MELO3C033159.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C033159.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionU4/U6 small nuclear ribonucleoprotein Prp3
Locationchr08 : 29946001 .. 29946180 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGGATGGTAGGGCAAGGAGGGACCGGAAGCGGTTTGAGGATCGAGTGAAGGAtcttcATGATGGTGGAAATGTTGATGAGAAGCATGCGAAAGTGATTGAATACAAGTCCGAAGGAGACGTGGGGGATGGAAAAGTTCAGTTTGGAGGCACCACTGATGAAAAAGGGTCACTGGGGAAT

mRNA sequence

TTGGATGGTAGGGCAAGGAGGGACCGGAAGCGGTTTGAGGATCGAGTGAAGGAtcttcATGATGGTGGAAATGTTGATGAGAAGCATGCGAAAGTGATTGAATACAAGTCCGAAGGAGACGTGGGGGATGGAAAAGTTCAGTTTGGAGGCACCACTGATGAAAAAGGGTCACTGGGGAAT

Coding sequence (CDS)

TTGGATGGTAGGGCAAGGAGGGACCGGAAGCGGTTTGAGGATCGAGTGAAGGAtcttcATGATGGTGGAAATGTTGATGAGAAGCATGCGAAAGTGATTGAATACAAGTCCGAAGGAGACGTGGGGGATGGAAAAGTTCAGTTTGGAGGCACCACTGATGAAAAAGGGTCACTGGGGAAT

Protein sequence

LDGRARRDRKRFEDRVKDLHDGGNVDEKHAKVIEYKSEGDVGDGKVQFGGTTDEKGSLGN
Homology
[Close]
BLAST of MELO3C033159.2 vs. NCBI nr
Match: XP_008461606.1 (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 2.4e-19
Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 0 

Query: 1   LDGRARRDRKRFEDRVKDLHDGGNVDEKHAKVIEYKSEGDVGDGKVQFGGTTDEKGSLGN 60
           L GRARRDRKRFEDRVK+  +GGNVDEKHAKVIEYKS+GDVGDGKVQFGGTTDEK SLGN
Sbjct: 211 LSGRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN 270

[Close]
BLAST of MELO3C033159.2 vs. NCBI nr
Match: XP_004143591.1 (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis sativus] >KGN50493.1 hypothetical protein Csa_5G177130 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 8.5e-17
Identity = 49/60 (81.67%), Postives = 52/60 (86.67%), Query Frame = 0 

Query: 1   LDGRARRDRKRFEDRVKDLHDGGNVDEKHAKVIEYKSEGDVGDGKVQFGGTTDEKGSLGN 60
           L GR RRDRKRFEDR K+  +GGNVDEKH KV EYKS+GDVGDGKVQFGGTTDEK SLGN
Sbjct: 211 LSGRGRRDRKRFEDRGKEEDNGGNVDEKHGKVNEYKSKGDVGDGKVQFGGTTDEKRSLGN 270

[Close]
BLAST of MELO3C033159.2 vs. NCBI nr
Match: XP_022139030.1 (protein RDM16 isoform X1 [Momordica charantia])

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-08
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 0 

Query: 3   GRARRDRKRFEDRVKDLHDGGNVDEKHAKVIEYKSEGDVGDGKVQFGGTTDEKGSLGN 61
           GR   +RKRFED V +  +GGNVDEKHA V ++KS+G+VGDGK+Q GGTTD   SLGN
Sbjct: 222 GRGXXERKRFEDWVNEEDNGGNVDEKHANVNKHKSKGNVGDGKIQIGGTTD-VSSLGN 278

[Close]
BLAST of MELO3C033159.2 vs. NCBI nr
Match: XP_022139031.1 (protein RDM16 isoform X2 [Momordica charantia])

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-08
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 3   GRARRDRKRFEDRVKDLHDGGNVDEKHAKVIEYKSEGDVGDGKVQFGGTTD 54
           GR   +RKRFED V +  +GGNVDEKHA V ++KS+G+VGDGK+Q GGTTD
Sbjct: 222 GRGXXERKRFEDWVNEEDNGGNVDEKHANVNKHKSKGNVGDGKIQIGGTTD 272

[Close]
BLAST of MELO3C033159.2 vs. TrEMBL
Match: tr|A0A1S3CF39|A0A1S3CF39_CUCME (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo OX=3656 GN=LOC103500170 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-19
Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 0 

Query: 1   LDGRARRDRKRFEDRVKDLHDGGNVDEKHAKVIEYKSEGDVGDGKVQFGGTTDEKGSLGN 60
           L GRARRDRKRFEDRVK+  +GGNVDEKHAKVIEYKS+GDVGDGKVQFGGTTDEK SLGN
Sbjct: 211 LSGRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN 270

[Close]
BLAST of MELO3C033159.2 vs. TrEMBL
Match: tr|A0A0A0KLQ4|A0A0A0KLQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G177130 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.6e-17
Identity = 49/60 (81.67%), Postives = 52/60 (86.67%), Query Frame = 0 

Query: 1   LDGRARRDRKRFEDRVKDLHDGGNVDEKHAKVIEYKSEGDVGDGKVQFGGTTDEKGSLGN 60
           L GR RRDRKRFEDR K+  +GGNVDEKH KV EYKS+GDVGDGKVQFGGTTDEK SLGN
Sbjct: 211 LSGRGRRDRKRFEDRGKEEDNGGNVDEKHGKVNEYKSKGDVGDGKVQFGGTTDEKRSLGN 270

The following BLAST results are available for this feature:
BLAST of MELO3C033159.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008461606.12.4e-1988.33PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo][more]
XP_004143591.18.5e-1781.67PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis sativus] >KGN5049... [more]
XP_022139030.11.1e-0863.79protein RDM16 isoform X1 [Momordica charantia][more]
XP_022139031.12.5e-0864.71protein RDM16 isoform X2 [Momordica charantia][more]
BLAST of MELO3C033159.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C033159.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C033159.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CF39|A0A1S3CF39_CUCME1.6e-1988.33U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo OX=3656 GN=LOC1035001... [more]
tr|A0A0A0KLQ4|A0A0A0KLQ4_CUCSA5.6e-1781.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G177130 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0019013 viral nucleocapsid
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033159.2.1MELO3C033159.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..60

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C033159.2Cucurbita maxima (Rimu)cmamedB700
MELO3C033159.2Cucurbita pepo (Zucchini)cpemedB097