MELO3C033313.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C033313.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionGuanylate-binding family protein
Locationchr08 : 19025208 .. 19028040 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTTCATTCATTTAGGTAAGAAGAGATTGTATTCATCTTCACTTAATCCTTTGTCTTGTCTTGGAAATTGGTGGGATATTTTGAATCTTTTTTAGAACACTTCTGGTTTGATGTTAAATGTGACTAAAATCTTGCTTATTTGTTTCAATATGAGTAAGGAGGGAGTTGAAGAATGGGCAGAGGAGTTTCAATATAAAATAGGAGCATTTCTGATTAGTTACCTTGGTTTTTCTTTAGGTTGGAATCACCAAAGAAAAGCTTTTTGGAATATGTTAGTTGCTAAGCTCAAGGCTAAGTGGATGGTTTTGATAGATGGACATAATGATAGATCGCATAAAAGAGGCCTATAGTTATGATTGTAAAGATAATGATAGTGAAGTTTGGAATGTAGCTAGGCCTTAGAAGGGGCTCTTTTTGACCGAGTTAATTAGTTGGATGGCTTTGGTAGATAGAAACAATACAGTGCATTTGTGGGAAGGAGTGGAAAACATTTTATGGTCATTAGAGGGATCTGGAAGCATAGAGGCTATTTTCATTGTAACTTAATCATTTTTGTTGTTTGTTGAATGTTCGTTGTTCTGTTAGTGGTTACGTTGAGAAAGAGTAGCAACAATATTGATAGCAAATGATAGATATCTATCCATGTCTATACCAGATAGACATGGATAGGGATAAAAAATTTTCTTTATCTATCATTGTCTATTTTAATACAGCCTTTTCTGTCAAACAACTTAAAAAGTGCAATGCAGCAATTGATGCCTTTGGTGGGGCCAAAGCTTAAATAGAACCAGCAAATCCTTTGGAGTATTGTGGGGAAAGCAATACTCGCTGATTTATGGTTTGAAAGGAACCCAAGAGTTCCATGACAAGGAAACTAGTTTGCTTGAGCTGAAGCTACCTGGTTTAATGCTTTGGTCTTCTCTCTCCAAGGCTTTTGCAGATTATTCAAGGCAGGATATTAGCCTAAACTAGAGTGCTCTTATCTCCATGAATTAGAATTCTTTCTGCTGTTTTTGTTCCTTCTTGGCGACGGCGGCAACAACTACAAATGACTATATGAAGCTCTTCCTCTTGATTCACTTCATAGTCTCATAGTCTTGTTGTTTTTATGAGCTTTTGATGGCCATGAATTAGAATTCTTTCTGTTGTTTTTGTTCCTTCTTGGCGGCGGCGGCAGCAGCTACATATGCCTTGAGACTGGAGGTTTTTAACATTCCTTTCTGTTCAATATGTAATCCTATTTCATCAACATCGGTTAAGAAACATTTCTCATGCATTAATTGAACAAATATGAATGCTATCCTTAGGCTCACTTGTGGGTTAAAACTGTCAGTACACACGCATATATTGTTTTTCTTCTTCCAAAGATTTGGTTTACCTTTTCTAGTATGGATATGATTTTGGTTTCAGTAGAATATTTAATTGCTCCATGCCATTGCAAAGGCACTCAAAAGTATGCCATAGATCTTGTCTTGATAATTGGAGGTCCACAAAGGTCAGTTTTCACTCACTTCGTGTTTGCTTCTCTATTCTTTATTCACACTTTTTTCCTGGGTAATGGAATGTGGTATCAACTGCTATTCCAACGTAAAACTTTTACTTACTGTCATCAATCTGATACATCTGCTTTCAAGAATGATCAAGTTTTCAAGGTTTTGACTTCTAATCAATTTCAGTAATTCTGTCAATATAAGCCTTCATGACATGGCAATCTAAATTCTTACCTACAGTTAAACCCTTCACTCAAATTTAGACCTTGCACAATTTAGTATACATAGAGAAACTAAAATAAAGCAAGTTGATGAATATACCACTGATGCGCACAAGGTGTTTGATAAAATGTGTGAATAGAGAAAAAGGTGATTTAAAGGATTTTTTTCCTTTTTATCCTTTGATTATTATGAATTAAAACCTTCGGTTCTTAATTATCTGTTTTGTATTTTTAGTTCCTTTGATGTTTATGCTCTGTTGCTTTGGATGTTTCTTTAGCTTGTTTTTCTTTTGATGTTTATATTGGGCTTCAAGAAATTAGTACAAACTATGTTGTAGAATTGTTCATTTACTTGAGTTGGTGATTTTCTAATGCAGAATTACAAAAGAAATGCATATACAAAAGCAGACTTGCAATGCACGAATGCATATACAAAAGAAGTTGAGAGTTGCTTGCCTTCTGATGCAAATATCAATAATGTTGCGAAGGTATTTTAAATTTTATTTGTCTTTGTCTTCAATTAAGGACTATTTTTGTGGTTAGTTTCTGACGGGTATCGTTTGGTCTATTAAAAAACAATGTAAAGTATTAATGATCAGCTATGTTGATGATTCTGGTGGTCTGGAAGCAACTCTATGCATTAAATTCATTATGGTTGTTGGATAATAGAAACTGTGATTTTATTTGTGTAGTATGATTAACTTACTCTTAATAGTTGTTAGTTGATTTCTTTGGCTGAATAAGTTTCAAACATACTTTGTTGTTGTGATGTTATCTACATCTTATAGATTGGCCCTGCTGTTGGTGGTACTTATTTTAGCTCATGAACTGGAGGTAGTAGAGGATGCAGAATGCAAGTTTATTTGGAGCCAAGTTTCATTCAAGGTCATTGAGTTGGGTTGATAGAAGTAATGTTTTGTATATGACAATATCGAACAAATATGTAAAGCTTTCGAAATGTTGATACATATATGGTAAAATGTTAATATATGTTTAAAGTTTTGGAATTGTTCTAGTGCATATTTATGTTTGAATTTTAAAACTATATTTGATTTATATTTGTCGTTTATATGTAGTTGAATTCTTGGACCAATGGGAGCATAATACAGAAACAATAA

mRNA sequence

ATGACCTTCATTCATTTAGGTTGGAATCACCAAAGAAAAGCTTTTTGGAATATGTTAGTTGCTAAGCTCAAGGCTAAGTGGATGAATTACAAAAGAAATGCATATACAAAAGCAGACTTGCAATGCACGAATGCATATACAAAAGAAGTTGAGAGTTGCTTGCCTTCTGATGCAAATATCAATAATGTTGCGAAGTTGAATTCTTGGACCAATGGGAGCATAATACAGAAACAATAA

Coding sequence (CDS)

ATGACCTTCATTCATTTAGGTTGGAATCACCAAAGAAAAGCTTTTTGGAATATGTTAGTTGCTAAGCTCAAGGCTAAGTGGATGAATTACAAAAGAAATGCATATACAAAAGCAGACTTGCAATGCACGAATGCATATACAAAAGAAGTTGAGAGTTGCTTGCCTTCTGATGCAAATATCAATAATGTTGCGAAGTTGAATTCTTGGACCAATGGGAGCATAATACAGAAACAATAA

Protein sequence

MTFIHLGWNHQRKAFWNMLVAKLKAKWMNYKRNAYTKADLQCTNAYTKEVESCLPSDANINNVAKLNSWTNGSIIQKQ
Homology
[Close]
BLAST of MELO3C033313.2 vs. NCBI nr
Match: XP_008464326.1 (PREDICTED: AP-3 complex subunit sigma-like [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 5.3e-11
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 29  NYKRNAYTKADLQCTNAYTKEVESCLPSDANINNVAKLNSWTNGSI 75
           NYKRNAYTKADLQC NAYTKEVESC PSDANINNVAK  + T  SI
Sbjct: 101 NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKFLTGTVWSI 146

[Close]
BLAST of MELO3C033313.2 vs. TAIR10
Match: AT5G46070.1 (Guanylate-binding family protein)

HSP 1 Score: 43.1 bits (100), Expect = 9.0e-05
Identity = 24/65 (36.92%), Postives = 41/65 (63.08%), Query Frame = 0 

Query: 6   LGWNHQRKAFWNMLVAKLKAKWMNYKRNAYTKADLQCTNAYTKEVE----SCLPSDANIN 65
           +G    RK F ++L   LK K+ +YK+NA+ +ADL+CT+   +  +    +C  S+AN++
Sbjct: 400 VGNGSARKKFEDLLHKDLKKKFEDYKKNAFMEADLRCTSTIQRMEKQLRAACHASNANMD 459

Query: 66  NVAKL 67
           NV K+
Sbjct: 460 NVVKV 464

[Close]
BLAST of MELO3C033313.2 vs. TrEMBL
Match: tr|A0A1S3CL75|A0A1S3CL75_CUCME (AP-3 complex subunit sigma-like OS=Cucumis melo OX=3656 GN=LOC103502239 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.5e-11
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 29  NYKRNAYTKADLQCTNAYTKEVESCLPSDANINNVAKLNSWTNGSI 75
           NYKRNAYTKADLQC NAYTKEVESC PSDANINNVAK  + T  SI
Sbjct: 101 NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAKFLTGTVWSI 146

The following BLAST results are available for this feature:
BLAST of MELO3C033313.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008464326.15.3e-1182.61PREDICTED: AP-3 complex subunit sigma-like [Cucumis melo][more]
BLAST of MELO3C033313.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G46070.19.0e-0536.92Guanylate-binding family protein[more]
BLAST of MELO3C033313.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C033313.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CL75|A0A1S3CL75_CUCME3.5e-1182.61AP-3 complex subunit sigma-like OS=Cucumis melo OX=3656 GN=LOC103502239 PE=4 SV=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0005730 nucleolus
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0000166 nucleotide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033313.2.1MELO3C033313.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C033313.2Cucurbita maxima (Rimu)cmamedB908
MELO3C033313.2Cucurbita moschata (Rifu)cmomedB691
MELO3C033313.2Cucurbita moschata (Rifu)cmomedB898
MELO3C033313.2Cucurbita pepo (Zucchini)cpemedB094
MELO3C033313.2Cucurbita pepo (Zucchini)cpemedB534
MELO3C033313.2Wild cucumber (PI 183967)cpimedB315
MELO3C033313.2Bottle gourd (USVL1VR-Ls)lsimedB161
MELO3C033313.2Watermelon (Charleston Gray)medwcgB525
MELO3C033313.2Watermelon (97103) v1medwmB578
MELO3C033313.2Silver-seed gourdcarmedB0199
MELO3C033313.2Silver-seed gourdcarmedB0299
MELO3C033313.2Watermelon (97103) v2medwmbB529
MELO3C033313.2Wax gourdmedwgoB653