MELO3C033312.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C033312.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionS locus-related glycoprotein 1 binding pollen coat
Locationchr08 : 19013089 .. 19013647 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGGATGGGATTTAATGTAATTTTTAGTATTTAAACCATTGAAAATCACAGAATTTCTTCGACCCAATTTAACAAAAGAATAGTTTCGAAATTTGCATATCATAAAAATATGGCTTCTTCTCGTATCATCTGCTTTGCTCATATTTTTTGTAGGTTCGTTTCCTTTAATATCTTCCACAGATACTATATTATCGTGTTTCAAAATCAAATAACCATGAGACGTATTAGATTGCTAAATTTGTATATTTATCTTTTTATGTTTTTGTATATAGTTACATTGATCTTGGTGCCTCAAGACGCCTCAGCTACCAAAAGATGTCAAGACATTTTGTATAACACTAGGTGCTCTCTCAATGACTGTAGGAAGAAATGTTGGAAGAAGCATCATACTATTTCACATCAATTCATTCCAAATAATCCTTCTCAAACCATCTATGCTTGTTATTGTTTCTTTGATTGTAGTGATCAAAAGAATTGATCTGCATGCTGACATCTTCCCACTTTTATGTAATGTACTTTGTCACTTAAACTTCCAAATAATATCACACATCTTTC

mRNA sequence

ATGCATGGATGGGATTTAATGTTCGTTTCCTTTAATATCTTCCACAGATACTATATTATCGTGTTTCAAAATCAAATAACCATGAGACTTACATTGATCTTGGTGCCTCAAGACGCCTCAGCTACCAAAAGATGTCAAGACATTTTGTATAACACTAGGTGCTCTCTCAATGACTGTAGGAAGAAATGTTGGAAGAAGCATCATACTATTTCACATCAATTCATTCCAAATAATCCTTCTCAAACCATCTATGCTTGTTATTGTTTCTTTGATTGTAGTGATCAAAAGAATTGATCTGCATGCTGACATCTTCCCACTTTTATGTAATGTACTTTGTCACTTAAACTTCCAAATAATATCACACATCTTTC

Coding sequence (CDS)

ATGCATGGATGGGATTTAATGTTCGTTTCCTTTAATATCTTCCACAGATACTATATTATCGTGTTTCAAAATCAAATAACCATGAGACTTACATTGATCTTGGTGCCTCAAGACGCCTCAGCTACCAAAAGATGTCAAGACATTTTGTATAACACTAGGTGCTCTCTCAATGACTGTAGGAAGAAATGTTGGAAGAAGCATCATACTATTTCACATCAATTCATTCCAAATAATCCTTCTCAAACCATCTATGCTTGTTATTGTTTCTTTGATTGTAGTGATCAAAAGAATTGA

Protein sequence

MHGWDLMFVSFNIFHRYYIIVFQNQITMRLTLILVPQDASATKRCQDILYNTRCSLNDCRKKCWKKHHTISHQFIPNNPSQTIYACYCFFDCSDQKN
Homology
[Close]
BLAST of MELO3C033312.2 vs. NCBI nr
Match: KGN54897.1 (hypothetical protein Csa_4G576870 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 1.4e-24
Identity = 50/68 (73.53%), Postives = 57/68 (83.82%), Query Frame = 0 

Query: 30 LTLILVPQDASATKRCQDILYNTRCSLNDCRKKCWKKHHTISHQFIPNNPSQTIYACYCF 89
          + L+L  QD SA +RCQD+LYNT C+LNDC KKCW+KHHT+SHQ IP NPSQTIYACYCF
Sbjct: 15 VALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCIPTNPSQTIYACYCF 74

Query: 90 FDCSDQKN 98
          FDC  QKN
Sbjct: 75 FDCGGQKN 82

[Close]
BLAST of MELO3C033312.2 vs. NCBI nr
Match: KGN64987.1 (hypothetical protein Csa_1G172580 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 7.5e-15
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 0 

Query: 26 ITMRLTLILVPQDASATKRCQDILYNTRCSLNDCRKKCWKKHHTISHQFIPNNPSQTIYA 85
          + + + +I +PQ A A  RCQDILYN+ C+L DC +KCW+KHH  S Q IP +P QTIYA
Sbjct: 14 LIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPTDPDQTIYA 73

Query: 86 CYCFFDC 93
          CYCF+ C
Sbjct: 74 CYCFYTC 79

[Close]
BLAST of MELO3C033312.2 vs. NCBI nr
Match: OMO95288.1 (S locus-related glycoprotein 1 binding pollen coat [Corchorus olitorius])

HSP 1 Score: 69.3 bits (168), Expect = 8.0e-09
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 0 

Query: 35 VPQDASATKRCQDILYNTRCSLNDCRKKCWKKHHTISHQFIPNNPSQTIYACYCFFDC 93
          V   A A KRCQ ILY   C+L DCRKKC++K  +I  Q IP N +QTIY C C ++C
Sbjct: 26 VAAQADAQKRCQKILYPKGCTLMDCRKKCFQKFGSIGGQCIPTNQAQTIYECLCVYNC 83

[Close]
BLAST of MELO3C033312.2 vs. NCBI nr
Match: OMO53797.1 (S locus-related glycoprotein 1 binding pollen coat [Corchorus capsularis])

HSP 1 Score: 65.1 bits (157), Expect = 1.5e-07
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 0 

Query: 43 KRCQDILYNTRCSLNDCRKKCWKKHHTISHQFIPNNPSQTIYACYCFFDC 93
          KRCQ ILY   C+L DCRKKC++K  ++  Q IP N +QTIY C C ++C
Sbjct: 33 KRCQKILYPRGCTLMDCRKKCFQKFGSVGGQCIPTNQAQTIYECLCVYNC 82

[Close]
BLAST of MELO3C033312.2 vs. NCBI nr
Match: XP_018498384.1 (PREDICTED: putative defensin-like protein 165 [Pyrus x bretschneideri])

HSP 1 Score: 64.3 bits (155), Expect = 2.6e-07
Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 41 ATKRCQDILYNTRCSLNDCRKKCWKKHHTISHQFIPNNPSQTIYACYCFFDC 93
          A KRCQ++LY + C+L DC +KC+ KHH   H  I  NP+ T YACYC ++C
Sbjct: 30 AQKRCQELLYPSNCTLLDCGEKCFNKHHDQGHTCIA-NPAGTDYACYCIYNC 80

[Close]
BLAST of MELO3C033312.2 vs. TrEMBL
Match: tr|A0A0A0L2R3|A0A0A0L2R3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 9.0e-25
Identity = 50/68 (73.53%), Postives = 57/68 (83.82%), Query Frame = 0 

Query: 30 LTLILVPQDASATKRCQDILYNTRCSLNDCRKKCWKKHHTISHQFIPNNPSQTIYACYCF 89
          + L+L  QD SA +RCQD+LYNT C+LNDC KKCW+KHHT+SHQ IP NPSQTIYACYCF
Sbjct: 15 VALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCIPTNPSQTIYACYCF 74

Query: 90 FDCSDQKN 98
          FDC  QKN
Sbjct: 75 FDCGGQKN 82

[Close]
BLAST of MELO3C033312.2 vs. TrEMBL
Match: tr|A0A0A0LVZ5|A0A0A0LVZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.0e-15
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 0 

Query: 26 ITMRLTLILVPQDASATKRCQDILYNTRCSLNDCRKKCWKKHHTISHQFIPNNPSQTIYA 85
          + + + +I +PQ A A  RCQDILYN+ C+L DC +KCW+KHH  S Q IP +P QTIYA
Sbjct: 14 LIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPTDPDQTIYA 73

Query: 86 CYCFFDC 93
          CYCF+ C
Sbjct: 74 CYCFYTC 79

[Close]
BLAST of MELO3C033312.2 vs. TrEMBL
Match: tr|A0A1R3JKF5|A0A1R3JKF5_9ROSI (S locus-related glycoprotein 1 binding pollen coat OS=Corchorus olitorius OX=93759 GN=COLO4_16008 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.3e-09
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 0 

Query: 35 VPQDASATKRCQDILYNTRCSLNDCRKKCWKKHHTISHQFIPNNPSQTIYACYCFFDC 93
          V   A A KRCQ ILY   C+L DCRKKC++K  +I  Q IP N +QTIY C C ++C
Sbjct: 26 VAAQADAQKRCQKILYPKGCTLMDCRKKCFQKFGSIGGQCIPTNQAQTIYECLCVYNC 83

[Close]
BLAST of MELO3C033312.2 vs. TrEMBL
Match: tr|A0A1R3G6W7|A0A1R3G6W7_COCAP (S locus-related glycoprotein 1 binding pollen coat OS=Corchorus capsularis OX=210143 GN=CCACVL1_28320 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.0e-07
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 0 

Query: 43 KRCQDILYNTRCSLNDCRKKCWKKHHTISHQFIPNNPSQTIYACYCFFDC 93
          KRCQ ILY   C+L DCRKKC++K  ++  Q IP N +QTIY C C ++C
Sbjct: 33 KRCQKILYPRGCTLMDCRKKCFQKFGSVGGQCIPTNQAQTIYECLCVYNC 82

[Close]
BLAST of MELO3C033312.2 vs. TrEMBL
Match: tr|A0A0A0KYP7|A0A0A0KYP7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 29/69 (42.03%), Postives = 44/69 (63.77%), Query Frame = 0 

Query: 26 ITMRLTLILVPQDASATKRCQDILYNTRCSLNDCRKKCWKKHHTISHQFIPNNPSQTIYA 85
          +   +++ILVPQ  SA K CQD LY   C  ++C +KC + HH  + + I  +P+ T YA
Sbjct: 31 VIFAVSMILVPQGTSALK-CQDRLYVGGCIQHECGQKCSQLHHGGTSKCISTDPTFTKYA 90

Query: 86 CYCFFDCSD 95
          CYCF++C +
Sbjct: 91 CYCFYNCPE 98

The following BLAST results are available for this feature:
BLAST of MELO3C033312.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54897.11.4e-2473.53hypothetical protein Csa_4G576870 [Cucumis sativus][more]
KGN64987.17.5e-1556.72hypothetical protein Csa_1G172580 [Cucumis sativus][more]
OMO95288.18.0e-0953.45S locus-related glycoprotein 1 binding pollen coat [Corchorus olitorius][more]
OMO53797.11.5e-0754.00S locus-related glycoprotein 1 binding pollen coat [Corchorus capsularis][more]
XP_018498384.12.6e-0751.92PREDICTED: putative defensin-like protein 165 [Pyrus x bretschneideri][more]
BLAST of MELO3C033312.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C033312.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C033312.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L2R3|A0A0A0L2R3_CUCSA9.0e-2573.53Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=4 SV=1[more]
tr|A0A0A0LVZ5|A0A0A0LVZ5_CUCSA5.0e-1556.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=4 SV=1[more]
tr|A0A1R3JKF5|A0A1R3JKF5_9ROSI5.3e-0953.45S locus-related glycoprotein 1 binding pollen coat OS=Corchorus olitorius OX=937... [more]
tr|A0A1R3G6W7|A0A1R3G6W7_COCAP1.0e-0754.00S locus-related glycoprotein 1 binding pollen coat OS=Corchorus capsularis OX=21... [more]
tr|A0A0A0KYP7|A0A0A0KYP7_CUCSA1.1e-0642.03Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010851SLR1_pollen-bd
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033312.2.1MELO3C033312.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010851S locus-related glycoprotein 1 binding pollen coat proteinPFAMPF07333SLR1-BPcoord: 41..92
e-value: 1.8E-5
score: 25.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C033312.2Watermelon (97103) v2medwmbB529
MELO3C033312.2Wax gourdmedwgoB653
MELO3C033312.2Cucurbita maxima (Rimu)cmamedB908
MELO3C033312.2Cucurbita moschata (Rifu)cmomedB691
MELO3C033312.2Cucurbita moschata (Rifu)cmomedB898
MELO3C033312.2Cucurbita pepo (Zucchini)cpemedB094
MELO3C033312.2Cucurbita pepo (Zucchini)cpemedB534
MELO3C033312.2Wild cucumber (PI 183967)cpimedB315
MELO3C033312.2Bottle gourd (USVL1VR-Ls)lsimedB161
MELO3C033312.2Watermelon (Charleston Gray)medwcgB525
MELO3C033312.2Watermelon (97103) v1medwmB578
MELO3C033312.2Silver-seed gourdcarmedB0199
MELO3C033312.2Silver-seed gourdcarmedB0299