MELO3C033064.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C033064.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionGATA zinc finger domain-containing protein 10-like isoform X2
Locationchr08 : 21221896 .. 21222372 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGATCTACCTATTGTACCTCCACCACTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGCCAAACTGGTTATGGTAGTCCGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGGTCGGTACAGGATATTATGATGCAGGGATCAGTCCATTGTCTTCATACATGGATGTCGGTCCATCTAATTCTTACATGCATGGACATGGACGGGCTTTGGGGAACATAACGAATATATGTATCATGAAGCACCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAAAACAACATAGAGTTCAGAGTCAATGTCGACAACCAGCTCAAAATCGACGAAGTCCAAGTTGTGGAACACATTGATTTTCTTTTATCAATCAAATAA

mRNA sequence

ATGTACGATCTACCTATTGTACCTCCACCACTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGCCAAACTGGTTATGGTAGTCCGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGGTCGGTACAGGATATTATGATGCAGGGATCAGTCCATTGTCTTCATACATGGATGTCGGTCCATCTAATTCTTACATGCATGGACATGGACGGGCTTTGGGGAACATAACGAATATATGTATCATGAAGCACCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAAAACAACATAGAGTTCAGAGTCAATGTCGACAACCAGCTCAAAATCGACGAAGTCCAAGTTGTGGAACACATTGATTTTCTTTTATCAATCAAATAA

Coding sequence (CDS)

ATGTACGATCTACCTATTGTACCTCCACCACTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGCCAAACTGGTTATGGTAGTCCGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGGTCGGTACAGGATATTATGATGCAGGGATCAGTCCATTGTCTTCATACATGGATGTCGGTCCATCTAATTCTTACATGCATGGACATGGACGGGCTTTGGGGAACATAACGAATATATGTATCATGAAGCACCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAAAACAACATAGAGTTCAGAGTCAATGTCGACAACCAGCTCAAAATCGACGAAGTCCAAGTTGTGGAACACATTGATTTTCTTTTATCAATCAAATAA

Protein sequence

MYDLPIVPPPLHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVGTGYYDAGISPLSSYMDVGPSNSYMHGHGRALGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVNVDNQLKIDEVQVVEHIDFLLSIK
Homology
[Close]
BLAST of MELO3C033064.2 vs. NCBI nr
Match: XP_011652738.1 (PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus])

HSP 1 Score: 53.9 bits (128), Expect = 5.7e-04
Identity = 33/67 (49.25%), Postives = 40/67 (59.70%), Query Frame = 0 

Query: 18  VEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVG------TGYYDA 77
           V+  +L+EV  NVEEV P TQTQS+ GY S + MMPTFG  Y D  VG      T YY++
Sbjct: 166 VKSDQLEEVDQNVEEVAPVTQTQSEHGYVSLVMMMPTFGTTYYDYGVGQSSDFRTWYYNS 225

Query: 78  GISPLSS 79
                SS
Sbjct: 226 EAGSSSS 232

[Close]
BLAST of MELO3C033064.2 vs. NCBI nr
Match: KGN45851.1 (hypothetical protein Csa_6G014710 [Cucumis sativus])

HSP 1 Score: 53.1 bits (126), Expect = 9.7e-04
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 6  IVPPPLHRGRVRVEEAELDEVYHNVEEVPPTTQTQS 42
          IVPP + RG VRVEE ELDE+YHN++E+ P  QTQS
Sbjct: 50 IVPPSVRRGHVRVEEVELDEIYHNLKELHPMIQTQS 85

[Close]
BLAST of MELO3C033064.2 vs. TrEMBL
Match: tr|A0A0A0KDI9|A0A0A0KDI9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014710 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.4e-04
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 6  IVPPPLHRGRVRVEEAELDEVYHNVEEVPPTTQTQS 42
          IVPP + RG VRVEE ELDE+YHN++E+ P  QTQS
Sbjct: 50 IVPPSVRRGHVRVEEVELDEIYHNLKELHPMIQTQS 85

The following BLAST results are available for this feature:
BLAST of MELO3C033064.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011652738.15.7e-0449.25PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus][more]
KGN45851.19.7e-0466.67hypothetical protein Csa_6G014710 [Cucumis sativus][more]
BLAST of MELO3C033064.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C033064.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C033064.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KDI9|A0A0A0KDI9_CUCSA6.4e-0466.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014710 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033064.2.1MELO3C033064.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C033064.2Watermelon (97103) v2medwmbB526
MELO3C033064.2Wax gourdmedwgoB667
MELO3C033064.2Cucumber (Gy14) v2cgybmedB285
MELO3C033064.2Cucumber (Gy14) v1cgymedB577
MELO3C033064.2Cucurbita maxima (Rimu)cmamedB698
MELO3C033064.2Cucurbita maxima (Rimu)cmamedB909
MELO3C033064.2Cucurbita moschata (Rifu)cmomedB689
MELO3C033064.2Cucurbita moschata (Rifu)cmomedB897
MELO3C033064.2Cucurbita pepo (Zucchini)cpemedB095
MELO3C033064.2Cucurbita pepo (Zucchini)cpemedB533
MELO3C033064.2Wild cucumber (PI 183967)cpimedB324
MELO3C033064.2Cucumber (Chinese Long) v2cumedB321
MELO3C033064.2Bottle gourd (USVL1VR-Ls)lsimedB159
MELO3C033064.2Watermelon (Charleston Gray)medwcgB522
MELO3C033064.2Watermelon (97103) v1medwmB574
MELO3C033064.2Silver-seed gourdcarmedB0298
MELO3C033064.2Silver-seed gourdcarmedB0858
MELO3C033064.2Cucumber (Chinese Long) v3cucmedB329