MELO3C033310.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C033310.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionS locus-related glycoprotein 1 binding pollen coat
Locationchr08 : 18932665 .. 18933154 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTTAACAAAACAATAGTTTCAAAATTTGCATATCTTAAGAATATGGCTTCTTCTCGTATCATCTGCTTTGCTCTTATTTTTTCAGGTTCGTTTCCTTTTATTTCTCCCCCAAATACTATATTATCATGTGTTTCAAAATCCAATAACCATGAGACATATTAGATTGCTAAATTTGTATATTTATCTTTTTATGTTTTTGTATATAGTTGCATTGATCTTGGTACCTCGAGACGTCTCAGCTGCCAAAAGATGTCAAGACGTTTTGTATAACACTGGGTGCTCTCTCAATGACTGTGGAAAGAAATGTTGGGATAAGCATCATACTATTTCATATCAATGCATTCCAACTAATCCTTCTCAAACCATCTATGCTTGTTATTGTTTCTTTGATTGTGGTGATCAAAAGAATTGATTTGCATGTTGACATCTTCCCAATTTTATGTAATGTACTTTGTCACATAAATTTCTAAATAATATCACACATCTTTC

mRNA sequence

ACTTAACAAAACAATAGTTTCAAAATTTGCATATCTTAAGAATATGGCTTCTTCTCGTATCATCTGCTTTGCTCTTATTTTTTCAGTTGCATTGATCTTGGTACCTCGAGACGTCTCAGCTGCCAAAAGATGTCAAGACGTTTTGTATAACACTGGGTGCTCTCTCAATGACTGTGGAAAGAAATGTTGGGATAAGCATCATACTATTTCATATCAATGCATTCCAACTAATCCTTCTCAAACCATCTATGCTTGTTATTGTTTCTTTGATTGTGGTGATCAAAAGAATTGATTTGCATGTTGACATCTTCCCAATTTTATGTAATGTACTTTGTCACATAAATTTCTAAATAATATCACACATCTTTC

Coding sequence (CDS)

ATGGCTTCTTCTCGTATCATCTGCTTTGCTCTTATTTTTTCAGTTGCATTGATCTTGGTACCTCGAGACGTCTCAGCTGCCAAAAGATGTCAAGACGTTTTGTATAACACTGGGTGCTCTCTCAATGACTGTGGAAAGAAATGTTGGGATAAGCATCATACTATTTCATATCAATGCATTCCAACTAATCCTTCTCAAACCATCTATGCTTGTTATTGTTTCTTTGATTGTGGTGATCAAAAGAATTGA

Protein sequence

MASSRIICFALIFSVALILVPRDVSAAKRCQDVLYNTGCSLNDCGKKCWDKHHTISYQCIPTNPSQTIYACYCFFDCGDQKN
Homology
[Close]
BLAST of MELO3C033310.2 vs. NCBI nr
Match: KGN54897.1 (hypothetical protein Csa_4G576870 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 2.2e-36
Identity = 70/82 (85.37%), Postives = 78/82 (95.12%), Query Frame = 0 

Query: 1  MASSRIICFALIFSVALILVPRDVSAAKRCQDVLYNTGCSLNDCGKKCWDKHHTISYQCI 60
          M SSRIICFALIF+VAL+L  +DVSAA+RCQDVLYNTGC+LNDCGKKCW+KHHT+S+QCI
Sbjct: 1  MDSSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCI 60

Query: 61 PTNPSQTIYACYCFFDCGDQKN 83
          PTNPSQTIYACYCFFDCG QKN
Sbjct: 61 PTNPSQTIYACYCFFDCGGQKN 82

[Close]
BLAST of MELO3C033310.2 vs. NCBI nr
Match: KGN64987.1 (hypothetical protein Csa_1G172580 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 2.0e-21
Identity = 48/76 (63.16%), Postives = 60/76 (78.95%), Query Frame = 0 

Query: 3  SSRIICFALIFSVALILVPRDVSAAKRCQDVLYNTGCSLNDCGKKCWDKHHTISYQCIPT 62
          SS I+   LI +VA+I +P+   AA RCQD+LYN+GC+L DCG+KCW+KHH  S QCIPT
Sbjct: 6  SSWILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPT 65

Query: 63 NPSQTIYACYCFFDCG 79
          +P QTIYACYCF+ CG
Sbjct: 66 DPDQTIYACYCFYTCG 80

[Close]
BLAST of MELO3C033310.2 vs. NCBI nr
Match: KGN54810.1 (hypothetical protein Csa_4G507400 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 6.6e-12
Identity = 37/77 (48.05%), Postives = 54/77 (70.13%), Query Frame = 0 

Query: 1  MASSRIICFALIFSVALILVPRDVSAAKRCQDVLYNTGCSLNDCGKKCWDKHHTISYQCI 60
          ++S R+    +IF+V++ILVP+  SA K CQD LY  GC  ++CG+KC   HH  + +CI
Sbjct: 21 LSSFRVAIIIVIFAVSMILVPQGTSALK-CQDRLYVGGCIQHECGQKCSQLHHGGTSKCI 80

Query: 61 PTNPSQTIYACYCFFDC 78
           T+P+ T YACYCF++C
Sbjct: 81 STDPTFTKYACYCFYNC 96

[Close]
BLAST of MELO3C033310.2 vs. NCBI nr
Match: XP_018498384.1 (PREDICTED: putative defensin-like protein 165 [Pyrus x bretschneideri])

HSP 1 Score: 73.9 bits (180), Expect = 2.8e-10
Identity = 37/72 (51.39%), Postives = 48/72 (66.67%), Query Frame = 0 

Query: 7  ICFALIFSVALILVP-RDVSAAKRCQDVLYNTGCSLNDCGKKCWDKHHTISYQCIPTNPS 66
          I   LIFSVAL     R   A KRCQ++LY + C+L DCG+KC++KHH   + CI  NP+
Sbjct: 10 ILLVLIFSVALKCGNLRQTYAQKRCQELLYPSNCTLLDCGEKCFNKHHDQGHTCI-ANPA 69

Query: 67 QTIYACYCFFDC 78
           T YACYC ++C
Sbjct: 70 GTDYACYCIYNC 80

[Close]
BLAST of MELO3C033310.2 vs. NCBI nr
Match: OMO95288.1 (S locus-related glycoprotein 1 binding pollen coat [Corchorus olitorius])

HSP 1 Score: 73.9 bits (180), Expect = 2.8e-10
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 0 

Query: 20 VPRDVSAAKRCQDVLYNTGCSLNDCGKKCWDKHHTISYQCIPTNPSQTIYACYCFFDC 78
          V     A KRCQ +LY  GC+L DC KKC+ K  +I  QCIPTN +QTIY C C ++C
Sbjct: 26 VAAQADAQKRCQKILYPKGCTLMDCRKKCFQKFGSIGGQCIPTNQAQTIYECLCVYNC 83

[Close]
BLAST of MELO3C033310.2 vs. TrEMBL
Match: tr|A0A0A0L2R3|A0A0A0L2R3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.5e-36
Identity = 70/82 (85.37%), Postives = 78/82 (95.12%), Query Frame = 0 

Query: 1  MASSRIICFALIFSVALILVPRDVSAAKRCQDVLYNTGCSLNDCGKKCWDKHHTISYQCI 60
          M SSRIICFALIF+VAL+L  +DVSAA+RCQDVLYNTGC+LNDCGKKCW+KHHT+S+QCI
Sbjct: 1  MDSSRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCI 60

Query: 61 PTNPSQTIYACYCFFDCGDQKN 83
          PTNPSQTIYACYCFFDCG QKN
Sbjct: 61 PTNPSQTIYACYCFFDCGGQKN 82

[Close]
BLAST of MELO3C033310.2 vs. TrEMBL
Match: tr|A0A0A0LVZ5|A0A0A0LVZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-21
Identity = 48/76 (63.16%), Postives = 60/76 (78.95%), Query Frame = 0 

Query: 3  SSRIICFALIFSVALILVPRDVSAAKRCQDVLYNTGCSLNDCGKKCWDKHHTISYQCIPT 62
          SS I+   LI +VA+I +P+   AA RCQD+LYN+GC+L DCG+KCW+KHH  S QCIPT
Sbjct: 6  SSWILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPT 65

Query: 63 NPSQTIYACYCFFDCG 79
          +P QTIYACYCF+ CG
Sbjct: 66 DPDQTIYACYCFYTCG 80

[Close]
BLAST of MELO3C033310.2 vs. TrEMBL
Match: tr|A0A0A0KYP7|A0A0A0KYP7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.4e-12
Identity = 37/77 (48.05%), Postives = 54/77 (70.13%), Query Frame = 0 

Query: 1  MASSRIICFALIFSVALILVPRDVSAAKRCQDVLYNTGCSLNDCGKKCWDKHHTISYQCI 60
          ++S R+    +IF+V++ILVP+  SA K CQD LY  GC  ++CG+KC   HH  + +CI
Sbjct: 21 LSSFRVAIIIVIFAVSMILVPQGTSALK-CQDRLYVGGCIQHECGQKCSQLHHGGTSKCI 80

Query: 61 PTNPSQTIYACYCFFDC 78
           T+P+ T YACYCF++C
Sbjct: 81 STDPTFTKYACYCFYNC 96

[Close]
BLAST of MELO3C033310.2 vs. TrEMBL
Match: tr|A0A1R3JKF5|A0A1R3JKF5_9ROSI (S locus-related glycoprotein 1 binding pollen coat OS=Corchorus olitorius OX=93759 GN=COLO4_16008 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.8e-10
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 0 

Query: 20 VPRDVSAAKRCQDVLYNTGCSLNDCGKKCWDKHHTISYQCIPTNPSQTIYACYCFFDC 78
          V     A KRCQ +LY  GC+L DC KKC+ K  +I  QCIPTN +QTIY C C ++C
Sbjct: 26 VAAQADAQKRCQKILYPKGCTLMDCRKKCFQKFGSIGGQCIPTNQAQTIYECLCVYNC 83

[Close]
BLAST of MELO3C033310.2 vs. TrEMBL
Match: tr|A0A1R3G6W7|A0A1R3G6W7_COCAP (S locus-related glycoprotein 1 binding pollen coat OS=Corchorus capsularis OX=210143 GN=CCACVL1_28320 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 0 

Query: 28 KRCQDVLYNTGCSLNDCGKKCWDKHHTISYQCIPTNPSQTIYACYCFFDC 78
          KRCQ +LY  GC+L DC KKC+ K  ++  QCIPTN +QTIY C C ++C
Sbjct: 33 KRCQKILYPRGCTLMDCRKKCFQKFGSVGGQCIPTNQAQTIYECLCVYNC 82

The following BLAST results are available for this feature:
BLAST of MELO3C033310.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54897.12.2e-3685.37hypothetical protein Csa_4G576870 [Cucumis sativus][more]
KGN64987.12.0e-2163.16hypothetical protein Csa_1G172580 [Cucumis sativus][more]
KGN54810.16.6e-1248.05hypothetical protein Csa_4G507400 [Cucumis sativus][more]
XP_018498384.12.8e-1051.39PREDICTED: putative defensin-like protein 165 [Pyrus x bretschneideri][more]
OMO95288.12.8e-1053.45S locus-related glycoprotein 1 binding pollen coat [Corchorus olitorius][more]
BLAST of MELO3C033310.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C033310.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C033310.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L2R3|A0A0A0L2R3_CUCSA1.5e-3685.37Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=4 SV=1[more]
tr|A0A0A0LVZ5|A0A0A0LVZ5_CUCSA1.3e-2163.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=4 SV=1[more]
tr|A0A0A0KYP7|A0A0A0KYP7_CUCSA4.4e-1248.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=4 SV=1[more]
tr|A0A1R3JKF5|A0A1R3JKF5_9ROSI1.8e-1053.45S locus-related glycoprotein 1 binding pollen coat OS=Corchorus olitorius OX=937... [more]
tr|A0A1R3G6W7|A0A1R3G6W7_COCAP1.2e-0956.00S locus-related glycoprotein 1 binding pollen coat OS=Corchorus capsularis OX=21... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010851SLR1_pollen-bd
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033310.2.1MELO3C033310.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010851S locus-related glycoprotein 1 binding pollen coat proteinPFAMPF07333SLR1-BPcoord: 26..77
e-value: 3.0E-6
score: 27.5

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C033310.2Cucurbita maxima (Rimu)cmamedB908
MELO3C033310.2Cucurbita moschata (Rifu)cmomedB691
MELO3C033310.2Cucurbita moschata (Rifu)cmomedB898
MELO3C033310.2Cucurbita pepo (Zucchini)cpemedB094
MELO3C033310.2Cucurbita pepo (Zucchini)cpemedB534
MELO3C033310.2Wild cucumber (PI 183967)cpimedB315
MELO3C033310.2Bottle gourd (USVL1VR-Ls)lsimedB161
MELO3C033310.2Watermelon (Charleston Gray)medwcgB525
MELO3C033310.2Watermelon (97103) v1medwmB578
MELO3C033310.2Silver-seed gourdcarmedB0199
MELO3C033310.2Silver-seed gourdcarmedB0299
MELO3C033310.2Watermelon (97103) v2medwmbB529
MELO3C033310.2Wax gourdmedwgoB653