MELO3C033269.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C033269.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionProtein FAR1-RELATED SEQUENCE 4
Locationchr08 : 16551371 .. 16553148 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCATTGTTATTATTTGGATCTATAAATAGCATTGGAATGCTTACGTTTAAAGGAAAAAGAAAAAGGTTCTTCTTCTATAAGATAACCCTCTGCTGTCGCCGCCTCAGTTGAAATTAAGATTGGTCTCTTTGGAAGCTTGAGAATTTAAAATGATGAATTTTTCATCAAGGATAAGAGGATTTTCCAACCTCCATTTGAGTAACCTTGGTAAGCCAATGAAATTAAATTGATATTTTATTAATTTAATTTTGGATCTATTTGGGGTTTTTTTAAAGGTTCAATTGGTTAAACTTTTTAAGATCTAAATCTTTGATTTTTCCCAATCAAGGTTGAATTGGTTTCAACCCCTTTTGTTTGAGAAGTTAATTAATTTGAGAAAATTTTTGGATGTTAGCCAATTGCTAATTTTATTAATTAAAATACTGAGTTTTCCTTTTATGATTAGGATCAAGTTATTTGAAGAATTTTTACTGTCAGCTAGGGAGTATCTTGTTTGGCTAAAATCTCTAGGTAAGAGATTCTCCTACTAGCCCTTCGAACTGAATTTAAGAGACCGCATGTAATTATGATTATGCATTAATGGTAGCTAAAATGCATAACTTGATGACTGATGTTATGTTAATGACCGGTAGTATGTTGTTGATGACTGTTGATGATTGTTGATGCATGATATATTAATCACATGATCAAGGACGTTAAGATTAATATTCATGCCTTATTATGATGTTATGCTACATGCTATGGATAGGGTGTTCTGTTAACTTTGTCTATTAGAGTCGTACCCACATGAGTGTCCTTCGGGATCACCTTTTTAGGACTTCGTAGTCCGACGGGACCGCCAGTCTAGCATGGGTATAGATATGATTCGAGTGATTCGACGGGATCCTCGCAGCATGATTGTCTTAGTATTTCCTTCGGGTTCGCTACAGACCAGTATGTCCTAGGTGCTCCCTCGGGACGCCGAAGACCAGATTCTGTTCCTACGAGAGCGCATGTTGCACGTGTTCGAAAACGTGCCAGTTATTGGGTACCTTTTTCAGGACTCTAATGGGAAGTTAATAGACACCTAGCGGGACTAGTAGTGGGTCCCTTGCTGAGTATATGTTTATACTCACTCTTTCCATGTTTAACATTTCAGGTGAAGGTAGGTAGAGGAAAGCTGGCGAGCGACAGAGAAGGATCCGTGACATGCCATATGGGGACTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAATATTCCGTTTTTAATGAAAAATGTAGTTTCCCTCCTTTCAAAAAGGTGTCTCTTGTCATTGTTTCTTTTTAGTAATGACCTCAGCTTAGTATAAAGAGTTGGGTCGTTACAACATAAATTGTAGTTGAATTTCATTATATATCATTGCATACACATATGATGTTATCAGTATATACATCTGTATAGATACAATGACATATATTTAGTGACACATATAGTTTAGTTTTTTTTCCTTCATGTTCTGTATCGTTTTCTTTTTATTTTTTTTATTCGATTAGTATTTTCTTCTATTTCTTACATATATACTATTGCATAATATGTTTATGTTATGTGATTTGTTACAAATATACTACTGCATATATTCAATAATACAGTAACTGAAGTTGTCATCCTCCCATTGAATGTAAAACGTTTAGTTGGTCGACCAAAGAAGATTAGAATTTCTTCTAAAATGGAGTTCAAGAGACGCATTAAATGTGGTCATTGTGGACGTGTTGGCCATAACCGAAAGAGATGCAAGTTTCCCTTATTGAATTAG

mRNA sequence

TCATTGTTATTATTTGGATCTATAAATAGCATTGGAATGCTTACGTTTAAAGGAAAAAGAAAAAGGTTCTTCTTCTATAAGATAACCCTCTGCTGTCGCCGCCTCAGTTGAAATTAAGATTGGTCTCTTTGGAAGCTTGAGAATTTAAAATGATGAATTTTTCATCAAGGATAAGAGGATTTTCCAACCTCCATTTGAGTAACCTTGCTAGGGAGTATCTTGTTTGGCTAAAATCTCTAGTCCGACGGGACCGCCAGTCTAGCATGGGTATAGATATGATTCGAGTGATTCGACGGGATCCTCGCAGCATGATTGTCTTAGTATTTCCTTCGGACCAGTATGTCCTAGGTGCTCCCTCGGGACGCCGAAGACCAGATTCTGTTCCTACGAGAGCGCATGTTGCACGTGTTCGAAAACGTGCCAGTTATTGGAGGAAAGCTGGCGAGCGACAGAGAAGGATCCGTGACATGCCATATGGGGACTCAGTTTTGCTTCCGCTAACTGAAGTTGTCATCCTCCCATTGAATGTAAAACGTTTAGTTGGTCGACCAAAGAAGATTAGAATTTCTTCTAAAATGGAGTTCAAGAGACGCATTAAATGTGGTCATTGTGGACGTGTTGGCCATAACCGAAAGAGATGCAAGTTTCCCTTATTGAATTAG

Coding sequence (CDS)

ATGATGAATTTTTCATCAAGGATAAGAGGATTTTCCAACCTCCATTTGAGTAACCTTGCTAGGGAGTATCTTGTTTGGCTAAAATCTCTAGTCCGACGGGACCGCCAGTCTAGCATGGGTATAGATATGATTCGAGTGATTCGACGGGATCCTCGCAGCATGATTGTCTTAGTATTTCCTTCGGACCAGTATGTCCTAGGTGCTCCCTCGGGACGCCGAAGACCAGATTCTGTTCCTACGAGAGCGCATGTTGCACGTGTTCGAAAACGTGCCAGTTATTGGAGGAAAGCTGGCGAGCGACAGAGAAGGATCCGTGACATGCCATATGGGGACTCAGTTTTGCTTCCGCTAACTGAAGTTGTCATCCTCCCATTGAATGTAAAACGTTTAGTTGGTCGACCAAAGAAGATTAGAATTTCTTCTAAAATGGAGTTCAAGAGACGCATTAAATGTGGTCATTGTGGACGTGTTGGCCATAACCGAAAGAGATGCAAGTTTCCCTTATTGAATTAG

Protein sequence

MMNFSSRIRGFSNLHLSNLAREYLVWLKSLVRRDRQSSMGIDMIRVIRRDPRSMIVLVFPSDQYVLGAPSGRRRPDSVPTRAHVARVRKRASYWRKAGERQRRIRDMPYGDSVLLPLTEVVILPLNVKRLVGRPKKIRISSKMEFKRRIKCGHCGRVGHNRKRCKFPLLN
Homology
[Close]
BLAST of MELO3C033269.2 vs. NCBI nr
Match: XP_022155207.1 (uncharacterized protein LOC111022347 [Momordica charantia])

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-08
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 121 VILPLNVKRLVGRPKKIRISSKMEFKRRIKCGHCGRVGHNRKRCKFPL 169
           ++LP NVKR  GRPKK+RI S +EFK+R+KC  CGR GHNRK CKF L
Sbjct: 528 MLLP-NVKRPAGRPKKLRIPSALEFKKRVKCSRCGRYGHNRKSCKFSL 574

[Close]
BLAST of MELO3C033269.2 vs. NCBI nr
Match: ADN33999.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 65.9 bits (159), Expect = 1.6e-07
Identity = 32/44 (72.73%), Postives = 34/44 (77.27%), Query Frame = 0 

Query: 59  FPSDQYVLGAPSGRRRPDSVPTRAHVARVRKRASYWRKAGERQR 103
           F +DQYVLGAPS  RRPDSVP   HVARVRKRASYW + G R R
Sbjct: 69  FATDQYVLGAPSEHRRPDSVPMGVHVARVRKRASYWVEVGVRAR 112

[Close]
BLAST of MELO3C033269.2 vs. NCBI nr
Match: XP_022157216.1 (uncharacterized protein LOC111023978 [Momordica charantia])

HSP 1 Score: 58.5 bits (140), Expect = 2.5e-05
Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = 0 

Query: 122 ILPLNVKRLVGRPKKIRISSKMEFKRRIKCGHCGRVGHNRKRCKFP 168
           ILP NVKR  GRP+K R+ S++E    ++CG C ++GHNR+RCK P
Sbjct: 198 ILPPNVKRSAGRPRKKRLISRVEATNTVRCGRCHKLGHNRRRCKNP 243

[Close]
BLAST of MELO3C033269.2 vs. NCBI nr
Match: XP_008450195.1 (PREDICTED: uncharacterized protein LOC103491855 [Cucumis melo])

HSP 1 Score: 57.8 bits (138), Expect = 4.2e-05
Identity = 26/47 (55.32%), Postives = 33/47 (70.21%), Query Frame = 0 

Query: 122 ILPLNVKRLVGRPKKIRISSKMEFKRRIKCGHCGRVGHNRKRCKFPL 169
           ILPL VKRL GRPKK R +S +E K  ++C  CG+ GHN + CK P+
Sbjct: 155 ILPLQVKRLAGRPKKKRFTSFLEKKATVRCNRCGKKGHNCRSCKEPI 201

[Close]
BLAST of MELO3C033269.2 vs. NCBI nr
Match: XP_008463110.1 (PREDICTED: uncharacterized protein LOC103501336 [Cucumis melo])

HSP 1 Score: 57.4 bits (137), Expect = 5.5e-05
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 130 LVGRPKKIRISSKMEFKRRIKCGHCGRVGHNRKR 164
           +VGRPKK+RI S+M+FKRRIKCG  GRVGHN KR
Sbjct: 428 IVGRPKKVRIPSRMKFKRRIKCGRYGRVGHNCKR 461

[Close]
BLAST of MELO3C033269.2 vs. TrEMBL
Match: tr|E5GC00|E5GC00_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.0e-07
Identity = 32/44 (72.73%), Postives = 34/44 (77.27%), Query Frame = 0 

Query: 59  FPSDQYVLGAPSGRRRPDSVPTRAHVARVRKRASYWRKAGERQR 103
           F +DQYVLGAPS  RRPDSVP   HVARVRKRASYW + G R R
Sbjct: 69  FATDQYVLGAPSEHRRPDSVPMGVHVARVRKRASYWVEVGVRAR 112

[Close]
BLAST of MELO3C033269.2 vs. TrEMBL
Match: tr|A0A1S3BPC4|A0A1S3BPC4_CUCME (uncharacterized protein LOC103491855 OS=Cucumis melo OX=3656 GN=LOC103491855 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-05
Identity = 26/47 (55.32%), Postives = 33/47 (70.21%), Query Frame = 0 

Query: 122 ILPLNVKRLVGRPKKIRISSKMEFKRRIKCGHCGRVGHNRKRCKFPL 169
           ILPL VKRL GRPKK R +S +E K  ++C  CG+ GHN + CK P+
Sbjct: 155 ILPLQVKRLAGRPKKKRFTSFLEKKATVRCNRCGKKGHNCRSCKEPI 201

[Close]
BLAST of MELO3C033269.2 vs. TrEMBL
Match: tr|A0A1S3CIV7|A0A1S3CIV7_CUCME (uncharacterized protein LOC103501336 OS=Cucumis melo OX=3656 GN=LOC103501336 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.7e-05
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 130 LVGRPKKIRISSKMEFKRRIKCGHCGRVGHNRKR 164
           +VGRPKK+RI S+M+FKRRIKCG  GRVGHN KR
Sbjct: 428 IVGRPKKVRIPSRMKFKRRIKCGRYGRVGHNCKR 461

[Close]
BLAST of MELO3C033269.2 vs. TrEMBL
Match: tr|A5ADM9|A5ADM9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_004945 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.2e-05
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 117 LTEVVILPLNVKRLVGRPKKIRISSKMEFKRRIKCGHCGRVGHNRKRCKFPL 169
           + + V+LP   +R  GRP+K+RISS  E K   +C  CG+ GHNRK CK P+
Sbjct: 632 IRDKVVLPPKTRRPTGRPRKVRISSGGEGKHTSRCSRCGQYGHNRKTCKRPI 683

[Close]
BLAST of MELO3C033269.2 vs. TrEMBL
Match: tr|A5B699|A5B699_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_042737 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 117 LTEVVILPLNVKRLVGRPKKIRISSKMEFKRRIKCGHCGRVGHNRKRCKFPL 169
           + + V+LP   +R  GRP+K+RI S  E KR  +C  CG+ GHNRK CK P+
Sbjct: 508 IRDKVVLPPKTRRPTGRPRKVRILSGGEGKRTSRCSRCGQYGHNRKTCKRPI 559

The following BLAST results are available for this feature:
BLAST of MELO3C033269.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022155207.11.4e-0866.67uncharacterized protein LOC111022347 [Momordica charantia][more]
ADN33999.11.6e-0772.73hypothetical protein [Cucumis melo subsp. melo][more]
XP_022157216.12.5e-0554.35uncharacterized protein LOC111023978 [Momordica charantia][more]
XP_008450195.14.2e-0555.32PREDICTED: uncharacterized protein LOC103491855 [Cucumis melo][more]
XP_008463110.15.5e-0576.47PREDICTED: uncharacterized protein LOC103501336 [Cucumis melo][more]
BLAST of MELO3C033269.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C033269.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C033269.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|E5GC00|E5GC00_CUCME1.0e-0772.73Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S3BPC4|A0A1S3BPC4_CUCME2.8e-0555.32uncharacterized protein LOC103491855 OS=Cucumis melo OX=3656 GN=LOC103491855 PE=... [more]
tr|A0A1S3CIV7|A0A1S3CIV7_CUCME3.7e-0576.47uncharacterized protein LOC103501336 OS=Cucumis melo OX=3656 GN=LOC103501336 PE=... [more]
tr|A5ADM9|A5ADM9_VITVI8.2e-0548.08Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_004945 PE=4 SV=1[more]
tr|A5B699|A5B699_VITVI1.1e-0448.08Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_042737 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016874 ligase activity
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033269.2.1MELO3C033269.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C033269.2Cucumber (Gy14) v2cgybmedB281
MELO3C033269.2Cucumber (Gy14) v1cgymedB013
MELO3C033269.2Cucurbita maxima (Rimu)cmamedB708
MELO3C033269.2Cucurbita maxima (Rimu)cmamedB911
MELO3C033269.2Cucurbita moschata (Rifu)cmomedB699
MELO3C033269.2Cucurbita moschata (Rifu)cmomedB899
MELO3C033269.2Cucurbita pepo (Zucchini)cpemedB085
MELO3C033269.2Wild cucumber (PI 183967)cpimedB315
MELO3C033269.2Cucumber (Chinese Long) v2cumedB313
MELO3C033269.2Bottle gourd (USVL1VR-Ls)lsimedB166
MELO3C033269.2Watermelon (Charleston Gray)medwcgB530
MELO3C033269.2Silver-seed gourdcarmedB0200
MELO3C033269.2Cucumber (Chinese Long) v3cucmedB322
MELO3C033269.2Watermelon (97103) v2medwmbB535
MELO3C033269.2Wax gourdmedwgoB649