MELO3C033302.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C033302.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionLOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like
Locationchr08 : 18419786 .. 18421018 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTACATAAGGTACTATCCTACATGTGTTCGTATCTGCTTATTGAATGTTTGTTTTTTATGTCCACAGGCATTATGTCATACACACGTAATAATTTTCTGAAGACGGATACTATGTTCCTTGAGTTTAAGGATGATTTAGATAACCTTGCGGGAGGGTCATCGTCCGTGGGCGATAATGCGGGTGAGTCTAAGAATTTCATTCATTTTAACTTAGGATTATTTCATGTTTTTTTCTCTAACATTATATGTTATTATAATTTATTGAGCAGGGTCGTCTTCTCAACCACCTGCGACTCCGACTCCTAGGAGACGTGCGCAGTCTCGACTCTTAGTGTTGGAGCGCCACGTTGTTGTCAATGGGCGTATTTCGATGACGATTGCCCCTAGAGAGGAGAAGTCTACTTTCTCACACGCCGTTCGCTTCAGCCAGGTAATAGGCATGTGCGTGCGAAAGATATTTTCTGTCCGCTACTTTAAATGAGCAGACGTTGGCATAGAATACATTGAGGTCGTCAAGGGTGACCTCTAGGTAATTAAGTCCACTAAATATTTATGATTTCATTTGAAATATATCTAAGTTAACCAATCTAATGTGTTATTTTTGTAATGTGTAGTGGTTTTTTGTGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTAAGCATCAGATGCTCACCACCTTTAAGGAGTTTCGGGGCGATTGTCAGTCCTTTAAAAAGTACAGCGACCTCGAGGAGGCTCGTGCCAACCCACCAAACGTATTGGTTAGACGTCATGAGGATTAACACTTCCTCTGCGACCGCTACATGAGTCATGCATTCCAGGTATTTGTCATGCTTAATTATGATTTCAACTTTTAATATGTATAAGAAATAAACAATATTATTATTTTCATGCAAGAGCAATCACGGACGGACAAGGTTGCTAGATAGAAGCAGCCTTACAATCATAGTAGCGGGTCAAAGTTGTTTCTACAACGACAGCACAAGCTCGCTGAGAAAAAAGGGGAACTGATCGACCATGTGGAGTTGTTTCAAAAAACACATGTTTGAGCCGGGACGTTCGTGTCGCAGGCCACAAAGGATGCGCATGTAAGTTATTGATCCAACTCTTGTGTCCTTATTAATTATCCTCTTTCATTATATATTTTTGCGTTACCTAACTTAGTTTTTAAATTTGTTGCAGAATCAAATGCTGAAACTCTAGTCCCAGCCTACCCTAGAGGGTAG

mRNA sequence

TCTACATAAGGTACTATCCTACATGTGTTCGTATCTGCTTATTGAATGTTTGTTTTTTATGTCCACAGGCATTATGTCATACACACGTAATAATTTTCTGAAGACGGATACTATGTTCCTTGAGTTTAAGGATGATTTAGATAACCTTGCGGGAGGGTCATCGTCCGTGGGCGATAATGCGGGGTCGTCTTCTCAACCACCTGCGACTCCGACTCCTAGGAGACGTGCGCAGTCTCGACTCTTAGTGTTGGAGCGCCACGTTGTTGTCAATGGGCGTATTTCGATGACGATTGCCCCTAGAGAGGAGAAGTCTACTTTCTCACACGCCGTTCGCTTCAGCCAGTGGTTTTTTGTGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTAAGCATCAGATGCTCACCACCTTTAAGGAGTTTCGGGGCGATTGTCAGTCCTTTAAAAAGTACAGCGACCTCGAGGAGGCTCGTGCCAACCCACCAAACGTATTGAGCAATCACGGACGGACAAGGTTGCTAGATAGAAGCAGCCTTACAATCATAGTAGCGGAATCAAATGCTGAAACTCTAGTCCCAGCCTACCCTAGAGGGTAG

Coding sequence (CDS)

ATGTGTTCGTATCTGCTTATTGAATGTTTGTTTTTTATGTCCACAGGCATTATGTCATACACACGTAATAATTTTCTGAAGACGGATACTATGTTCCTTGAGTTTAAGGATGATTTAGATAACCTTGCGGGAGGGTCATCGTCCGTGGGCGATAATGCGGGGTCGTCTTCTCAACCACCTGCGACTCCGACTCCTAGGAGACGTGCGCAGTCTCGACTCTTAGTGTTGGAGCGCCACGTTGTTGTCAATGGGCGTATTTCGATGACGATTGCCCCTAGAGAGGAGAAGTCTACTTTCTCACACGCCGTTCGCTTCAGCCAGTGGTTTTTTGTGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTAAGCATCAGATGCTCACCACCTTTAAGGAGTTTCGGGGCGATTGTCAGTCCTTTAAAAAGTACAGCGACCTCGAGGAGGCTCGTGCCAACCCACCAAACGTATTGAGCAATCACGGACGGACAAGGTTGCTAGATAGAAGCAGCCTTACAATCATAGTAGCGGAATCAAATGCTGAAACTCTAGTCCCAGCCTACCCTAGAGGGTAG

Protein sequence

MCSYLLIECLFFMSTGIMSYTRNNFLKTDTMFLEFKDDLDNLAGGSSSVGDNAGSSSQPPATPTPRRRAQSRLLVLERHVVVNGRISMTIAPREEKSTFSHAVRFSQWFFVLDFNDQAMNRFVKHQMLTTFKEFRGDCQSFKKYSDLEEARANPPNVLSNHGRTRLLDRSSLTIIVAESNAETLVPAYPRG
Homology
[Close]
BLAST of MELO3C033302.2 vs. NCBI nr
Match: XP_016901035.1 (PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo])

HSP 1 Score: 185.3 bits (469), Expect = 2.0e-43
Identity = 107/174 (61.49%), Postives = 115/174 (66.09%), Query Frame = 0 

Query: 18  MSYTRNNFLKTDTMFLEFKDDLDNLAGGSSSVGDNAGSSSQPPATPTPRRRAQSRLLVLE 77
           M Y RNNFL+TD MFLEF+DDLDNLAGGSSSVGDNAGSSSQPPAT TPRRR QSRLL LE
Sbjct: 1   MPYARNNFLETDVMFLEFEDDLDNLAGGSSSVGDNAGSSSQPPATQTPRRRVQSRLLELE 60

Query: 78  RHVVVNGRISMTIAPREEKSTFSHAVRFSQ----------------W------------- 137
            HVVV G I M IAP  E   F +A+RFSQ                W             
Sbjct: 61  CHVVVYGCIPMMIAPGAEMPIFPYAIRFSQAIGVCVQKTFFVCYLKWADIDREYIEVVKG 120

Query: 138 ----FFVLDFNDQAMNRFVKHQMLTTFKEFRGDCQSFKKYSDLEEARANPPNVL 159
               FFVLDFNDQA+NRFV+HQMLTTFKEF GDC     +   +EARANPPNVL
Sbjct: 121 NLQRFFVLDFNDQAINRFVEHQMLTTFKEFWGDC-----HRHFKEARANPPNVL 169

[Close]
BLAST of MELO3C033302.2 vs. NCBI nr
Match: ADN34071.1 (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 174.5 bits (441), Expect = 3.5e-40
Identity = 102/167 (61.08%), Postives = 113/167 (67.66%), Query Frame = 0 

Query: 26  LKTDTMFLEFKDDLDNLAGGSSSVGDNAGSSSQPPATPTPRRRAQSRLLVLERHVVVNGR 85
           ++TD MFL+F+DDLDN+AGGSSSVGDN  SSSQ  ATPTPRRRAQSRLL LERHV +NG 
Sbjct: 1   METDDMFLQFEDDLDNIAGGSSSVGDNTESSSQ-QATPTPRRRAQSRLLELERHVAINGC 60

Query: 86  ISMTIAPREEKSTFSHAVRFSQ----------------W-----------------FFVL 145
           I MTIAP  EK    +AV FSQ                W                 FFVL
Sbjct: 61  IPMTIAPGAEKPISPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQRFFVL 120

Query: 146 DFNDQAMNRFVKHQMLTTFKEFRGDC-QSFKKYSDLEEARANPPNVL 159
           DFNDQAMNRFV+HQM+TTFKEF+ DC + FKKYSD EEARANPPN L
Sbjct: 121 DFNDQAMNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNAL 166

[Close]
BLAST of MELO3C033302.2 vs. NCBI nr
Match: XP_016901155.1 (PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like [Cucumis melo])

HSP 1 Score: 144.4 bits (363), Expect = 3.9e-31
Identity = 88/155 (56.77%), Postives = 106/155 (68.39%), Query Frame = 0 

Query: 5   LLIECLFFMSTGIMSYTRNNFLKTDTMFLEFKDDLDNLAGGSSSVGDNAGSSSQPPATPT 64
           LL+E  F + + I S+ RNNFL+TD MFL+F  DLDNLAGGSSS+ +N+ SSSQP AT T
Sbjct: 41  LLLE--FSVISTISSFPRNNFLETDVMFLKFAGDLDNLAGGSSSMDENSESSSQPSATLT 100

Query: 65  PRRRAQSRLLVLERHVVVNGRISMTIAPREEKSTFSHAVRFSQWFFVLDFNDQAMNRFVK 124
           P+R  QSRLL LE +  V GR             +   V+    FFVLDF+DQAMN  V+
Sbjct: 101 PKRHTQSRLLELECY--VTGR------------EYIEVVKADLQFFVLDFSDQAMNTSVE 160

Query: 125 HQMLTTFKEFRGDC-QSFKKYSDLEEARANPPNVL 159
           +QM  TFKEF GDC + FKKYSD EEARANPPN+L
Sbjct: 161 YQMSNTFKEFWGDCHKQFKKYSDPEEARANPPNLL 179

[Close]
BLAST of MELO3C033302.2 vs. NCBI nr
Match: XP_016902990.1 (PREDICTED: uncharacterized protein LOC107991989 [Cucumis melo])

HSP 1 Score: 86.7 bits (213), Expect = 9.6e-14
Identity = 45/60 (75.00%), Postives = 48/60 (80.00%), Query Frame = 0 

Query: 19 SYTRNNFLKTDTMFLEFKDDLDNLAGGSSSVGDNAGSSSQPPATPTPRRRAQSRLLVLER 78
          SY R+NFL+TDTMFLEF+D LDN  GGSSSVGDN GSSSQ P T TPRR  QSRLL L R
Sbjct: 4  SYPRHNFLETDTMFLEFEDQLDNFTGGSSSVGDNVGSSSQQPGTLTPRRHVQSRLLGLLR 63

[Close]
BLAST of MELO3C033302.2 vs. NCBI nr
Match: XP_011648549.1 (PREDICTED: (R)-mandelonitrile lyase 1-like [Cucumis sativus])

HSP 1 Score: 57.4 bits (137), Expect = 6.2e-05
Identity = 50/143 (34.97%), Postives = 69/143 (48.25%), Query Frame = 0 

Query: 15  TGIMSYTRNNFLKTDTMFLEFKDDLDNLAGGSSSVGDNAGSSSQPPATPTPRRRAQSRLL 74
           +GIMS+     ++   ++L   D LDN A G S VG+ +  +SQ   T T RRR  SR L
Sbjct: 683 SGIMSFPSG--IREGDVYLNL-DTLDN-AEGLSLVGETS-DASQFTLTATLRRRQHSRNL 742

Query: 75  VLERHVVVNGRISMTIAPREEKSTFSHAVRFS---------------------------- 128
            LER+++ NG+I ++I    +K    H +RFS                            
Sbjct: 743 ELERYILQNGKILISIPLEGDKPISPHPIRFSCTIDVLTRDTFPIQILKWVDVPQEYIEV 802

[Close]
BLAST of MELO3C033302.2 vs. TrEMBL
Match: tr|A0A1S4DZ93|A0A1S4DZ93_CUCME (uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.3e-43
Identity = 107/174 (61.49%), Postives = 115/174 (66.09%), Query Frame = 0 

Query: 18  MSYTRNNFLKTDTMFLEFKDDLDNLAGGSSSVGDNAGSSSQPPATPTPRRRAQSRLLVLE 77
           M Y RNNFL+TD MFLEF+DDLDNLAGGSSSVGDNAGSSSQPPAT TPRRR QSRLL LE
Sbjct: 1   MPYARNNFLETDVMFLEFEDDLDNLAGGSSSVGDNAGSSSQPPATQTPRRRVQSRLLELE 60

Query: 78  RHVVVNGRISMTIAPREEKSTFSHAVRFSQ----------------W------------- 137
            HVVV G I M IAP  E   F +A+RFSQ                W             
Sbjct: 61  CHVVVYGCIPMMIAPGAEMPIFPYAIRFSQAIGVCVQKTFFVCYLKWADIDREYIEVVKG 120

Query: 138 ----FFVLDFNDQAMNRFVKHQMLTTFKEFRGDCQSFKKYSDLEEARANPPNVL 159
               FFVLDFNDQA+NRFV+HQMLTTFKEF GDC     +   +EARANPPNVL
Sbjct: 121 NLQRFFVLDFNDQAINRFVEHQMLTTFKEFWGDC-----HRHFKEARANPPNVL 169

[Close]
BLAST of MELO3C033302.2 vs. TrEMBL
Match: tr|E5GC72|E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.3e-40
Identity = 102/167 (61.08%), Postives = 113/167 (67.66%), Query Frame = 0 

Query: 26  LKTDTMFLEFKDDLDNLAGGSSSVGDNAGSSSQPPATPTPRRRAQSRLLVLERHVVVNGR 85
           ++TD MFL+F+DDLDN+AGGSSSVGDN  SSSQ  ATPTPRRRAQSRLL LERHV +NG 
Sbjct: 1   METDDMFLQFEDDLDNIAGGSSSVGDNTESSSQ-QATPTPRRRAQSRLLELERHVAINGC 60

Query: 86  ISMTIAPREEKSTFSHAVRFSQ----------------W-----------------FFVL 145
           I MTIAP  EK    +AV FSQ                W                 FFVL
Sbjct: 61  IPMTIAPGAEKPISPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQRFFVL 120

Query: 146 DFNDQAMNRFVKHQMLTTFKEFRGDC-QSFKKYSDLEEARANPPNVL 159
           DFNDQAMNRFV+HQM+TTFKEF+ DC + FKKYSD EEARANPPN L
Sbjct: 121 DFNDQAMNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNAL 166

[Close]
BLAST of MELO3C033302.2 vs. TrEMBL
Match: tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME (LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103493054 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.6e-31
Identity = 88/155 (56.77%), Postives = 106/155 (68.39%), Query Frame = 0 

Query: 5   LLIECLFFMSTGIMSYTRNNFLKTDTMFLEFKDDLDNLAGGSSSVGDNAGSSSQPPATPT 64
           LL+E  F + + I S+ RNNFL+TD MFL+F  DLDNLAGGSSS+ +N+ SSSQP AT T
Sbjct: 41  LLLE--FSVISTISSFPRNNFLETDVMFLKFAGDLDNLAGGSSSMDENSESSSQPSATLT 100

Query: 65  PRRRAQSRLLVLERHVVVNGRISMTIAPREEKSTFSHAVRFSQWFFVLDFNDQAMNRFVK 124
           P+R  QSRLL LE +  V GR             +   V+    FFVLDF+DQAMN  V+
Sbjct: 101 PKRHTQSRLLELECY--VTGR------------EYIEVVKADLQFFVLDFSDQAMNTSVE 160

Query: 125 HQMLTTFKEFRGDC-QSFKKYSDLEEARANPPNVL 159
           +QM  TFKEF GDC + FKKYSD EEARANPPN+L
Sbjct: 161 YQMSNTFKEFWGDCHKQFKKYSDPEEARANPPNLL 179

[Close]
BLAST of MELO3C033302.2 vs. TrEMBL
Match: tr|A0A1S4E4T7|A0A1S4E4T7_CUCME (uncharacterized protein LOC107991989 OS=Cucumis melo OX=3656 GN=LOC107991989 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 6.3e-14
Identity = 45/60 (75.00%), Postives = 48/60 (80.00%), Query Frame = 0 

Query: 19 SYTRNNFLKTDTMFLEFKDDLDNLAGGSSSVGDNAGSSSQPPATPTPRRRAQSRLLVLER 78
          SY R+NFL+TDTMFLEF+D LDN  GGSSSVGDN GSSSQ P T TPRR  QSRLL L R
Sbjct: 4  SYPRHNFLETDTMFLEFEDQLDNFTGGSSSVGDNVGSSSQQPGTLTPRRHVQSRLLGLLR 63

[Close]
BLAST of MELO3C033302.2 vs. TrEMBL
Match: tr|A0A1S3CQF6|A0A1S3CQF6_CUCME (uncharacterized protein LOC103503078 OS=Cucumis melo OX=3656 GN=LOC103503078 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 9.2e-05
Identity = 31/57 (54.39%), Postives = 35/57 (61.40%), Query Frame = 0 

Query: 51  DNAGSSSQPPATPTPRRRAQSRLLVLERHVVVNGRISMTIAPREEKSTFSHAVRFSQ 108
           ++ GS SQP  T TPRRR QSRLL LER+   N  I M IAP   K    H +RFSQ
Sbjct: 333 NDPGSFSQPSVTSTPRRRVQSRLLELERYFTANRWIPMMIAPGTNKPISLHLIRFSQ 389

The following BLAST results are available for this feature:
BLAST of MELO3C033302.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016901035.12.0e-4361.49PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 P... [more]
ADN34071.13.5e-4061.08CACTA en-spm transposon protein [Cucumis melo subsp. melo][more]
XP_016901155.13.9e-3156.77PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochond... [more]
XP_016902990.19.6e-1475.00PREDICTED: uncharacterized protein LOC107991989 [Cucumis melo][more]
XP_011648549.16.2e-0534.97PREDICTED: (R)-mandelonitrile lyase 1-like [Cucumis sativus][more]
BLAST of MELO3C033302.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C033302.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C033302.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DZ93|A0A1S4DZ93_CUCME1.3e-4361.49uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=... [more]
tr|E5GC72|E5GC72_CUCME2.3e-4061.08CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME2.6e-3156.77LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like O... [more]
tr|A0A1S4E4T7|A0A1S4E4T7_CUCME6.3e-1475.00uncharacterized protein LOC107991989 OS=Cucumis melo OX=3656 GN=LOC107991989 PE=... [more]
tr|A0A1S3CQF6|A0A1S3CQF6_CUCME9.2e-0554.39uncharacterized protein LOC103503078 OS=Cucumis melo OX=3656 GN=LOC103503078 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0008483 transaminase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033302.2.1MELO3C033302.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..68

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C033302.2Wax gourdmedwgoB653
MELO3C033302.2Cucumber (Gy14) v2cgybmedB281
MELO3C033302.2Cucumber (Gy14) v1cgymedB282
MELO3C033302.2Cucurbita maxima (Rimu)cmamedB701
MELO3C033302.2Cucurbita maxima (Rimu)cmamedB908
MELO3C033302.2Cucurbita moschata (Rifu)cmomedB691
MELO3C033302.2Cucurbita moschata (Rifu)cmomedB898
MELO3C033302.2Cucurbita pepo (Zucchini)cpemedB094
MELO3C033302.2Cucurbita pepo (Zucchini)cpemedB534
MELO3C033302.2Wild cucumber (PI 183967)cpimedB315
MELO3C033302.2Cucumber (Chinese Long) v2cumedB313
MELO3C033302.2Bottle gourd (USVL1VR-Ls)lsimedB161
MELO3C033302.2Silver-seed gourdcarmedB0199
MELO3C033302.2Silver-seed gourdcarmedB0299
MELO3C033302.2Cucumber (Chinese Long) v3cucmedB322