MELO3C033148.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C033148.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionglial fibrillary acidic protein-like
Locationchr08 : 29075783 .. 29076200 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCGCTATGGAAATCGAGGTTCTACAACATTCAATTAAAGAATACAAATCCCAGCTCATAGAAGCGGAAAGCAAAAATAGATTTTTGCAAAAAGTCGTTAACAGCTCTGAAAGCCAGTTGCTGATATGTTGCAAAGTAAGGAAGGTCGCAACAGATGACTACGCTCAATTAATAGAAAAATATCAAGAAATGTCGATCGATTTTATGATGTGGAGGGACGAGTATGAGACATTGAGATGCAAGTATGATGGTGCTAGAGGTCAGATGGAACGAGGGGCTAAAAAATTAAGACAAATGGTGAGGATGGCAGATCAACTCTCAGTGCAAGCTAGGGCTCTCCAGCAAGGTGTTATACCTACACGCAACACCAACAGAGAATTGTCTCATTTTCTATTAATCATAGGGGAATACCTTGGAC

mRNA sequence

ACCGCTATGGAAATCGAGGTTCTACAACATTCAATTAAAGAATACAAATCCCAGCTCATAGAAGCGGAAAGCAAAAATAGATTTTTGCAAAAAGTCGTTAACAGCTCTGAAAGCCAGTTGCTGATATGTTGCAAAGTAAGGAAGGTCGCAACAGATGACTACGCTCAATTAATAGAAAAATATCAAGAAATGTCGATCGATTTTATGATGTGGAGGGACGAGTATGAGACATTGAGATGCAAGTATGATGGTGCTAGAGGTCAGATGGAACGAGGGGCTAAAAAATTAAGACAAATGGTGAGGATGGCAGATCAACTCTCAGTGCAAGCTAGGGCTCTCCAGCAAGGTGTTATACCTACACGCAACACCAACAGAGAATTGTCTCATTTTCTATTAATCATAGGGGAATACCTTGGAC

Coding sequence (CDS)

ATGGAAATCGAGGTTCTACAACATTCAATTAAAGAATACAAATCCCAGCTCATAGAAGCGGAAAGCAAAAATAGATTTTTGCAAAAAGTCGTTAACAGCTCTGAAAGCCAGTTGCTGATATGTTGCAAAGTAAGGAAGGTCGCAACAGATGACTACGCTCAATTAATAGAAAAATATCAAGAAATGTCGATCGATTTTATGATGTGGAGGGACGAGTATGAGACATTGAGATGCAAGTATGATGGTGCTAGAGGTCAGATGGAACGAGGGGCTAAAAAATTAAGACAAATGGTGAGGATGGCAGATCAACTCTCAGTGCAAGCTAGGGCTCTCCAGCAAGGTGTTATACCTACACGCAACACCAACAGAGAATTGTCTCATTTTCTATTAATCATAGGGGAATACCTTGGA

Protein sequence

MEIEVLQHSIKEYKSQLIEAESKNRFLQKVVNSSESQLLICCKVRKVATDDYAQLIEKYQEMSIDFMMWRDEYETLRCKYDGARGQMERGAKKLRQMVRMADQLSVQARALQQGVIPTRNTNRELSHFLLIIGEYLG
Homology
[Close]
BLAST of MELO3C033148.2 vs. NCBI nr
Match: XP_008464352.1 (PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo])

HSP 1 Score: 171.8 bits (434), Expect = 1.6e-39
Identity = 91/113 (80.53%), Postives = 99/113 (87.61%), Query Frame = 0 

Query: 1   MEIEVLQHSIKEYKSQLIEAESKNRFLQKVVNSSESQLLICCKVRKVATDDYAQLIEKYQ 60
           M IEVLQHSI+EYKSQLIEAESKN FLQK VNSSESQLLIC K R+V TDDYAQL+EKYQ
Sbjct: 120 MGIEVLQHSIEEYKSQLIEAESKNNFLQKAVNSSESQLLICRKAREVITDDYAQLMEKYQ 179

Query: 61  EMSIDFMMWRDEYETLRCKYDGARGQMERGAKKLRQMVRMADQLSVQARALQQ 114
           EMSIDFMMW+DEYETLR KYD A  +MERGA+KLRQM  +ADQ SVQAR L+Q
Sbjct: 180 EMSIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMASVADQFSVQARTLRQ 232

[Close]
BLAST of MELO3C033148.2 vs. TrEMBL
Match: tr|A0A1S3CLQ1|A0A1S3CLQ1_CUCME (glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.1e-39
Identity = 91/113 (80.53%), Postives = 99/113 (87.61%), Query Frame = 0 

Query: 1   MEIEVLQHSIKEYKSQLIEAESKNRFLQKVVNSSESQLLICCKVRKVATDDYAQLIEKYQ 60
           M IEVLQHSI+EYKSQLIEAESKN FLQK VNSSESQLLIC K R+V TDDYAQL+EKYQ
Sbjct: 120 MGIEVLQHSIEEYKSQLIEAESKNNFLQKAVNSSESQLLICRKAREVITDDYAQLMEKYQ 179

Query: 61  EMSIDFMMWRDEYETLRCKYDGARGQMERGAKKLRQMVRMADQLSVQARALQQ 114
           EMSIDFMMW+DEYETLR KYD A  +MERGA+KLRQM  +ADQ SVQAR L+Q
Sbjct: 180 EMSIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMASVADQFSVQARTLRQ 232

The following BLAST results are available for this feature:
BLAST of MELO3C033148.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008464352.11.6e-3980.53PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo][more]
BLAST of MELO3C033148.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C033148.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C033148.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CLQ1|A0A1S3CLQ1_CUCME1.1e-3980.53glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033148.2.1MELO3C033148.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 3..30

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C033148.2Cucumber (Chinese Long) v3cucmedB255
MELO3C033148.2Watermelon (97103) v2medwmbB513
MELO3C033148.2Watermelon (97103) v2medwmbB525
MELO3C033148.2Wax gourdmedwgoB621
MELO3C033148.2Wax gourdmedwgoB659
MELO3C033148.2Cucumber (Gy14) v2cgybmedB224
MELO3C033148.2Cucumber (Gy14) v2cgybmedB284
MELO3C033148.2Cucumber (Gy14) v2cgybmedB445
MELO3C033148.2Cucumber (Gy14) v1cgymedB207
MELO3C033148.2Cucumber (Gy14) v1cgymedB314
MELO3C033148.2Cucurbita maxima (Rimu)cmamedB281
MELO3C033148.2Cucurbita maxima (Rimu)cmamedB324
MELO3C033148.2Cucurbita maxima (Rimu)cmamedB693
MELO3C033148.2Cucurbita maxima (Rimu)cmamedB798
MELO3C033148.2Cucurbita maxima (Rimu)cmamedB876
MELO3C033148.2Cucurbita moschata (Rifu)cmomedB267
MELO3C033148.2Cucurbita moschata (Rifu)cmomedB311
MELO3C033148.2Cucurbita moschata (Rifu)cmomedB685
MELO3C033148.2Cucurbita moschata (Rifu)cmomedB795
MELO3C033148.2Cucurbita moschata (Rifu)cmomedB866
MELO3C033148.2Cucurbita pepo (Zucchini)cpemedB089
MELO3C033148.2Cucurbita pepo (Zucchini)cpemedB505
MELO3C033148.2Cucurbita pepo (Zucchini)cpemedB959
MELO3C033148.2Wild cucumber (PI 183967)cpimedB250
MELO3C033148.2Wild cucumber (PI 183967)cpimedB322
MELO3C033148.2Wild cucumber (PI 183967)cpimedB500
MELO3C033148.2Cucumber (Chinese Long) v2cumedB248
MELO3C033148.2Cucumber (Chinese Long) v2cumedB319
MELO3C033148.2Cucumber (Chinese Long) v2cumedB491
MELO3C033148.2Melon (DHL92) v3.6.1medmedB143
MELO3C033148.2Bottle gourd (USVL1VR-Ls)lsimedB164
MELO3C033148.2Bottle gourd (USVL1VR-Ls)lsimedB289
MELO3C033148.2Bottle gourd (USVL1VR-Ls)lsimedB291
MELO3C033148.2Watermelon (Charleston Gray)medwcgB505
MELO3C033148.2Watermelon (Charleston Gray)medwcgB506
MELO3C033148.2Watermelon (Charleston Gray)medwcgB521
MELO3C033148.2Watermelon (97103) v1medwmB543
MELO3C033148.2Watermelon (97103) v1medwmB564
MELO3C033148.2Silver-seed gourdcarmedB0170
MELO3C033148.2Silver-seed gourdcarmedB0285
MELO3C033148.2Silver-seed gourdcarmedB0568
MELO3C033148.2Silver-seed gourdcarmedB0984