MELO3C033217.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C033217.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionLOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like
Locationchr08 : 11794517 .. 11795608 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTATTTTTTATGTCTACAGCCATTATGTCATCGTCATACCCACGTAATAATTTTATGGAGATGGACGCTATGTTCCTCGAGTTTGAGGACAATTTAGATAACATCGCGGGAGAGTCGTTTTCTGTGGGCAACAATGCGGGTGAGTCTAAGAATTTCCTTCATTTTAACTTACGATTATTTCATGTTTTCTTTCTAACATTAATATGTTATTATCGATTTATTGAGTAGGGTCTTCTTCTCAACAACCTGCGACTCCGACTCCTATGAGACGTGCACAGTCTCGACTCTTGGAGTTGGAGCGTCATGTTGCAATAAATGACCGCATTCCGATAACGATCGCCCCTGAAGCGGAGAAGCCTATTTCCCCACACGCCGTTCGCTTCAGCTAGGCGATAGGGTGTGCATGCGAAAGACATTTCCCGTCCGCTGCCTTAAGAAGGCAGACATTGGGAGAGAATACATTGAGATCGTTAAGGGCGACATCCAGGTAATTATGTGCACTACACATTTATGATTTCATTTTAAACATATATAAGTTTAACCAATCTAATGTGTTATGTTTGTAATGTGTAGCGATTTTTTGTGCTTGATTTCATTGATCAAGCAATGAATAGATTTGTTGAACATCAGATGTCCACGACTTTTAAAGAGTTTCGGGTCGACTGTCACAAACACTTCAAAAAGTACAGCCACTTAGATGAGACTCGTGCTAACCCAACAAACGCATTAGTTGGACGTCATGAGGATTGACACTTCTTCTGCAACCACTATATGAGTCGTGCATTCCAGGTATTTCTCATGATTAATTATGATTTTAAGTTTTAATATATATAAGAAATAAATAATATAATTATTTTCATGCAGGACCAATCAAGAACGAACAAGGCTGCTTGCAGGAGCAATCACGGACGAACAAGGTTGCTAGACAGAAGATGCCTTACAATCATAGTAGCGGGTCCAAGTCATTTCTACAACGACAATATGAGCTCGGTGAGAGAAAATGAGAGCTGGTCGATTGTGTGGAGTTGTTCCGAGAAACACACGTTCAAGTTGGGACATTCGTGTCCCAGGCCGTAGAGGATGCGCAT

mRNA sequence

ATGTTTATTTTTTATGTCTACAGCCATTATGTCATCGTCATACCCACGTAATAATTTTATGGAGATGGACGCTATGTTCCTCGAGTTTGAGGACAATTTAGATAACATCGCGGGAGAGTCGTTTTCTGTGGGCAACAATGCGGGGTCTTCTTCTCAACAACCTGCGACTCCGACTCCTATGAGACGTGCACAGTCTCGACTCTTGGAGTTGGAGCGTCATGTTGCAATAAATGACCGCATTCCGATAACGATCGCCCCTGAAGCGGAGAAGCCTATTTCCCCACACGCCGTTCGCTTCAGCTAGGCGATAGGGTGTGCATGCGAAAGACATTTCCCGTCCGCTGCCTTAAGAAGGCAGACATTGGGAGAGAATACATTGAGATCGTTAAGGGCGACATCCAGGTAATTATGTGCACTACACATTTATGATTTCATTTTAAACATATATAAGTTTAACCAATCTAATGTGTTATGTTTGTAATGTGTAGCGATTTTTTGTGCTTGATTTCATTGATCAAGCAATGAATAGATTTGTTGAACATCAGATGTCCACGACTTTTAAAGAGTTTCGGGTCGACTGTCACAAACACTTCAAAAAGTACAGCCACTTAGATGAGACTCGTGCTAACCCAACAAACGCATTAGTTGGACGTCATGAGGATTGACACTTCTTCTGCAACCACTATATGAGTCGTGCATTCCAGGAGCAATCACGGACGAACAAGGTTGCTAGACAGAAGATGCCTTACAATCATAGTAGCGGGTCCAAGTCATTTCTACAACGACAATATGAGCTCGGTGAGAGAAAATGAGAGCTGGTCGATTGTGTGGAGTTGTTCCGAGAAACACACGTTCAAGTTGGGACATTCGTGTCCCAGGCCGTAGAGGATGCGCAT

Coding sequence (CDS)

ATGTCTACAGCCATTATGTCATCGTCATACCCACGTAATAATTTTATGGAGATGGACGCTATGTTCCTCGAGTTTGAGGACAATTTAGATAACATCGCGGGAGAGTCGTTTTCTGTGGGCAACAATGCGGGGTCTTCTTCTCAACAACCTGCGACTCCGACTCCTATGAGACGTGCACAGTCTCGACTCTTGGAGTTGGAGCGTCATGTTGCAATAAATGACCGCATTCCGATAACGATCGCCCCTGAAGCGGAGAAGCCTATTTCCCCACACGCCGTTCGCTTCAGCTAG

Protein sequence

MSTAIMSSSYPRNNFMEMDAMFLEFEDNLDNIAGESFSVGNNAGSSSQQPATPTPMRRAQSRLLELERHVAINDRIPITIAPEAEKPISPHAVRFS
Homology
[Close]
BLAST of MELO3C033217.2 vs. NCBI nr
Match: XP_016901035.1 (PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo])

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-23
Identity = 61/87 (70.11%), Postives = 69/87 (79.31%), Query Frame = 0 

Query: 10 YPRNNFMEMDAMFLEFEDNLDNIAGESFSVGNNAGSSSQQPATPTPMRRAQSRLLELERH 69
          Y RNNF+E D MFLEFED+LDN+AG S SVG+NAGSSSQ PAT TP RR QSRLLELE H
Sbjct: 3  YARNNFLETDVMFLEFEDDLDNLAGGSSSVGDNAGSSSQPPATQTPRRRVQSRLLELECH 62

Query: 70 VAINDRIPITIAPEAEKPISPHAVRFS 97
          V +   IP+ IAP AE PI P+A+RFS
Sbjct: 63 VVVYGCIPMMIAPGAEMPIFPYAIRFS 89

[Close]
BLAST of MELO3C033217.2 vs. NCBI nr
Match: ADN34071.1 (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 115.9 bits (289), Expect = 7.4e-23
Identity = 64/81 (79.01%), Postives = 69/81 (85.19%), Query Frame = 0 

Query: 16 MEMDAMFLEFEDNLDNIAGESFSVGNNAGSSSQQPATPTPMRRAQSRLLELERHVAINDR 75
          ME D MFL+FED+LDNIAG S SVG+N  SSSQQ ATPTP RRAQSRLLELERHVAIN  
Sbjct: 1  METDDMFLQFEDDLDNIAGGSSSVGDNTESSSQQ-ATPTPRRRAQSRLLELERHVAINGC 60

Query: 76 IPITIAPEAEKPISPHAVRFS 97
          IP+TIAP AEKPISP+AV FS
Sbjct: 61 IPMTIAPGAEKPISPYAVHFS 80

[Close]
BLAST of MELO3C033217.2 vs. NCBI nr
Match: XP_016902990.1 (PREDICTED: uncharacterized protein LOC107991989 [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 45/63 (71.43%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 6  MSSSYPRNNFMEMDAMFLEFEDNLDNIAGESFSVGNNAGSSSQQPATPTPMRRAQSRLLE 65
          MSSSYPR+NF+E D MFLEFED LDN  G S SVG+N GSSSQQP T TP R  QSRLL 
Sbjct: 1  MSSSYPRHNFLETDTMFLEFEDQLDNFTGGSSSVGDNVGSSSQQPGTLTPRRHVQSRLLG 60

Query: 66 LER 69
          L R
Sbjct: 61 LLR 63

[Close]
BLAST of MELO3C033217.2 vs. NCBI nr
Match: XP_016901155.1 (PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 2.5e-10
Identity = 41/74 (55.41%), Postives = 51/74 (68.92%), Query Frame = 0 

Query: 8   SSYPRNNFMEMDAMFLEFEDNLDNIAGESFSVGNNAGSSSQQPATPTPMRRAQSRLLELE 67
           SS+PRNNF+E D MFL+F  +LDN+AG S S+  N+ SSSQ  AT TP R  QSRLLELE
Sbjct: 52  SSFPRNNFLETDVMFLKFAGDLDNLAGGSSSMDENSESSSQPSATLTPKRHTQSRLLELE 111

Query: 68  RHVAINDRIPITIA 82
            +V   + I +  A
Sbjct: 112 CYVTGREYIEVVKA 125

[Close]
BLAST of MELO3C033217.2 vs. NCBI nr
Match: XP_008465471.1 (PREDICTED: uncharacterized protein LOC103503078, partial [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 33/56 (58.93%), Postives = 37/56 (66.07%), Query Frame = 0 

Query: 41  NNAGSSSQQPATPTPMRRAQSRLLELERHVAINDRIPITIAPEAEKPISPHAVRFS 97
           N+ GS SQ   T TP RR QSRLLELER+   N  IP+ IAP   KPIS H +RFS
Sbjct: 333 NDPGSFSQPSVTSTPRRRVQSRLLELERYFTANRWIPMMIAPGTNKPISLHLIRFS 388

[Close]
BLAST of MELO3C033217.2 vs. TrEMBL
Match: tr|A0A1S4DZ93|A0A1S4DZ93_CUCME (uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 7.6e-24
Identity = 61/87 (70.11%), Postives = 69/87 (79.31%), Query Frame = 0 

Query: 10 YPRNNFMEMDAMFLEFEDNLDNIAGESFSVGNNAGSSSQQPATPTPMRRAQSRLLELERH 69
          Y RNNF+E D MFLEFED+LDN+AG S SVG+NAGSSSQ PAT TP RR QSRLLELE H
Sbjct: 3  YARNNFLETDVMFLEFEDDLDNLAGGSSSVGDNAGSSSQPPATQTPRRRVQSRLLELECH 62

Query: 70 VAINDRIPITIAPEAEKPISPHAVRFS 97
          V +   IP+ IAP AE PI P+A+RFS
Sbjct: 63 VVVYGCIPMMIAPGAEMPIFPYAIRFS 89

[Close]
BLAST of MELO3C033217.2 vs. TrEMBL
Match: tr|E5GC72|E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.9e-23
Identity = 64/81 (79.01%), Postives = 69/81 (85.19%), Query Frame = 0 

Query: 16 MEMDAMFLEFEDNLDNIAGESFSVGNNAGSSSQQPATPTPMRRAQSRLLELERHVAINDR 75
          ME D MFL+FED+LDNIAG S SVG+N  SSSQQ ATPTP RRAQSRLLELERHVAIN  
Sbjct: 1  METDDMFLQFEDDLDNIAGGSSSVGDNTESSSQQ-ATPTPRRRAQSRLLELERHVAINGC 60

Query: 76 IPITIAPEAEKPISPHAVRFS 97
          IP+TIAP AEKPISP+AV FS
Sbjct: 61 IPMTIAPGAEKPISPYAVHFS 80

[Close]
BLAST of MELO3C033217.2 vs. TrEMBL
Match: tr|A0A1S4E4T7|A0A1S4E4T7_CUCME (uncharacterized protein LOC107991989 OS=Cucumis melo OX=3656 GN=LOC107991989 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.1e-14
Identity = 45/63 (71.43%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 6  MSSSYPRNNFMEMDAMFLEFEDNLDNIAGESFSVGNNAGSSSQQPATPTPMRRAQSRLLE 65
          MSSSYPR+NF+E D MFLEFED LDN  G S SVG+N GSSSQQP T TP R  QSRLL 
Sbjct: 1  MSSSYPRHNFLETDTMFLEFEDQLDNFTGGSSSVGDNVGSSSQQPGTLTPRRHVQSRLLG 60

Query: 66 LER 69
          L R
Sbjct: 61 LLR 63

[Close]
BLAST of MELO3C033217.2 vs. TrEMBL
Match: tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME (LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103493054 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-10
Identity = 41/74 (55.41%), Postives = 51/74 (68.92%), Query Frame = 0 

Query: 8   SSYPRNNFMEMDAMFLEFEDNLDNIAGESFSVGNNAGSSSQQPATPTPMRRAQSRLLELE 67
           SS+PRNNF+E D MFL+F  +LDN+AG S S+  N+ SSSQ  AT TP R  QSRLLELE
Sbjct: 52  SSFPRNNFLETDVMFLKFAGDLDNLAGGSSSMDENSESSSQPSATLTPKRHTQSRLLELE 111

Query: 68  RHVAINDRIPITIA 82
            +V   + I +  A
Sbjct: 112 CYVTGREYIEVVKA 125

[Close]
BLAST of MELO3C033217.2 vs. TrEMBL
Match: tr|A0A1S3CQF6|A0A1S3CQF6_CUCME (uncharacterized protein LOC103503078 OS=Cucumis melo OX=3656 GN=LOC103503078 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.4e-07
Identity = 33/56 (58.93%), Postives = 37/56 (66.07%), Query Frame = 0 

Query: 41  NNAGSSSQQPATPTPMRRAQSRLLELERHVAINDRIPITIAPEAEKPISPHAVRFS 97
           N+ GS SQ   T TP RR QSRLLELER+   N  IP+ IAP   KPIS H +RFS
Sbjct: 333 NDPGSFSQPSVTSTPRRRVQSRLLELERYFTANRWIPMMIAPGTNKPISLHLIRFS 388

The following BLAST results are available for this feature:
BLAST of MELO3C033217.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016901035.11.1e-2370.11PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 P... [more]
ADN34071.17.4e-2379.01CACTA en-spm transposon protein [Cucumis melo subsp. melo][more]
XP_016902990.11.1e-1371.43PREDICTED: uncharacterized protein LOC107991989 [Cucumis melo][more]
XP_016901155.12.5e-1055.41PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochond... [more]
XP_008465471.11.3e-0658.93PREDICTED: uncharacterized protein LOC103503078, partial [Cucumis melo][more]
BLAST of MELO3C033217.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C033217.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C033217.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DZ93|A0A1S4DZ93_CUCME7.6e-2470.11uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=... [more]
tr|E5GC72|E5GC72_CUCME4.9e-2379.01CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S4E4T7|A0A1S4E4T7_CUCME7.1e-1471.43uncharacterized protein LOC107991989 OS=Cucumis melo OX=3656 GN=LOC107991989 PE=... [more]
tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME1.6e-1055.41LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like O... [more]
tr|A0A1S3CQF6|A0A1S3CQF6_CUCME8.4e-0758.93uncharacterized protein LOC103503078 OS=Cucumis melo OX=3656 GN=LOC103503078 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0008483 transaminase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033217.2.1MELO3C033217.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..59

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C033217.2Cucumber (Gy14) v2cgybmedB289
MELO3C033217.2Cucumber (Gy14) v1cgymedB439
MELO3C033217.2Cucurbita maxima (Rimu)cmamedB697
MELO3C033217.2Cucurbita maxima (Rimu)cmamedB903
MELO3C033217.2Cucurbita moschata (Rifu)cmomedB697
MELO3C033217.2Cucurbita moschata (Rifu)cmomedB892
MELO3C033217.2Cucurbita pepo (Zucchini)cpemedB098
MELO3C033217.2Cucurbita pepo (Zucchini)cpemedB546
MELO3C033217.2Wild cucumber (PI 183967)cpimedB329
MELO3C033217.2Cucumber (Chinese Long) v2cumedB325
MELO3C033217.2Bottle gourd (USVL1VR-Ls)lsimedB165
MELO3C033217.2Watermelon (Charleston Gray)medwcgB524
MELO3C033217.2Watermelon (97103) v1medwmB576
MELO3C033217.2Silver-seed gourdcarmedB0121
MELO3C033217.2Silver-seed gourdcarmedB0485
MELO3C033217.2Cucumber (Chinese Long) v3cucmedB335
MELO3C033217.2Watermelon (97103) v2medwmbB528
MELO3C033217.2Wax gourdmedwgoB647