MELO3C033311.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C033311.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionDNA repair protein UVH3
Locationchr08 : 18997190 .. 18997719 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTTTTTTGCACTTTACTCCATCGGCAAGCCAGATCTACAATATACTTAAGAAAATTGAATATCCCCTTACTAAACTTGCTTCATATGCTGCAGATTATGCTGGAAAAAGTTTGGGTGGGAGAACTCGAAGGCAGATGAATTGGTTTTGCCAGTCCTAAAAGAGTACACCAAACATGAGGTTAGTTACTTTCACTTATAGCTATTATGTTTGCAAAGGCTTATGTTGAACGATTAACAAAAGGAAAGTGGAGGAAGAGTGCATTTCTTACGTGGAAACCATCTTTAGTAACAAATAAGAAGGGATCTTTTATTTTGCGTGCTTTTATCCCCACTCAGATTTTTGTCCTAGTCCATAAAATTATCAAAGAAAATTTTATGTTTCATTTATTTAAACGTTATGTTTCAAAGGGCGGCCCCCGATCTTTCTCCACTGCATGTTCTGAAAAACCCAATTCCTGTTTTTACCAAACTTTGAAGAATCTGTGTGCGATTTTGTGGAATATTATGTATCCTCTTCGTCAATAA

mRNA sequence

ATGATATTATGCTGGAAAAAGTTTGGGTGGGAGAACTCGAAGGCAGATGAATTGGTTTTGCCAGTCCTAAAAGAGTACACCAAACATGAGGGCGGCCCCCGATCTTTCTCCACTGCATGTTCTGAAAAACCCAATTCCTGTTTTTACCAAACTTTGAAGAATCTGTGTGCGATTTTGTGGAATATTATGTATCCTCTTCGTCAATAA

Coding sequence (CDS)

ATGATATTATGCTGGAAAAAGTTTGGGTGGGAGAACTCGAAGGCAGATGAATTGGTTTTGCCAGTCCTAAAAGAGTACACCAAACATGAGGGCGGCCCCCGATCTTTCTCCACTGCATGTTCTGAAAAACCCAATTCCTGTTTTTACCAAACTTTGAAGAATCTGTGTGCGATTTTGTGGAATATTATGTATCCTCTTCGTCAATAA

Protein sequence

MILCWKKFGWENSKADELVLPVLKEYTKHEGGPRSFSTACSEKPNSCFYQTLKNLCAILWNIMYPLRQ
Homology
[Close]
BLAST of MELO3C033311.2 vs. NCBI nr
Match: XP_016899699.1 (PREDICTED: LOW QUALITY PROTEIN: DNA repair protein UVH3 [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 5.3e-07
Identity = 25/28 (89.29%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 3    LCWKKFGWENSKADELVLPVLKEYTKHE 31
            LCW+KFGWENSKADEL+LPVLKEY+KHE
Sbjct: 1144 LCWEKFGWENSKADELLLPVLKEYSKHE 1171

[Close]
BLAST of MELO3C033311.2 vs. NCBI nr
Match: XP_022150078.1 (DNA repair protein UVH3 isoform X1 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 24/28 (85.71%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 3    LCWKKFGWENSKADELVLPVLKEYTKHE 31
            LCW+KFGW+NSKADEL+LPVLKEY+KHE
Sbjct: 1191 LCWEKFGWDNSKADELLLPVLKEYSKHE 1218

[Close]
BLAST of MELO3C033311.2 vs. NCBI nr
Match: XP_022150080.1 (DNA repair protein UVH3 isoform X2 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 24/28 (85.71%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 3    LCWKKFGWENSKADELVLPVLKEYTKHE 31
            LCW+KFGW+NSKADEL+LPVLKEY+KHE
Sbjct: 1189 LCWEKFGWDNSKADELLLPVLKEYSKHE 1216

[Close]
BLAST of MELO3C033311.2 vs. NCBI nr
Match: XP_022150081.1 (DNA repair protein UVH3 isoform X3 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 24/28 (85.71%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 3    LCWKKFGWENSKADELVLPVLKEYTKHE 31
            LCW+KFGW+NSKADEL+LPVLKEY+KHE
Sbjct: 1166 LCWEKFGWDNSKADELLLPVLKEYSKHE 1193

[Close]
BLAST of MELO3C033311.2 vs. NCBI nr
Match: XP_004141182.1 (PREDICTED: DNA repair protein UVH3 isoform X1 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 2.0e-06
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 0 

Query: 3    LCWKKFGWENSKADELVLPVLKEYTKHE 31
            LCW+KFGWENSKADEL+LPVL EY+KHE
Sbjct: 1124 LCWEKFGWENSKADELLLPVLNEYSKHE 1151

[Close]
BLAST of MELO3C033311.2 vs. TAIR10
Match: AT3G28030.1 (5'-3' exonuclease family protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.1e-06
Identity = 19/28 (67.86%), Postives = 21/28 (75.00%), Query Frame = 0 

Query: 3    LCWKKFGWENSKADELVLPVLKEYTKHE 31
            LCW+KF W   K DEL+LPVLKEY K E
Sbjct: 1150 LCWEKFNWNGKKTDELLLPVLKEYEKRE 1177

[Close]
BLAST of MELO3C033311.2 vs. Swiss-Prot
Match: sp|Q9ATY5|UVH3_ARATH (DNA repair protein UVH3 OS=Arabidopsis thaliana OX=3702 GN=UVH3 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.0e-05
Identity = 19/28 (67.86%), Postives = 21/28 (75.00%), Query Frame = 0 

Query: 3    LCWKKFGWENSKADELVLPVLKEYTKHE 31
            LCW+KF W   K DEL+LPVLKEY K E
Sbjct: 1150 LCWEKFNWNGKKTDELLLPVLKEYEKRE 1177

[Close]
BLAST of MELO3C033311.2 vs. TrEMBL
Match: tr|A0A1S4DUP2|A0A1S4DUP2_CUCME (LOW QUALITY PROTEIN: DNA repair protein UVH3 OS=Cucumis melo OX=3656 GN=LOC103487179 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-07
Identity = 25/28 (89.29%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 3    LCWKKFGWENSKADELVLPVLKEYTKHE 31
            LCW+KFGWENSKADEL+LPVLKEY+KHE
Sbjct: 1144 LCWEKFGWENSKADELLLPVLKEYSKHE 1171

[Close]
BLAST of MELO3C033311.2 vs. TrEMBL
Match: tr|M7YKN2|M7YKN2_TRIUA (DNA repair protein UVH3 OS=Triticum urartu OX=4572 GN=TRIUR3_14056 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-06
Identity = 29/53 (54.72%), Postives = 33/53 (62.26%), Query Frame = 0 

Query: 3    LCWKKFGWENSKADELVLPVLKEYTKHEGGPRSFSTACSEKPNSCFYQTLKNL 56
            LCW++FGW   KADEL+LPVLKEY KHEG   +F     E  NSC    L  L
Sbjct: 1020 LCWERFGWNKEKADELLLPVLKEYNKHEGMISAF-----EYANSCGLVVLTQL 1067

[Close]
BLAST of MELO3C033311.2 vs. TrEMBL
Match: tr|A0A0A0LG49|A0A0A0LG49_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G835790 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-06
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 0 

Query: 3    LCWKKFGWENSKADELVLPVLKEYTKHE 31
            LCW+KFGWENSKADEL+LPVL EY+KHE
Sbjct: 1164 LCWEKFGWENSKADELLLPVLNEYSKHE 1191

[Close]
BLAST of MELO3C033311.2 vs. TrEMBL
Match: tr|A0A1U8AVI1|A0A1U8AVI1_NELNU (DNA repair protein UVH3 isoform X3 OS=Nelumbo nucifera OX=4432 GN=LOC104607918 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.0e-06
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 0 

Query: 3    LCWKKFGWENSKADELVLPVLKEYTKHE 31
            LCW+KFGW N KADEL+LPVLKEY KHE
Sbjct: 1002 LCWEKFGWSNQKADELLLPVLKEYNKHE 1029

[Close]
BLAST of MELO3C033311.2 vs. TrEMBL
Match: tr|A0A1U8AV40|A0A1U8AV40_NELNU (DNA repair protein UVH3 isoform X2 OS=Nelumbo nucifera OX=4432 GN=LOC104607918 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.0e-06
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 0 

Query: 3   LCWKKFGWENSKADELVLPVLKEYTKHE 31
           LCW+KFGW N KADEL+LPVLKEY KHE
Sbjct: 836 LCWEKFGWSNQKADELLLPVLKEYNKHE 863

The following BLAST results are available for this feature:
BLAST of MELO3C033311.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016899699.15.3e-0789.29PREDICTED: LOW QUALITY PROTEIN: DNA repair protein UVH3 [Cucumis melo][more]
XP_022150078.11.2e-0685.71DNA repair protein UVH3 isoform X1 [Momordica charantia][more]
XP_022150080.11.2e-0685.71DNA repair protein UVH3 isoform X2 [Momordica charantia][more]
XP_022150081.11.2e-0685.71DNA repair protein UVH3 isoform X3 [Momordica charantia][more]
XP_004141182.12.0e-0685.71PREDICTED: DNA repair protein UVH3 isoform X1 [Cucumis sativus][more]
BLAST of MELO3C033311.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G28030.11.1e-0667.865'-3' exonuclease family protein[more]
BLAST of MELO3C033311.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9ATY5|UVH3_ARATH2.0e-0567.86DNA repair protein UVH3 OS=Arabidopsis thaliana OX=3702 GN=UVH3 PE=2 SV=1[more]
BLAST of MELO3C033311.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DUP2|A0A1S4DUP2_CUCME3.5e-0789.29LOW QUALITY PROTEIN: DNA repair protein UVH3 OS=Cucumis melo OX=3656 GN=LOC10348... [more]
tr|M7YKN2|M7YKN2_TRIUA1.3e-0654.72DNA repair protein UVH3 OS=Triticum urartu OX=4572 GN=TRIUR3_14056 PE=4 SV=1[more]
tr|A0A0A0LG49|A0A0A0LG49_CUCSA1.3e-0685.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G835790 PE=4 SV=1[more]
tr|A0A1U8AVI1|A0A1U8AVI1_NELNU5.0e-0682.14DNA repair protein UVH3 isoform X3 OS=Nelumbo nucifera OX=4432 GN=LOC104607918 P... [more]
tr|A0A1U8AV40|A0A1U8AV40_NELNU5.0e-0682.14DNA repair protein UVH3 isoform X2 OS=Nelumbo nucifera OX=4432 GN=LOC104607918 P... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
cellular_component GO:0005634 nucleus
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0016788 hydrolase activity, acting on ester bonds
molecular_function GO:0004518 nuclease activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033311.2.1MELO3C033311.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C033311.2Watermelon (97103) v2medwmbB529
MELO3C033311.2Wax gourdmedwgoB653
MELO3C033311.2Cucurbita maxima (Rimu)cmamedB908
MELO3C033311.2Cucurbita moschata (Rifu)cmomedB691
MELO3C033311.2Cucurbita moschata (Rifu)cmomedB898
MELO3C033311.2Cucurbita pepo (Zucchini)cpemedB094
MELO3C033311.2Cucurbita pepo (Zucchini)cpemedB534
MELO3C033311.2Wild cucumber (PI 183967)cpimedB315
MELO3C033311.2Bottle gourd (USVL1VR-Ls)lsimedB161
MELO3C033311.2Watermelon (Charleston Gray)medwcgB525
MELO3C033311.2Watermelon (97103) v1medwmB578
MELO3C033311.2Silver-seed gourdcarmedB0199
MELO3C033311.2Silver-seed gourdcarmedB0299