MELO3C033303.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C033303.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Auxin response factor
Location	chr08 : 18519556 .. 18520439 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTCTTAGCTTTTTCCCTCTCTCTTTCTTTCTTTTGTGGCTTGTCCTTTGATTGATCGGTAGATGGGGTAGCAGTAGCACGATAGTTTACCATTCTTTCAGACTGTGAAAAACATAGCAAGAGAGAGAGAGAGAGAGAGAAGAGAGACCCTATTTTCTCCTCTTCTTCTTTGGTTTCTCTTGTTGTTCTTCAATCTTTGGCATTTTAGACTGAGACCCATTTTTTCAATTTGGATGACACTTTACGAAGAGAATCCAAGGGAGTCTCACGAAGGTGAAACCCAGTTGAATATCTCTATTTTTTTCAAATTTGGTGTTTATCAAAACACCCAAAGGACTTTGAAATTTCGAGGTGTTTTTGGAGTGTTTGATTGATTTTGTTTGGTGGGTAGGTTTGGAAGGTGAGGATCTGTATGAGGAGCTGTGTAAGGCATGTGCAGGACCTCTTGTTGAAGTTTCTATCGATGGAGAAAGGGTTTTTTACTTCCCGCAGGGTCATATGGAATAAGTATTTTGCCATCTCTTTTTCAATTTCACCCTTGAAACAAAAAGCCCTCATAATCTTAGAGGCTGAAATTTCTTCTGCTTTTTGGTTCTTCATCAATTGGAAGAGTCCACAAATCAGGAGCTTATTCACCAAATCCCTCACTTTGATCTCCCTCCCAAGATCCTATATCATGTTGTTAACATTTGTTTGCTGGTATTTCTTATTTTCTCTTTTGTTCATGTACACTCGCCTACTTTGTTTCTGTTGATTCTTCAGGTTCGTTTTCTTCTTTTGATTTCAATTTTTCAGGCTGAAAAGGAAATGGATGAAGTCTATGCTCAAATCACTTTATACCCAGAGGCTGATGTATGCATATATTTTTACTTCTTAGCGTTAA

mRNA sequence

TTTTCTTAGCTTTTTCCCTCTCTCTTTCTTTCTTTTGTGGCTTGTCCTTTGATTGATCGGTAGATGGGGTAGCAGTAGCACGATAGTTTACCATTCTTTCAGACTGTGAAAAACATAGCAAGAGAGAGAGAGAGAGAGAGAAGAGAGACCCTATTTTCTCCTCTTCTTCTTTGGTTTCTCTTGTTGTTCTTCAATCTTTGGCATTTTAGACTGAGACCCATTTTTTCAATTTGGATGACACTTTACGAAGAGAATCCAAGGGAGTCTCACGAAGGTTTGGAAGGTGAGGATCTGTATGAGGAGCTGTGTAAGGCATGTGCAGGACCTCTTGTTGAAGTTTCTATCGATGGAGAAAGGGCTGAAAAGGAAATGGATGAAGTCTATGCTCAAATCACTTTATACCCAGAGGCTGATCGTTAA

Coding sequence (CDS)

ATGACACTTTACGAAGAGAATCCAAGGGAGTCTCACGAAGGTTTGGAAGGTGAGGATCTGTATGAGGAGCTGTGTAAGGCATGTGCAGGACCTCTTGTTGAAGTTTCTATCGATGGAGAAAGGGCTGAAAAGGAAATGGATGAAGTCTATGCTCAAATCACTTTATACCCAGAGGCTGATCGTTAA

Protein sequence

MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGERAEKEMDEVYAQITLYPEADR

Homology

[Close]

BLAST of MELO3C033303.2 vs. NCBI nr
Match: XP_004139643.1 (PREDICTED: auxin response factor 18 isoform X1 [Cucumis sativus] >KGN44547.1 hypothetical protein Csa_7G329330 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 3.6e-15
Identity = 53/104 (50.96%), Postives = 56/104 (53.85%), Query Frame = 0


Query: 1   MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGER------------------- 60
           MTLYEENP ES +GLEGEDLYEEL KACAGPLVEV +DGER                   
Sbjct: 1   MTLYEENPGESRKGLEGEDLYEELWKACAGPLVEVPVDGERVFYFPQGHMEQLEESTNQE 60

Query: 61  ------------------------AEKEMDEVYAQITLYPEADR 62
                                   AEKE DEVYAQITLYPEAD+
Sbjct: 61  LNHQIPHFDLPPKILCRVVNIRLLAEKETDEVYAQITLYPEADQ 104

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BLAST of MELO3C033303.2 vs. NCBI nr
Match: XP_011659155.1 (PREDICTED: auxin response factor 18 isoform X2 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 3.6e-15
Identity = 53/104 (50.96%), Postives = 56/104 (53.85%), Query Frame = 0


Query: 1   MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGER------------------- 60
           MTLYEENP ES +GLEGEDLYEEL KACAGPLVEV +DGER                   
Sbjct: 1   MTLYEENPGESRKGLEGEDLYEELWKACAGPLVEVPVDGERVFYFPQGHMEQLEESTNQE 60

Query: 61  ------------------------AEKEMDEVYAQITLYPEADR 62
                                   AEKE DEVYAQITLYPEAD+
Sbjct: 61  LNHQIPHFDLPPKILCRVVNIRLLAEKETDEVYAQITLYPEADQ 104

[Close]

BLAST of MELO3C033303.2 vs. NCBI nr
Match: XP_016902758.1 (PREDICTED: auxin response factor 11-like [Cucumis melo])

HSP 1 Score: 89.4 bits (220), Expect = 4.7e-15
Identity = 53/103 (51.46%), Postives = 55/103 (53.40%), Query Frame = 0


Query: 1   MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGER------------------- 60
           MTLYEE P ESH+GLEGEDLYEEL KACAGPLVEV IDGER                   
Sbjct: 1   MTLYEEKPGESHKGLEGEDLYEELWKACAGPLVEVPIDGERVFYFPQSHMEQLEESTNQE 60

[Close]

BLAST of MELO3C033303.2 vs. NCBI nr
Match: XP_023004951.1 (auxin response factor 18-like [Cucurbita maxima])

HSP 1 Score: 75.9 bits (185), Expect = 5.4e-11
Identity = 47/104 (45.19%), Postives = 52/104 (50.00%), Query Frame = 0


Query: 1   MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGER------------------- 60
           MTL E+NP E H+GLEGE L+EEL KACAGPLVEV  +GER                   
Sbjct: 1   MTLSEQNPAEFHKGLEGEGLFEELWKACAGPLVEVPFNGERVFYFPQGHMEQLEESTNHE 60

Query: 61  ------------------------AEKEMDEVYAQITLYPEADR 62
                                   AEKE DEVYAQITL PEAD+
Sbjct: 61  LNHQIPHFDLPSKILCRVVNIRLLAEKETDEVYAQITLQPEADQ 104

[Close]

BLAST of MELO3C033303.2 vs. NCBI nr
Match: XP_008467007.2 (PREDICTED: auxin response factor 11, partial [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 9.2e-11
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGER 42
          MTLYEENP ES +GLEGEDLYEEL KACAGPLVEV +DGER
Sbjct: 1  MTLYEENPGESRKGLEGEDLYEELWKACAGPLVEVPVDGER 41

[Close]

BLAST of MELO3C033303.2 vs. TAIR10
Match: AT2G46530.3 (auxin response factor 11)

HSP 1 Score: 44.3 bits (103), Expect = 3.2e-05
Identity = 33/92 (35.87%), Postives = 36/92 (39.13%), Query Frame = 0


Query: 14  GLEGEDLYEELCKACAGPLVEVSIDGER-------------------------------- 62
           G   ++LY EL KACAGPLVEV   GER                                
Sbjct: 33  GSNDDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPP 92

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BLAST of MELO3C033303.2 vs. Swiss-Prot
Match: sp|Q9ZPY6|ARFK_ARATH (Auxin response factor 11 OS=Arabidopsis thaliana OX=3702 GN=ARF11 PE=2 SV=3)

HSP 1 Score: 44.3 bits (103), Expect = 5.7e-04
Identity = 33/92 (35.87%), Postives = 36/92 (39.13%), Query Frame = 0


Query: 14  GLEGEDLYEELCKACAGPLVEVSIDGER-------------------------------- 62
           G   ++LY EL KACAGPLVEV   GER                                
Sbjct: 33  GSNDDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPP 92

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BLAST of MELO3C033303.2 vs. TrEMBL
Match: tr|A0A0A0K887|A0A0A0K887_CUCSA (Auxin response factor OS=Cucumis sativus OX=3659 GN=Csa_7G329330 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.4e-15
Identity = 53/104 (50.96%), Postives = 56/104 (53.85%), Query Frame = 0


Query: 1   MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGER------------------- 60
           MTLYEENP ES +GLEGEDLYEEL KACAGPLVEV +DGER                   
Sbjct: 1   MTLYEENPGESRKGLEGEDLYEELWKACAGPLVEVPVDGERVFYFPQGHMEQLEESTNQE 60

Query: 61  ------------------------AEKEMDEVYAQITLYPEADR 62
                                   AEKE DEVYAQITLYPEAD+
Sbjct: 61  LNHQIPHFDLPPKILCRVVNIRLLAEKETDEVYAQITLYPEADQ 104

[Close]

BLAST of MELO3C033303.2 vs. TrEMBL
Match: tr|A0A1S4E3F7|A0A1S4E3F7_CUCME (auxin response factor 11-like OS=Cucumis melo OX=3656 GN=LOC103500375 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.1e-15
Identity = 53/103 (51.46%), Postives = 55/103 (53.40%), Query Frame = 0


Query: 1   MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGER------------------- 60
           MTLYEE P ESH+GLEGEDLYEEL KACAGPLVEV IDGER                   
Sbjct: 1   MTLYEEKPGESHKGLEGEDLYEELWKACAGPLVEVPIDGERVFYFPQSHMEQLEESTNQE 60

[Close]

BLAST of MELO3C033303.2 vs. TrEMBL
Match: tr|A0A1S3CSJ1|A0A1S3CSJ1_CUCME (auxin response factor 11 OS=Cucumis melo OX=3656 GN=LOC103504421 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.1e-11
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  MTLYEENPRESHEGLEGEDLYEELCKACAGPLVEVSIDGER 42
          MTLYEENP ES +GLEGEDLYEEL KACAGPLVEV +DGER
Sbjct: 1  MTLYEENPGESRKGLEGEDLYEELWKACAGPLVEVPVDGER 41

[Close]

BLAST of MELO3C033303.2 vs. TrEMBL
Match: tr|A0A067K091|A0A067K091_JATCU (Auxin response factor OS=Jatropha curcas OX=180498 GN=JCGZ_14244 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.5e-05
Identity = 41/107 (38.32%), Postives = 45/107 (42.06%), Query Frame = 0


Query: 1   MTLYEENPRE---SHEGLEGEDLYEELCKACAGPLVEVSIDGER---------------- 60
           M   E NPR    SH    G+DLY EL KACAGPLVEV   GER                
Sbjct: 1   MAHVESNPRGGSISHGERGGDDLYTELWKACAGPLVEVPRPGERVFYFPQGHMEQLEAST 60

Query: 61  ---------------------------AEKEMDEVYAQITLYPEADR 62
                                      AE+E DEVYAQITL+PE D+
Sbjct: 61  NQELTQQIPRFNLPSKILCRVVHIQLLAEQETDEVYAQITLHPEPDQ 107

[Close]

BLAST of MELO3C033303.2 vs. TrEMBL
Match: tr|A0A172CDD9|A0A172CDD9_POPTO (Auxin response factor OS=Populus tomentosa OX=118781 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.2e-04
Identity = 33/81 (40.74%), Postives = 39/81 (48.15%), Query Frame = 0


Query: 18 EDLYEELCKACAGPLVEVSIDGER------------------------------------ 62
          +DLY EL KACAGPLV+V  DGER                                    
Sbjct: 9  DDLYTELWKACAGPLVDVPKDGERVFYFPQGHMEQLEASTNQELNQQIPRFNLPPKILCR 68

The following BLAST results are available for this feature:

BLAST of MELO3C033303.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139643.1	3.6e-15	50.96	PREDICTED: auxin response factor 18 isoform X1 [Cucumis sativus] >KGN44547.1 hyp...	[more]
XP_011659155.1	3.6e-15	50.96	PREDICTED: auxin response factor 18 isoform X2 [Cucumis sativus]	[more]
XP_016902758.1	4.7e-15	51.46	PREDICTED: auxin response factor 11-like [Cucumis melo]	[more]
XP_023004951.1	5.4e-11	45.19	auxin response factor 18-like [Cucurbita maxima]	[more]
XP_008467007.2	9.2e-11	85.37	PREDICTED: auxin response factor 11, partial [Cucumis melo]	[more]

BLAST of MELO3C033303.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46530.3	3.2e-05	35.87	auxin response factor 11	[more]

BLAST of MELO3C033303.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZPY6\|ARFK_ARATH	5.7e-04	35.87	Auxin response factor 11 OS=Arabidopsis thaliana OX=3702 GN=ARF11 PE=2 SV=3	[more]

BLAST of MELO3C033303.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K887\|A0A0A0K887_CUCSA	2.4e-15	50.96	Auxin response factor OS=Cucumis sativus OX=3659 GN=Csa_7G329330 PE=3 SV=1	[more]
tr\|A0A1S4E3F7\|A0A1S4E3F7_CUCME	3.1e-15	51.46	auxin response factor 11-like OS=Cucumis melo OX=3656 GN=LOC103500375 PE=4 SV=1	[more]
tr\|A0A1S3CSJ1\|A0A1S3CSJ1_CUCME	6.1e-11	85.37	auxin response factor 11 OS=Cucumis melo OX=3656 GN=LOC103504421 PE=4 SV=1	[more]
tr\|A0A067K091\|A0A067K091_JATCU	8.5e-05	38.32	Auxin response factor OS=Jatropha curcas OX=180498 GN=JCGZ_14244 PE=3 SV=1	[more]
tr\|A0A172CDD9\|A0A172CDD9_POPTO	4.2e-04	40.74	Auxin response factor OS=Populus tomentosa OX=118781 PE=2 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009725	response to hormone
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033303.2.1	MELO3C033303.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C033303.2	Cucumber (Gy14) v2	cgybmedB281
MELO3C033303.2	Cucumber (Gy14) v1	cgymedB282
MELO3C033303.2	Cucurbita maxima (Rimu)	cmamedB908
MELO3C033303.2	Cucurbita moschata (Rifu)	cmomedB691
MELO3C033303.2	Cucurbita moschata (Rifu)	cmomedB898
MELO3C033303.2	Cucurbita pepo (Zucchini)	cpemedB094
MELO3C033303.2	Cucurbita pepo (Zucchini)	cpemedB534
MELO3C033303.2	Wild cucumber (PI 183967)	cpimedB315
MELO3C033303.2	Cucumber (Chinese Long) v2	cumedB313
MELO3C033303.2	Bottle gourd (USVL1VR-Ls)	lsimedB161
MELO3C033303.2	Silver-seed gourd	carmedB0199
MELO3C033303.2	Silver-seed gourd	carmedB0299
MELO3C033303.2	Cucumber (Chinese Long) v3	cucmedB322
MELO3C033303.2	Wax gourd	medwgoB653