72.73%), Query Frame = 0 

Query: 1  MASFRIICFALIFAVALILVPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCI 60
          ++SFR+    +IFAV++ILVPQ  SA K CQD LY  GC  ++CG+KC + HH  + +CI
Sbjct: 21 LSSFRVAIIIVIFAVSMILVPQGTSALK-CQDRLYVGGCIQHECGQKCSQLHHGGTSKCI 80

Query: 61 PTNPSQTIYACYCFFDC 78
           T+P+ T YACYCF++C
Sbjct: 81 STDPTFTKYACYCFYNC 96

[Close]
BLAST of MELO3C033317.2 vs. TrEMBL
Match: tr|A0A1R3JKF5|A0A1R3JKF5_9ROSI (S locus-related glycoprotein 1 binding pollen coat OS=Corchorus olitorius OX=93759 GN=COLO4_16008 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.2e-11
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 0 

Query: 20 VPQDVSAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPTNPSQTIYACYCFFDC 78
          V     A KRCQ +LY  GC+L DC KKC++K  +I  QCIPTN +QTIY C C ++C
Sbjct: 26 VAAQADAQKRCQKILYPKGCTLMDCRKKCFQKFGSIGGQCIPTNQAQTIYECLCVYNC 83

[Close]
BLAST of MELO3C033317.2 vs. TrEMBL
Match: tr|A0A1R3G6W7|A0A1R3G6W7_COCAP (S locus-related glycoprotein 1 binding pollen coat OS=Corchorus capsularis OX=210143 GN=CCACVL1_28320 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.3e-10
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 28 KRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPTNPSQTIYACYCFFDC 78
          KRCQ +LY  GC+L DC KKC++K  ++  QCIPTN +QTIY C C ++C
Sbjct: 33 KRCQKILYPRGCTLMDCRKKCFQKFGSVGGQCIPTNQAQTIYECLCVYNC 82

The following BLAST results are available for this feature:
BLAST of MELO3C033317.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54897.12.7e-3789.02hypothetical protein Csa_4G576870 [Cucumis sativus][more]
KGN64987.19.2e-2267.12hypothetical protein Csa_1G172580 [Cucumis sativus][more]
KGN54810.11.2e-1351.95hypothetical protein Csa_4G507400 [Cucumis sativus][more]
OMO95288.11.2e-1053.45S locus-related glycoprotein 1 binding pollen coat [Corchorus olitorius][more]
XP_018498384.16.2e-1050.00PREDICTED: putative defensin-like protein 165 [Pyrus x bretschneideri][more]
BLAST of MELO3C033317.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C033317.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C033317.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L2R3|A0A0A0L2R3_CUCSA1.8e-3789.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=4 SV=1[more]
tr|A0A0A0LVZ5|A0A0A0LVZ5_CUCSA6.1e-2267.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=4 SV=1[more]
tr|A0A0A0KYP7|A0A0A0KYP7_CUCSA7.9e-1451.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=4 SV=1[more]
tr|A0A1R3JKF5|A0A1R3JKF5_9ROSI8.2e-1153.45S locus-related glycoprotein 1 binding pollen coat OS=Corchorus olitorius OX=937... [more]
tr|A0A1R3G6W7|A0A1R3G6W7_COCAP5.3e-1056.00S locus-related glycoprotein 1 binding pollen coat OS=Corchorus capsularis OX=21... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010851SLR1_pollen-bd
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033317.2.1MELO3C033317.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010851S locus-related glycoprotein 1 binding pollen coat proteinPFAMPF07333SLR1-BPcoord: 26..77
e-value: 2.4E-6
score: 27.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C033317.2Silver-seed gourdcarmedB0199
MELO3C033317.2Silver-seed gourdcarmedB0299
MELO3C033317.2Watermelon (97103) v2medwmbB529
MELO3C033317.2Wax gourdmedwgoB653
MELO3C033317.2Cucurbita maxima (Rimu)cmamedB908
MELO3C033317.2Cucurbita moschata (Rifu)cmomedB691
MELO3C033317.2Cucurbita moschata (Rifu)cmomedB898
MELO3C033317.2Cucurbita pepo (Zucchini)cpemedB094
MELO3C033317.2Cucurbita pepo (Zucchini)cpemedB534
MELO3C033317.2Cucumber (Chinese Long) v2cumedB326
MELO3C033317.2Bottle gourd (USVL1VR-Ls)lsimedB161
MELO3C033317.2Watermelon (Charleston Gray)medwcgB525
MELO3C033317.2Watermelon (97103) v1medwmB578