MELO3C033316.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C033316.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionS locus-related glycoprotein 1 binding pollen coat
Locationchr08 : 19194042 .. 19194527 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTTAACAAAACAATAGTTTCAAAATTTGCATATCTTAAGAATATGGCTTCTTCCCGTATCATCTGCTTTGCTCTTATATTTGCAGGTTCGTTTCCTTTAATTTCTTCCACAAATACAATATTATCATGTGTTACGAAATCAAAAAACCATGAGACATATTAGATTGCTAATTTGTATAGTTATGTTTTTATGTTTTTGTATAGTTGCATTGATCTTAGTGCCTCAAGATGTCTTAGCTGCCAAAAGATGTCAAGACGTTTTGTATAACACTGGGTGCTCTCTCAATGATTGTGGGAAGAAATGTTGGGAGAAGCATCATACTATTTCACATCAATGCATTCCAACTAATCCTTCTCAAACCATATATGCGTGTTATTGTTTCTTTGATTGTGGTGATCAAAAGAATTGATCTGCATGCTGACATCTCCCAATTTTATGTAATGTACTTTATCACTTAAACTTACAAATAATATCACACATCTTCC

mRNA sequence

ACTTAACAAAACAATAGTTTCAAAATTTGCATATCTTAAGAATATGGCTTCTTCCCGTATCATCTGCTTTGCTCTTATATTTGCAGTTGCATTGATCTTAGTGCCTCAAGATGTCTTAGCTGCCAAAAGATGTCAAGACGTTTTGTATAACACTGGGTGCTCTCTCAATGATTGTGGGAAGAAATGTTGGGAGAAGCATCATACTATTTCACATCAATGCATTCCAACTAATCCTTCTCAAACCATATATGCGTGTTATTGTTTCTTTGATTGTGGTGATCAAAAGAATTGATCTGCATGCTGACATCTCCCAATTTTATGTAATGTACTTTATCACTTAAACTTACAAATAATATCACACATCTTCC

Coding sequence (CDS)

ATGGCTTCTTCCCGTATCATCTGCTTTGCTCTTATATTTGCAGTTGCATTGATCTTAGTGCCTCAAGATGTCTTAGCTGCCAAAAGATGTCAAGACGTTTTGTATAACACTGGGTGCTCTCTCAATGATTGTGGGAAGAAATGTTGGGAGAAGCATCATACTATTTCACATCAATGCATTCCAACTAATCCTTCTCAAACCATATATGCGTGTTATTGTTTCTTTGATTGTGGTGATCAAAAGAATTGA

Protein sequence

MASSRIICFALIFAVALILVPQDVLAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPTNPSQTIYACYCFFDCGDQKN
Homology
[Close]
BLAST of MELO3C033316.2 vs. NCBI nr
Match: KGN54897.1 (hypothetical protein Csa_4G576870 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 2.7e-37
Identity = 73/82 (89.02%), Postives = 77/82 (93.90%), Query Frame = 0 

Query: 1  MASSRIICFALIFAVALILVPQDVLAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCI 60
          M SSRIICFALIFAVAL+L  QDV AA+RCQDVLYNTGC+LNDCGKKCWEKHHT+SHQCI
Sbjct: 1  MDSSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCI 60

Query: 61 PTNPSQTIYACYCFFDCGDQKN 83
          PTNPSQTIYACYCFFDCG QKN
Sbjct: 61 PTNPSQTIYACYCFFDCGGQKN 82

[Close]
BLAST of MELO3C033316.2 vs. NCBI nr
Match: KGN64987.1 (hypothetical protein Csa_1G172580 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 2.8e-23
Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 0 

Query: 3  SSRIICFALIFAVALILVPQDVLAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPT 62
          SS I+   LI AVA+I +PQ  LAA RCQD+LYN+GC+L DCG+KCWEKHH  S QCIPT
Sbjct: 6  SSWILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPT 65

Query: 63 NPSQTIYACYCFFDCG 79
          +P QTIYACYCF+ CG
Sbjct: 66 DPDQTIYACYCFYTCG 80

[Close]
BLAST of MELO3C033316.2 vs. NCBI nr
Match: KGN54810.1 (hypothetical protein Csa_4G507400 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 3.9e-12
Identity = 38/77 (49.35%), Postives = 54/77 (70.13%), Query Frame = 0 

Query: 1  MASSRIICFALIFAVALILVPQDVLAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCI 60
          ++S R+    +IFAV++ILVPQ   A K CQD LY  GC  ++CG+KC + HH  + +CI
Sbjct: 21 LSSFRVAIIIVIFAVSMILVPQGTSALK-CQDRLYVGGCIQHECGQKCSQLHHGGTSKCI 80

Query: 61 PTNPSQTIYACYCFFDC 78
           T+P+ T YACYCF++C
Sbjct: 81 STDPTFTKYACYCFYNC 96

[Close]
BLAST of MELO3C033316.2 vs. NCBI nr
Match: OMO95288.1 (S locus-related glycoprotein 1 binding pollen coat [Corchorus olitorius])

HSP 1 Score: 74.3 bits (181), Expect = 2.1e-10
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 26 AAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPTNPSQTIYACYCFFDC 78
          A KRCQ +LY  GC+L DC KKC++K  +I  QCIPTN +QTIY C C ++C
Sbjct: 32 AQKRCQKILYPKGCTLMDCRKKCFQKFGSIGGQCIPTNQAQTIYECLCVYNC 83

[Close]
BLAST of MELO3C033316.2 vs. NCBI nr
Match: XP_018498384.1 (PREDICTED: putative defensin-like protein 165 [Pyrus x bretschneideri])

HSP 1 Score: 72.8 bits (177), Expect = 6.2e-10
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 0 

Query: 7  ICFALIFAVALILVP-QDVLAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPTNPS 66
          I   LIF+VAL     +   A KRCQ++LY + C+L DCG+KC+ KHH   H CI  NP+
Sbjct: 10 ILLVLIFSVALKCGNLRQTYAQKRCQELLYPSNCTLLDCGEKCFNKHHDQGHTCI-ANPA 69

Query: 67 QTIYACYCFFDC 78
           T YACYC ++C
Sbjct: 70 GTDYACYCIYNC 80

[Close]
BLAST of MELO3C033316.2 vs. TrEMBL
Match: tr|A0A0A0L2R3|A0A0A0L2R3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.8e-37
Identity = 73/82 (89.02%), Postives = 77/82 (93.90%), Query Frame = 0 

Query: 1  MASSRIICFALIFAVALILVPQDVLAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCI 60
          M SSRIICFALIFAVAL+L  QDV AA+RCQDVLYNTGC+LNDCGKKCWEKHHT+SHQCI
Sbjct: 1  MDSSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCI 60

Query: 61 PTNPSQTIYACYCFFDCGDQKN 83
          PTNPSQTIYACYCFFDCG QKN
Sbjct: 61 PTNPSQTIYACYCFFDCGGQKN 82

[Close]
BLAST of MELO3C033316.2 vs. TrEMBL
Match: tr|A0A0A0LVZ5|A0A0A0LVZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.9e-23
Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 0 

Query: 3  SSRIICFALIFAVALILVPQDVLAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPT 62
          SS I+   LI AVA+I +PQ  LAA RCQD+LYN+GC+L DCG+KCWEKHH  S QCIPT
Sbjct: 6  SSWILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPT 65

Query: 63 NPSQTIYACYCFFDCG 79
          +P QTIYACYCF+ CG
Sbjct: 66 DPDQTIYACYCFYTCG 80

[Close]
BLAST of MELO3C033316.2 vs. TrEMBL
Match: tr|A0A0A0KYP7|A0A0A0KYP7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.6e-12
Identity = 38/77 (49.35%), Postives = 54/77 (70.13%), Query Frame = 0 

Query: 1  MASSRIICFALIFAVALILVPQDVLAAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCI 60
          ++S R+    +IFAV++ILVPQ   A K CQD LY  GC  ++CG+KC + HH  + +CI
Sbjct: 21 LSSFRVAIIIVIFAVSMILVPQGTSALK-CQDRLYVGGCIQHECGQKCSQLHHGGTSKCI 80

Query: 61 PTNPSQTIYACYCFFDC 78
           T+P+ T YACYCF++C
Sbjct: 81 STDPTFTKYACYCFYNC 96

[Close]
BLAST of MELO3C033316.2 vs. TrEMBL
Match: tr|A0A1R3JKF5|A0A1R3JKF5_9ROSI (S locus-related glycoprotein 1 binding pollen coat OS=Corchorus olitorius OX=93759 GN=COLO4_16008 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-10
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 26 AAKRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPTNPSQTIYACYCFFDC 78
          A KRCQ +LY  GC+L DC KKC++K  +I  QCIPTN +QTIY C C ++C
Sbjct: 32 AQKRCQKILYPKGCTLMDCRKKCFQKFGSIGGQCIPTNQAQTIYECLCVYNC 83

[Close]
BLAST of MELO3C033316.2 vs. TrEMBL
Match: tr|A0A1R3G6W7|A0A1R3G6W7_COCAP (S locus-related glycoprotein 1 binding pollen coat OS=Corchorus capsularis OX=210143 GN=CCACVL1_28320 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.1e-10
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 28 KRCQDVLYNTGCSLNDCGKKCWEKHHTISHQCIPTNPSQTIYACYCFFDC 78
          KRCQ +LY  GC+L DC KKC++K  ++  QCIPTN +QTIY C C ++C
Sbjct: 33 KRCQKILYPRGCTLMDCRKKCFQKFGSVGGQCIPTNQAQTIYECLCVYNC 82

The following BLAST results are available for this feature:
BLAST of MELO3C033316.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54897.12.7e-3789.02hypothetical protein Csa_4G576870 [Cucumis sativus][more]
KGN64987.12.8e-2368.42hypothetical protein Csa_1G172580 [Cucumis sativus][more]
KGN54810.13.9e-1249.35hypothetical protein Csa_4G507400 [Cucumis sativus][more]
OMO95288.12.1e-1057.69S locus-related glycoprotein 1 binding pollen coat [Corchorus olitorius][more]
XP_018498384.16.2e-1050.00PREDICTED: putative defensin-like protein 165 [Pyrus x bretschneideri][more]
BLAST of MELO3C033316.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C033316.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C033316.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L2R3|A0A0A0L2R3_CUCSA1.8e-3789.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=4 SV=1[more]
tr|A0A0A0LVZ5|A0A0A0LVZ5_CUCSA1.9e-2368.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=4 SV=1[more]
tr|A0A0A0KYP7|A0A0A0KYP7_CUCSA2.6e-1249.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=4 SV=1[more]
tr|A0A1R3JKF5|A0A1R3JKF5_9ROSI1.4e-1057.69S locus-related glycoprotein 1 binding pollen coat OS=Corchorus olitorius OX=937... [more]
tr|A0A1R3G6W7|A0A1R3G6W7_COCAP4.1e-1056.00S locus-related glycoprotein 1 binding pollen coat OS=Corchorus capsularis OX=21... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010851SLR1_pollen-bd
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033316.2.1MELO3C033316.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010851S locus-related glycoprotein 1 binding pollen coat proteinPFAMPF07333SLR1-BPcoord: 27..77
e-value: 1.9E-6
score: 28.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C033316.2Watermelon (97103) v2medwmbB529
MELO3C033316.2Wax gourdmedwgoB653
MELO3C033316.2Cucurbita maxima (Rimu)cmamedB908
MELO3C033316.2Cucurbita moschata (Rifu)cmomedB691
MELO3C033316.2Cucurbita moschata (Rifu)cmomedB898
MELO3C033316.2Cucurbita pepo (Zucchini)cpemedB094
MELO3C033316.2Cucurbita pepo (Zucchini)cpemedB534
MELO3C033316.2Cucumber (Chinese Long) v2cumedB326
MELO3C033316.2Bottle gourd (USVL1VR-Ls)lsimedB161
MELO3C033316.2Watermelon (Charleston Gray)medwcgB525
MELO3C033316.2Watermelon (97103) v1medwmB578
MELO3C033316.2Silver-seed gourdcarmedB0199
MELO3C033316.2Silver-seed gourdcarmedB0299